Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS03380

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS03370 and AMB_RS03375 are separated by 121 nucleotidesAMB_RS03375 and AMB_RS03380 overlap by 1 nucleotidesAMB_RS03380 and AMB_RS03385 are separated by 599 nucleotides AMB_RS03370: AMB_RS03370 - hypothetical protein, at 706,354 to 707,037 _RS03370 AMB_RS03375: AMB_RS03375 - helix-turn-helix domain-containing protein, at 707,159 to 707,371 _RS03375 AMB_RS03380: AMB_RS03380 - hypothetical protein, at 707,371 to 708,591 _RS03380 AMB_RS03385: AMB_RS03385 - hypothetical protein, at 709,191 to 710,666 _RS03385 Position (kb) 707 708 709Strain fitness (log2 ratio) -3 -2 -1 0 1at 706.421 kb on - strandat 706.421 kb on - strandat 706.421 kb on - strandat 706.421 kb on - strandat 706.424 kb on + strand, within AMB_RS03370at 706.424 kb on + strand, within AMB_RS03370at 706.424 kb on + strand, within AMB_RS03370at 706.424 kb on + strand, within AMB_RS03370at 706.424 kb on + strand, within AMB_RS03370at 706.502 kb on + strand, within AMB_RS03370at 706.503 kb on - strand, within AMB_RS03370at 706.512 kb on + strand, within AMB_RS03370at 706.512 kb on + strand, within AMB_RS03370at 706.512 kb on + strand, within AMB_RS03370at 706.513 kb on - strand, within AMB_RS03370at 706.513 kb on - strand, within AMB_RS03370at 706.513 kb on - strand, within AMB_RS03370at 706.513 kb on - strand, within AMB_RS03370at 706.555 kb on - strand, within AMB_RS03370at 706.613 kb on + strand, within AMB_RS03370at 706.632 kb on + strand, within AMB_RS03370at 706.633 kb on - strand, within AMB_RS03370at 706.651 kb on + strand, within AMB_RS03370at 706.652 kb on - strand, within AMB_RS03370at 706.826 kb on + strand, within AMB_RS03370at 706.868 kb on + strand, within AMB_RS03370at 706.868 kb on + strand, within AMB_RS03370at 706.907 kb on + strand, within AMB_RS03370at 706.930 kb on - strand, within AMB_RS03370at 707.009 kb on + strandat 707.009 kb on + strandat 707.010 kb on - strandat 707.010 kb on - strandat 707.010 kb on - strandat 707.010 kb on - strandat 707.022 kb on - strandat 707.022 kb on - strandat 707.086 kb on + strandat 707.120 kb on + strandat 707.158 kb on - strandat 707.175 kb on + strandat 707.175 kb on + strandat 707.178 kb on + strandat 707.179 kb on - strandat 707.206 kb on + strand, within AMB_RS03375at 707.468 kb on - strandat 707.468 kb on - strandat 707.482 kb on + strandat 707.482 kb on + strandat 707.482 kb on + strandat 707.482 kb on + strandat 707.482 kb on + strandat 707.483 kb on - strandat 707.483 kb on - strandat 707.483 kb on - strandat 707.518 kb on + strand, within AMB_RS03380at 707.518 kb on + strand, within AMB_RS03380at 707.518 kb on + strand, within AMB_RS03380at 707.518 kb on + strand, within AMB_RS03380at 707.519 kb on - strand, within AMB_RS03380at 707.519 kb on - strand, within AMB_RS03380at 707.519 kb on - strand, within AMB_RS03380at 707.712 kb on + strand, within AMB_RS03380at 707.713 kb on - strand, within AMB_RS03380at 707.713 kb on - strand, within AMB_RS03380at 707.740 kb on + strand, within AMB_RS03380at 707.786 kb on - strand, within AMB_RS03380at 707.786 kb on - strand, within AMB_RS03380at 707.853 kb on + strand, within AMB_RS03380at 707.877 kb on + strand, within AMB_RS03380at 707.877 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.974 kb on + strand, within AMB_RS03380at 707.975 kb on - strand, within AMB_RS03380at 707.975 kb on - strand, within AMB_RS03380at 707.975 kb on - strand, within AMB_RS03380at 707.975 kb on - strand, within AMB_RS03380at 