Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03680 and AMB_RS03685 are separated by 124 nucleotides AMB_RS03685 and AMB_RS03690 overlap by 17 nucleotides AMB_RS03690 and AMB_RS03695 are separated by 90 nucleotides
AMB_RS03680: AMB_RS03680 - UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase, at 776,448 to 777,644
_RS03680
AMB_RS03685: AMB_RS03685 - spore coat polysaccharide biosynthesis protein F, at 777,769 to 778,533
_RS03685
AMB_RS03690: AMB_RS03690 - hypothetical protein, at 778,517 to 779,284
_RS03690
AMB_RS03695: AMB_RS03695 - NADP-dependent malic enzyme, at 779,375 to 781,657
_RS03695
Position (kb) 778
779
780 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 777.546 kb on + strand at 777.546 kb on + strand at 777.546 kb on + strand at 777.546 kb on + strand at 777.546 kb on + strand at 777.546 kb on + strand at 777.546 kb on + strand at 777.546 kb on + strand at 777.546 kb on + strand at 777.547 kb on - strand at 777.547 kb on - strand at 777.547 kb on - strand at 777.547 kb on - strand at 777.547 kb on - strand at 777.549 kb on + strand at 777.549 kb on + strand at 777.550 kb on - strand at 777.653 kb on - strand at 778.012 kb on + strand, within AMB_RS03685 at 778.012 kb on + strand, within AMB_RS03685 at 778.012 kb on + strand, within AMB_RS03685 at 778.012 kb on + strand, within AMB_RS03685 at 778.013 kb on - strand, within AMB_RS03685 at 778.135 kb on + strand, within AMB_RS03685 at 778.136 kb on - strand, within AMB_RS03685 at 778.136 kb on - strand, within AMB_RS03685 at 778.136 kb on - strand, within AMB_RS03685 at 778.136 kb on - strand, within AMB_RS03685 at 778.144 kb on - strand, within AMB_RS03685 at 778.144 kb on - strand, within AMB_RS03685 at 778.144 kb on - strand, within AMB_RS03685 at 778.144 kb on - strand, within AMB_RS03685 at 778.297 kb on - strand, within AMB_RS03685 at 778.297 kb on - strand, within AMB_RS03685 at 778.360 kb on + strand, within AMB_RS03685 at 778.360 kb on + strand, within AMB_RS03685 at 778.360 kb on + strand, within AMB_RS03685 at 778.360 kb on + strand, within AMB_RS03685 at 778.361 kb on - strand, within AMB_RS03685 at 778.361 kb on - strand, within AMB_RS03685 at 778.361 kb on - strand, within AMB_RS03685 at 778.551 kb on + strand at 778.551 kb on + strand at 778.677 kb on + strand, within AMB_RS03690 at 778.677 kb on + strand, within AMB_RS03690 at 778.677 kb on + strand, within AMB_RS03690 at 778.677 kb on + strand, within AMB_RS03690 at 778.677 kb on + strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.678 kb on - strand, within AMB_RS03690 at 778.681 kb on + strand, within AMB_RS03690 at 778.682 kb on - strand, within AMB_RS03690 at 778.682 kb on - strand, within AMB_RS03690 at 778.903 kb on - strand, within AMB_RS03690 at 779.064 kb on + strand, within AMB_RS03690 at 779.064 kb on + strand, within AMB_RS03690 at 779.064 kb on + strand, within AMB_RS03690 at 779.065 kb on - strand, within AMB_RS03690 at 779.065 kb on - strand, within AMB_RS03690 at 779.065 kb on - strand, within AMB_RS03690 at 779.065 