Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02980 and AMB_RS02985 are separated by 6 nucleotides AMB_RS02985 and AMB_RS02990 are separated by 114 nucleotides AMB_RS02990 and AMB_RS02995 are separated by 9 nucleotides
AMB_RS02980: AMB_RS02980 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 624,049 to 625,356
_RS02980
AMB_RS02985: AMB_RS02985 - UTP--glucose-1-phosphate uridylyltransferase, at 625,363 to 626,238
_RS02985
AMB_RS02990: AMB_RS02990 - hypothetical protein, at 626,353 to 626,838
_RS02990
AMB_RS02995: AMB_RS02995 - anti-sigma factor antagonist, at 626,848 to 627,246
_RS02995
Position (kb) 625
626
627 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 625.735 kb on - strand, within AMB_RS02985 at 626.341 kb on + strand at 626.362 kb on + strand at 626.362 kb on + strand at 626.363 kb on - strand at 626.849 kb on + strand at 626.850 kb on - strand at 627.084 kb on + strand, within AMB_RS02995 at 627.084 kb on + strand, within AMB_RS02995 at 627.084 kb on + strand, within AMB_RS02995 at 627.085 kb on - strand, within AMB_RS02995 at 627.086 kb on + strand, within AMB_RS02995 at 627.156 kb on - strand, within AMB_RS02995 at 627.187 kb on + strand, within AMB_RS02995 at 627.187 kb on + strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.188 kb on - strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.192 kb on + strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.193 kb on - strand, within AMB_RS02995 at 627.204 kb on + strand, within AMB_RS02995 at 627.205 kb on - strand, within AMB_RS02995 at 627.235 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 625,735 - AMB_RS02985 0.42 -0.7 626,341 + +0.6 626,362 + -0.0 626,362 + -1.3 626,363 - -0.8 626,849 + +0.0 626,850 - +0.7 627,084 + AMB_RS02995 0.59 +0.5 627,084 + AMB_RS02995 0.59 -1.1 627,084 + AMB_RS02995 0.59 -1.3 627,085 - AMB_RS02995 0.59 +0.3 627,086 + AMB_RS02995 0.60 -0.5 627,156 - AMB_RS02995 0.77 +0.6 627,187 + AMB_RS02995 0.85 +0.6 627,187 + AMB_RS02995 0.85 +0.5 627,188 - AMB_RS02995 0.85 -0.2 627,188 - AMB_RS02995 0.85 -0.8 627,188 - AMB_RS02995 0.85 -1.1 627,188 - AMB_RS02995 0.85 +0.4 627,192 + AMB_RS02995 0.86 -1.3 627,192 + AMB_RS02995 0.86 -0.5 627,192 + AMB_RS02995 0.86 +0.5 627,193 - AMB_RS02995 0.86 -0.3 627,193 - AMB_RS02995 0.86 -2.7 627,193 - AMB_RS02995 0.86 -1.5 627,193 - AMB_RS02995 0.86 -0.1 627,193 - AMB_RS02995 0.86 -0.0 627,204 + AMB_RS02995 0.89 -3.6 627,205 - AMB_RS02995 0.89 -0.2 627,235 + +0.7
Or see this region's nucleotide sequence