707.976 kb on + strand, within AMB_RS03380at 707.976 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.205 kb on + strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.206 kb on - strand, within AMB_RS03380at 708.208 kb on + strand, within AMB_RS03380at 708.208 kb on + strand, within AMB_RS03380at 708.208 kb on + strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.209 kb on - strand, within AMB_RS03380at 708.316 kb on + strand, within AMB_RS03380at 708.317 kb on - strand, within AMB_RS03380at 708.317 kb on - strand, within AMB_RS03380at 708.344 kb on + strand, within AMB_RS03380at 708.344 kb on + strand, within AMB_RS03380at 708.344 kb on + strand, within AMB_RS03380at 708.344 kb on + strand, within AMB_RS03380at 708.345 kb on - strand, within AMB_RS03380at 708.420 kb on + strand, within AMB_RS03380at 708.421 kb on - strand, within AMB_RS03380at 708.471 kb on - strandat 708.482 kb on + strandat 708.561 kb on + strandat 708.581 kb on + strandat 708.581 kb on + strandat 708.581 kb on + strandat 708.590 kb on - strandat 708.628 kb on + strandat 708.628 kb on + strandat 708.628 kb on + strandat 708.628 kb on + strandat 708.628 kb on + strandat 708.629 kb on - strandat 708.722 kb on + strandat 708.723 kb on - strandat 708.766 kb on + strandat 708.766 kb on + strandat 708.766 kb on + strandat 708.766 kb on + strandat 708.766 kb on + strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.767 kb on - strandat 708.823 kb on + strandat 708.824 kb on - strandat 708.845 kb on + strandat 708.845 kb on + strandat 708.845 kb on + strandat 708.845 kb on + strandat 708.845 kb on + strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.846 kb on - strandat 708.922 kb on + strandat 709.407 kb on + strand, within AMB_RS03385at 709.407 kb on + strand, within AMB_RS03385at 709.408 kb on - strand, within AMB_RS03385at 709.411 kb on + strand, within AMB_RS03385at 709.412 kb on - strand, within AMB_RS03385at 709.412 kb on - strand, within AMB_RS03385at 709.412 kb on - strand, within AMB_RS03385at 709.412 kb on - strand, within AMB_RS03385at 709.486 kb on + strand, within AMB_RS03385at 709.550 kb on + strand, within AMB_RS03385at 709.550 kb on + strand, within AMB_RS03385at 709.551 kb on - strand, within AMB_RS03385at 709.590 kb on + strand, within AMB_RS03385at 709.590 kb on + strand, within AMB_RS03385at 709.590 kb on + strand, within AMB_RS03385at 709.590 kb on + strand, within AMB_RS03385at 709.591 kb on - strand, within AMB_RS03385at 709.591 kb on - strand, within AMB_RS03385at 709.591 kb on - strand, within AMB_RS03385

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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706,421 - -0.3
706,421 - -0.8
706,421 - -0.1
706,421 - -0.1
706,424 + AMB_RS03370 0.10 -1.5
706,424 + AMB_RS03370 0.10 +0.2
706,424 + AMB_RS03370 0.10 -0.5
706,424 + AMB_RS03370 0.10 -1.7
706,424 + AMB_RS03370 0.10 +0.2
706,502 + AMB_RS03370 0.22 -0.0
706,503 - AMB_RS03370 0.22 -0.3
706,512 + AMB_RS03370 0.23 -0.0
706,512 + AMB_RS03370 0.23 -0.1
706,512 + AMB_RS03370 0.23 +0.0
706,513 - AMB_RS03370 0.23 +0.3
706,513 - AMB_RS03370 0.23 +0.6
706,513 - AMB_RS03370 0.23 -1.2
706,513 - AMB_RS03370 0.23 -0.3
706,555 - AMB_RS03370 0.29 -1.1
706,613 + AMB_RS03370 0.38 -0.0
706,632 + AMB_RS03370 0.41 -1.5
706,633 - AMB_RS03370 0.41 -0.1
706,651 + AMB_RS03370 0.43 +0.6
706,652 - AMB_RS03370 0.44 -1.7
706,826 + AMB_RS03370 0.69 +0.1
706,868 + AMB_RS03370 0.75 -0.8
706,868 + AMB_RS03370 0.75 -2.4
706,907 + AMB_RS03370 0.81 -2.0
706,930 - AMB_RS03370 0.84 -0.6