kb on - strand, within AMB_RS03690 at 779.105 kb on - strand, within AMB_RS03690 at 779.377 kb on - strand at 779.680 kb on - strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.865 kb on + strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.866 kb on - strand, within AMB_RS03695 at 779.982 kb on + strand, within AMB_RS03695 at 780.081 kb on + strand, within AMB_RS03695 at 780.081 kb on + strand, within AMB_RS03695 at 780.082 kb on - strand, within AMB_RS03695 at 780.121 kb on - strand, within AMB_RS03695
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 777,546 + +0.2 777,546 + +0.2 777,546 + +0.2 777,546 + -0.1 777,546 + +1.0 777,546 + -0.3 777,546 + +0.1 777,546 + -2.1 777,546 + -0.1 777,547 - -0.8 777,547 - +0.1 777,547 - +0.5 777,547 - -1.3 777,547 - -0.7 777,549 + -1.3 777,549 + +0.5 777,550 - -0.5 777,653 - -2.2 778,012 + AMB_RS03685 0.32 -1.3 778,012 + AMB_RS03685 0.32 +0.2 778,012 + AMB_RS03685 0.32 -0.1 778,012 + AMB_RS03685 0.32 +0.5 778,013 - AMB_RS03685 0.32 -0.0 778,135 + AMB_RS03685 0.48 -1.1 778,136 - AMB_RS03685 0.48 -1.3 778,136 - AMB_RS03685 0.48 -0.0 778,136 - AMB_RS03685 0.48 -0.1 778,136 - AMB_RS03685 0.48 -1.2 778,144 - AMB_RS03685 0.49 +0.5 778,144 - AMB_RS03685 0.49 -0.1 778,144 - AMB_RS03685 0.49 -0.1 778,144 - AMB_RS03685 0.49 -0.3 778,297 - AMB_RS03685 0.69 +0.7 778,297 - AMB_RS03685 0.69 -0.3 778,360 + AMB_RS03685 0.77 +0.1 778,360 + AMB_RS03685 0.77 -0.2 778,360 + AMB_RS03685 0.77 -2.6 778,360 + AMB_RS03685 0.77 +0.2 778,361 - AMB_RS03685 0.77 +0.5 778,361 - AMB_RS03685 0.77 -0.1 778,361 - AMB_RS03685 0.77 -0.8 778,551 + -0.8 778,551 + -2.1 778,677 + AMB_RS03690 0.21 +0.0 778,677 + AMB_RS03690 0.21 -2.0 778,677 + AMB_RS03690 0.21 -2.4 778,677 + AMB_RS03690 0.21 +0.2 778,677 + AMB_RS03690 0.21 -2.0 778,678 - AMB_RS03690 0.21 +0.4 778,678 - AMB_RS03690 0.21 -0.7 778,678 - AMB_RS03690 0.21 +0.3 778,678 - AMB_RS03690 0.21 +0.2 778,678 - AMB_RS03690 0.21 -1.1 778,681 + AMB_RS03690 0.21 -1.3 778,682 - AMB_RS03690 0.21 -1.5 778,682 - AMB_RS03690 0.21 -0.8 778,903 - AMB_RS03690 0.50 -0.8 779,064 + AMB_RS03690 0.71 +0.5 779,064 + AMB_RS03690 0.71 -0.8 779,064 + AMB_RS03690 0.71 -0.0 779,065 - AMB_RS03690 0.71 +0.4 779,065 - AMB_RS03690 0.71 -0.5 779,065 - AMB_RS03690 0.71 -0.5 779,065 - AMB_RS03690 0.71 -0.8 779,105 - AMB_RS03690 0.77 -0.1 779,377 - -0.8 779,680 - AMB_RS03695 0.13 +0.3 779,865 + AMB_RS03695 0.21 -1.1 779,865 + AMB_RS03695 0.21 +0.3 779,865 + AMB_RS03695 0.21 -1.7 779,865 + AMB_RS03695 0.21 +0.2 779,865 + AMB_RS03695 0.21 -0.1 779,865 + AMB_RS03695 0.21 -2.1 779,865 + AMB_RS03695 0.21 +0.5 779,866 - AMB_RS03695 0.22 -0.1 779,866 - AMB_RS03695 0.22 -2.2 779,866 - AMB_RS03695 0.22 -2.0 779,866 - AMB_RS03695 0.22 -2.1 779,866 - AMB_RS03695 0.22 -0.1 779,866 - AMB_RS03695 0.22 -1.3 779,866 - AMB_RS03695 0.22 -2.3 779,866 - AMB_RS03695 0.22 -0.0 779,982 + AMB_RS03695 0.27 -0.5 780,081 + AMB_RS03695 0.31 -0.3 780,081 + AMB_RS03695 0.31 -2.1 780,082 - AMB_RS03695 0.31 -4.1 780,121 - AMB_RS03695 0.33 +0.2
Or see this region's nucleotide sequence