Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03465

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03460 and AMB_RS03465 are separated by 142 nucleotidesAMB_RS03465 and AMB_RS03470 are separated by 6 nucleotidesAMB_RS03470 and AMB_RS03475 are separated by 5 nucleotides AMB_RS03460: AMB_RS03460 - hydroxymethylglutaryl-CoA lyase, at 722,387 to 723,280 _RS03460 AMB_RS03465: AMB_RS03465 - acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha, at 723,423 to 725,420 _RS03465 AMB_RS03470: AMB_RS03470 - enoyl-CoA hydratase, at 725,427 to 726,209 _RS03470 AMB_RS03475: AMB_RS03475 - methylcrotonoyl-CoA carboxylase, at 726,215 to 727,822 _RS03475 Position (kb) 723 724 725 726Strain fitness (log2 ratio) -3 -2 -1 0 1at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.511 kb on + strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.512 kb on - strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.556 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.646 kb on + strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.647 kb on - strand, within AMB_RS03460at 722.747 kb on - strand, within AMB_RS03460at 722.747 kb on - strand, within AMB_RS03460at 722.766 kb on + strand, within AMB_RS03460at 722.766 kb on + strand, within AMB_RS03460at 722.767 kb on - strand, within AMB_RS03460at 722.767 kb on - strand, within AMB_RS03460at 722.832 kb on + strand, within AMB_RS03460at 722.832 kb on + strand, within AMB_RS03460at 722.833 kb on - strand, within AMB_RS03460at 722.833 kb on - strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.859 kb on + strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 722.860 kb on - strand, within AMB_RS03460at 723.041 kb on - strand, within AMB_RS03460at 723.041 kb on - strand, within AMB_RS03460at 723.041 kb on - strand, within AMB_RS03460at 723.051 kb on + strand, within AMB_RS03460at 723.051 kb on + strand, within AMB_RS03460at 723.052 kb on - strand, within AMB_RS03460at 723.424 kb on + strandat 723.425 kb on - strandat 723.425 kb on - strandat 723.425 kb on - strandat 723.741 kb on + strand, within AMB_RS03465at 723.742 kb on - strand, within AMB_RS03465at 724.026 kb on + strand, within AMB_RS03465at 724.192 kb on + strand, within AMB_RS03465at 724.276 kb on + strand, within AMB_RS03465at 724.276 kb on + strand, within AMB_RS03465at 724.276 kb on + strand, within AMB_RS03465at 724.276 kb on + strand, within AMB_RS03465at 724.276 kb on + strand, within AMB_RS03465at 724.277 kb on - strand, within AMB_RS03465at 724.277 kb on - strand, within AMB_RS03465at 724.277 kb on - strand, within AMB_RS03465at 724.405 kb on + strand, within AMB_RS03465at 724.405 kb on + strand, within AMB_RS03465at 724.405 kb on + strand, within AMB_RS03465at 724.406 kb on - strand, within AMB_RS03465at 724.588 kb on + strand, within AMB_RS03465at 724.618 kb on + strand, within AMB_RS03465at 724.618 