707,009 + -0.1
707,009 + -1.5
707,010 - +0.2
707,010 - +0.8
707,010 - -0.1
707,010 - -0.7
707,022 - -0.8
707,022 - +0.2
707,086 + -1.7
707,120 + -1.3
707,158 - +0.1
707,175 + -0.1
707,175 + +0.0
707,178 + -0.3
707,179 - -1.3
707,206 + AMB_RS03375 0.22 -0.8
707,468 - -0.1
707,468 - -0.1
707,482 + -0.2
707,482 + -0.4
707,482 + -0.1
707,482 + -0.3
707,482 + -0.1
707,483 - -0.1
707,483 - +1.0
707,483 - -1.3
707,518 + AMB_RS03380 0.12 -2.1
707,518 + AMB_RS03380 0.12 -0.1
707,518 + AMB_RS03380 0.12 +0.0
707,518 + AMB_RS03380 0.12 -0.5
707,519 - AMB_RS03380 0.12 +0.8
707,519 - AMB_RS03380 0.12 -0.5
707,519 - AMB_RS03380 0.12 +0.2
707,712 + AMB_RS03380 0.28 -0.1
707,713 - AMB_RS03380 0.28 -0.2
707,713 - AMB_RS03380 0.28 -1.8
707,740 + AMB_RS03380 0.30 -0.2
707,786 - AMB_RS03380 0.34 -0.1
707,786 - AMB_RS03380 0.34 -0.8
707,853 + AMB_RS03380 0.39 -0.5
707,877 + AMB_RS03380 0.41 +0.5
707,877 + AMB_RS03380 0.41 -1.5
707,974 + AMB_RS03380 0.49 +0.0
707,974 + AMB_RS03380 0.49 +0.2
707,974 + AMB_RS03380 0.49 +0.0
707,974 + AMB_RS03380 0.49 +0.7
707,974 + AMB_RS03380 0.49 -0.2
707,975 - AMB_RS03380 0.49 +0.4
707,975 - AMB_RS03380 0.49 -0.5
707,975 - AMB_RS03380 0.49 +0.8
707,975 - AMB_RS03380 0.49 -0.3
707,976 + AMB_RS03380 0.50 +0.0
707,976 + AMB_RS03380 0.50 -0.3
708,205 + AMB_RS03380 0.68 -1.7
708,205 + AMB_RS03380 0.68 -2.6
708,205 + AMB_RS03380 0.68 -0.4
708,205 + AMB_RS03380 0.68 -2.4
708,205 + AMB_RS03380 0.68 +0.4
708,205 + AMB_RS03380 0.68 +0.5
708,205 + AMB_RS03380 0.68 -0.2
708,206 - AMB_RS03380 0.68 -0.8
708,206 - AMB_RS03380 0.68 -0.8
708,206 - AMB_RS03380 0.68 -1.1
708,206 - AMB_RS03380 0.68 +1.2
708,206 - AMB_RS03380 0.68 +0.0
708,206 - AMB_RS03380 0.68 +1.1
708,208 + AMB_RS03380 0.69 -0.3
708,208 + AMB_RS03380 0.69 -0.0
708,208 + AMB_RS03380 0.69 -0.1
708,209 - AMB_RS03380 0.69 -0.3
708,209 - AMB_RS03380 0.69 -2.0
708,209 - AMB_RS03380 0.69 -0.1
708,209 - AMB_RS03380 0.69 -0.1
708,209 - AMB_RS03380 0.69 +0.4
708,316 + AMB_RS03380 0.77 +0.7
708,317 - AMB_RS03380 0.77 +0.1
708,317 - AMB_RS03380 0.77 -0.1
708,344 + AMB_RS03380 0.80 +0.5
708,344 + AMB_RS03380 0.80 +0.2
708,344 + AMB_RS03380 0.80 -2.0
708,344 + AMB_RS03380 0.80 +1.5
708,345 - AMB_RS03380 0.80 +0.1
708,420 + AMB_RS03380 0.86 -0.3
708,421 - AMB_RS03380 0.86 -1.1
708,471 - +0.1
708,482 + +0.4
708,561 + -0.1
708,581 + -3.0
708,581 + -1.5
708,581 + +0.4
708,590 - +0.4
708,628 + -1.5
708,628 + -1.5
708,628 + +0.1
708,628 + -0.2
708,628 + +0.5
708,629 - -0.2
708,722 + -2.5
708,723 - -1.3
708,766 + -0.8
708,766 + -0.8
708,766 + -0.1
708,766 + -0.3
708,766 + +0.2
708,767 - -0.7
708,767 - +1.5
708,767 - -1.2
708,767 - -0.0
708,767 - +0.2
708,767 - -0.0
708,767 - +0.6
708,823 + -0.2
708,824 - -0.5
708,845 + -0.5
708,845 + -0.8
708,845 + -2.5
708,845 + -0.5
708,845 + -0.1
708,846 - -2.4
708,846 - -1.3
708,846 - -2.8
708,846 - +0.3
708,846 - +0.3
708,846 - -0.1
708,846 - +0.4
708,922 + -0.5
709,407 + AMB_RS03385 0.15 -0.9
709,407 + AMB_RS03385 0.15 -0.5
709,408 - AMB_RS03385 0.15 +0.5
709,411 + AMB_RS03385 0.15 +0.2
709,412 - AMB_RS03385 0.15 -0.8
709,412 - AMB_RS03385 0.15 -1.7
709,412 - AMB_RS03385 0.15 +0.4
709,412 - AMB_RS03385 0.15 -2.0
709,486 + AMB_RS03385 0.20 +0.3
709,550 + AMB_RS03385 0.24 -1.4
709,550 + AMB_RS03385 0.24 -0.2
709,551 - AMB_RS03385 0.24 -1.7
709,590 + AMB_RS03385 0.27 +0.6
709,590 + AMB_RS03385 0.27 -2.3
709,590 + AMB_RS03385 0.27 +0.5
709,590 + AMB_RS03385 0.27 -2.4
709,591 - AMB_RS03385 0.27 -0.8
709,591 - AMB_RS03385 0.27 +0.6
709,591 - AMB_RS03385 0.27 +0.0

Or see this region's nucleotide sequence