Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS03590 and AMB_RS03595 are separated by 163 nucleotides AMB_RS03595 and AMB_RS03600 are separated by 329 nucleotides AMB_RS03600 and AMB_RS03605 are separated by 58 nucleotides
AMB_RS03590: AMB_RS03590 - DNA primase, at 753,390 to 755,261
_RS03590
AMB_RS03595: AMB_RS03595 - aspartyl-tRNA amidotransferase subunit B, at 755,425 to 755,883
_RS03595
AMB_RS03600: AMB_RS03600 - carbamoyl-phosphate synthase small subunit, at 756,213 to 757,418
_RS03600
AMB_RS03605: AMB_RS03605 - carbamoyl-phosphate synthase large subunit, at 757,477 to 760,734
_RS03605
Position (kb) 756
757
758 Strain fitness (log2 ratio) -2
-1
0
1 at 755.270 kb on - strand at 755.270 kb on - strand at 755.360 kb on - strand at 755.360 kb on - strand at 755.402 kb on - strand at 755.402 kb on - strand at 755.402 kb on - strand at 755.402 kb on - strand at 755.404 kb on - strand at 755.404 kb on - strand at 755.404 kb on - strand at 755.662 kb on - strand, within AMB_RS03595 at 755.672 kb on + strand, within AMB_RS03595 at 755.673 kb on - strand, within AMB_RS03595 at 755.673 kb on - strand, within AMB_RS03595 at 755.673 kb on - strand, within AMB_RS03595 at 755.673 kb on - strand, within AMB_RS03595 at 755.886 kb on + strand at 756.021 kb on + strand at 756.021 kb on + strand at 756.021 kb on + strand at 756.021 kb on + strand at 756.021 kb on + strand at 756.021 kb on + strand at 756.023 kb on + strand at 756.023 kb on + strand at 756.023 kb on + strand at 756.037 kb on + strand at 756.154 kb on + strand at 756.159 kb on + strand at 756.159 kb on + strand at 756.159 kb on + strand at 756.159 kb on + strand at 756.159 kb on + strand at 756.159 kb on + strand at 756.159 kb on + strand at 756.164 kb on + strand at 756.164 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 755,270 - -1.3 755,270 - +0.3 755,360 - +0.0 755,360 - -0.4 755,402 - +0.3 755,402 - -0.3 755,402 - -2.7 755,402 - -1.1 755,404 - +1.0 755,404 - -0.1 755,404 - -2.0 755,662 - AMB_RS03595 0.52 +0.2 755,672 + AMB_RS03595 0.54 -1.4 755,673 - AMB_RS03595 0.54 -2.0 755,673 - AMB_RS03595 0.54 +0.1 755,673 - AMB_RS03595 0.54 -0.2 755,673 - AMB_RS03595 0.54 +0.2 755,886 + -1.3 756,021 + -0.1 756,021 + -0.3 756,021 + +0.2 756,021 + -0.3 756,021 + -1.7 756,021 + -0.3 756,023 + -0.8 756,023 + -1.8 756,023 + +1.5 756,037 + -0.5 756,154 + +0.4 756,159 + +0.3 756,159 + +0.2 756,159 + -1.5 756,159 + +0.2 756,159 + +0.0 756,159 + +0.5 756,159 + -1.4 756,164 + +0.2 756,164 + +0.9
Or see this region's nucleotide sequence