kb on + strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.619 kb on - strand, within AMB_RS03465at 724.753 kb on + strand, within AMB_RS03465at 724.816 kb on + strand, within AMB_RS03465at 724.817 kb on - strand, within AMB_RS03465at 724.817 kb on - strand, within AMB_RS03465at 725.020 kb on + strand, within AMB_RS03465at 725.242 kb on + strandat 725.242 kb on + strandat 725.242 kb on + strandat 725.242 kb on + strandat 725.243 kb on - strandat 725.243 kb on - strandat 725.243 kb on - strandat 725.243 kb on - strandat 725.326 kb on + strandat 725.326 kb on + strandat 725.327 kb on - strandat 725.429 kb on - strandat 725.429 kb on - strandat 725.731 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.770 kb on + strand, within AMB_RS03470at 725.771 kb on - strand, within AMB_RS03470at 725.771 kb on - strand, within AMB_RS03470at 725.771 kb on - strand, within AMB_RS03470at 725.990 kb on - strand, within AMB_RS03470at 726.216 kb on + strandat 726.216 kb on + strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.217 kb on - strandat 726.346 kb on - strandat 726.348 kb on + strandat 726.348 kb on + strandat 726.348 kb on + strandat 726.348 kb on + strandat 726.349 kb on - strandat 726.349 kb on - strandat 726.349 kb on - strandat 726.349 kb on - strandat 726.349 kb on - strandat 726.370 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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722,511 + AMB_RS03460 0.14 -0.8
722,511 + AMB_RS03460 0.14 -0.3
722,511 + AMB_RS03460 0.14 -0.1
722,511 + AMB_RS03460 0.14 -1.7
722,511 + AMB_RS03460 0.14 -3.6
722,511 + AMB_RS03460 0.14 -1.1
722,511 + AMB_RS03460 0.14 -2.0
722,511 + AMB_RS03460 0.14 -0.5
722,512 - AMB_RS03460 0.14 +0.2
722,512 - AMB_RS03460 0.14 +0.1
722,512 - AMB_RS03460 0.14 -1.1
722,512 - AMB_RS03460 0.14 +0.5
722,512 - AMB_RS03460 0.14 -0.8
722,512 - AMB_RS03460 0.14 -0.1
722,512 - AMB_RS03460 0.14 -0.1
722,512 - AMB_RS03460 0.14 +0.1
722,512 - AMB_RS03460 0.14 -1.1
722,512 - AMB_RS03460 0.14 -0.0
722,556 + AMB_RS03460 0.19 -0.8
722,556 + AMB_RS03460 0.19 +0.2
722,556 + AMB_RS03460 0.19 +0.1
722,556 + AMB_RS03460 0.19 -0.7
722,646 + AMB_RS03460 0.29 +0.0
722,646 + AMB_RS03460 0.29 +0.0
722,646 + AMB_RS03460 0.29 -0.8
722,646 + AMB_RS03460 0.29 -0.6
722,646 + AMB_RS03460 0.29 +0.2
722,646 + AMB_RS03460 0.29 +0.1
722,646 + AMB_RS03460 0.29 +0.5
722,646 + AMB_RS03460 0.29 -1.8
722,647 - AMB_RS03460 0.29 -0.7
722,647 - AMB_RS03460 0.29 -0.1
722,647 - AMB_RS03460 0.29 +0.1
722,647 - AMB_RS03460 0.29 -3.3
722,647 - AMB_RS03460 0.29 -1.1
722,647 - AMB_RS03460 0.29 -1.0
722,647 - AMB_RS03460 0.29 -0.5
722,647 - AMB_RS03460 0.29 -0.5
722,647 - AMB_RS03460 0.29 -0.1
722,647 - AMB_RS03460 0.29 +0.6
722,647 - AMB_RS03460 0.29 +0.5
722,647 - AMB_RS03460 0.29 -1.3
722,647 - AMB_RS03460 0.29 +0.0
722,647 - AMB_RS03460 0.29 +0.5
722,647 - AMB_RS03460 0.29 +0.6
722,647 - AMB_RS03460 0.29 -1.1
722,647 - AMB_RS03460 0.29 -0.0
722,747 - AMB_RS03460 0.40 +0.0
722,747 - AMB_RS03460 0.40 -0.1
722,766 + AMB_RS03460 0.42 -0.7
722,766 + AMB_RS03460 0.42 +0.1
722,767 - AMB_RS03460 0.43 -0.3
722,767 - AMB_RS03460 0.43 -1.1
722,832 + AMB_RS03460 0.50 -0.1
722,832 + AMB_RS03460 0.50 +0.2
722,833 - AMB_RS03460 0.50 -1.8
722,833 - AMB_RS03460 0.50 -0.1
722,859 + AMB_RS03460 0.53 +0.4
722,859 + AMB_RS03460 0.53 +0.5
722,859 + AMB_RS03460 0.53 +0.6
722,859 + AMB_RS03460 0.53 +0.3
722,859 + AMB_RS03460 0.53 -1.5
722,859 + AMB_RS03460 0.53 -0.5
722,860 - AMB_RS03460 0.53 -1.1
722,860 - AMB_RS03460 0.53 -0.5
722,860 - AMB_RS03460 0.53 -1.7
722,860 - AMB_RS03460 0.53 -2.2
722,860 - AMB_RS03460 0.53 -2.1
723,041 - AMB_RS03460 0.73 +0.8
723,041 - AMB_RS03460 0.73 -0.5
723,041 - AMB_RS03460 0.73 -0.0
723,051 + AMB_RS03460 0.74 +0.8
723,051 + AMB_RS03460 0.74 +0.5
723,052 - AMB_RS03460 0.74 +0.4
723,424 + -0.3
723,425 - -0.8
723,425 - -0.1
723,425 - -1.3
723,741 + AMB_RS03465 0.16 -0.7
723,742 - AMB_RS03465 0.16 -2.0
724,026 + AMB_RS03465 0.30 -0.5
724,192 + AMB_RS03465 0.38 +0.1
724,276 + AMB_RS03465 0.43 +0.8
724,276 + AMB_RS03465 0.43 +0.2
724,276 + AMB_RS03465 0.43 -2.9
724,276 + AMB_RS03465 0.43 -1.1
724,276 + AMB_RS03465 0.43 -2.3
724,277 - AMB_RS03465 0.43 -0.1
724,277 - AMB_RS03465 0.43 -2.1
724,277 - AMB_RS03465 0.43 -0.5
724,405 + AMB_RS03465 0.49 +0.0
724,405 + AMB_RS03465 0.49 -2.6
724,405 + AMB_RS03465 0.49 -0.1
724,406 - AMB_RS03465 0.49 -0.4
724,588 + AMB_RS03465 0.58 -2.1
724,618 + AMB_RS03465 0.60 -0.8
724,618 + AMB_RS03465 0.60 -0.0
724,619 - AMB_RS03465 0.60 -2.4
724,619 - AMB_RS03465 0.60 +0.0
724,619 - AMB_RS03465 0.60 -2.1
724,619 - AMB_RS03465 0.60 -2.5
724,619 - AMB_RS03465 0.60 +1.2
724,619 - AMB_RS03465 0.60 +1.1
724,619 - AMB_RS03465 0.60 +0.4
724,753 + AMB_RS03465 0.67 -1.3
724,816 + AMB_RS03465 0.70 +0.2
724,817 - AMB_RS03465 0.70 +0.1
724,817 - AMB_RS03465 0.70 -0.1
725,020 + AMB_RS03465 0.80 -1.4
725,242 + -0.4
725,242 + -0.1
725,242 + -1.5
725,242 + +0.2
725,243 - -1.3
725,243 - -0.0
725,243 - -1.1
725,243 - +0.1
725,326 + +1.5
725,326 + -2.3
725,327 - +0.3
725,429 - +0.1
725,429 - -0.5
725,731 + AMB_RS03470 0.39 +0.6
725,770 + AMB_RS03470 0.44 -0.2
725,770 + AMB_RS03470 0.44 +0.3
725,770 + AMB_RS03470 0.44 -2.6
725,770 + AMB_RS03470 0.44 +0.1
725,770 + AMB_RS03470 0.44 +1.5
725,770 + AMB_RS03470 0.44 +0.5
725,770 + AMB_RS03470 0.44 -1.8
725,771 - AMB_RS03470 0.44 +0.6
725,771 - AMB_RS03470 0.44 -0.0
725,771 - AMB_RS03470 0.44 -0.1
725,990 - AMB_RS03470 0.72 -2.0
726,216 + -2.2
726,216 + -1.3
726,217 - +0.6
726,217 - -0.8
726,217 - +0.3
726,217 - +0.6
726,217 - -1.7
726,217 - +0.4
726,346 - +0.2
726,348 + -1.1
726,348 + +1.0
726,348 + -0.5
726,348 + -1.8
726,349 - -0.1
726,349 - +0.1
726,349 - -0.1
726,349 - -2.2
726,349 - +0.6
726,370 - +0.0

Or see this region's nucleotide sequence