Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02920 and AMB_RS02925 are separated by 4 nucleotides AMB_RS02925 and AMB_RS02930 are separated by 7 nucleotides AMB_RS02930 and AMB_RS02935 are separated by 76 nucleotides
AMB_RS02920: AMB_RS02920 - ATP-dependent protease, at 609,865 to 612,321
_RS02920
AMB_RS02925: AMB_RS02925 - spermidine/putrescine ABC transporter substrate-binding protein, at 612,326 to 613,369
_RS02925
AMB_RS02930: AMB_RS02930 - hypothetical protein, at 613,377 to 613,901
_RS02930
AMB_RS02935: AMB_RS02935 - PAS domain-containing sensor histidine kinase, at 613,978 to 616,245
_RS02935
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 611.406 kb on + strand, within AMB_RS02920 at 611.878 kb on + strand, within AMB_RS02920 at 611.879 kb on - strand, within AMB_RS02920 at 612.065 kb on + strand, within AMB_RS02920 at 612.128 kb on - strand at 612.319 kb on + strand at 612.320 kb on - strand at 612.320 kb on - strand at 612.320 kb on - strand at 612.416 kb on + strand at 612.416 kb on + strand at 612.533 kb on + strand, within AMB_RS02925 at 612.557 kb on + strand, within AMB_RS02925 at 612.557 kb on + strand, within AMB_RS02925 at 612.558 kb on - strand, within AMB_RS02925 at 612.678 kb on - strand, within AMB_RS02925 at 612.678 kb on - strand, within AMB_RS02925 at 612.839 kb on + strand, within AMB_RS02925 at 613.037 kb on + strand, within AMB_RS02925 at 613.037 kb on + strand, within AMB_RS02925 at 613.037 kb on + strand, within AMB_RS02925 at 613.037 kb on + strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.038 kb on - strand, within AMB_RS02925 at 613.044 kb on - strand, within AMB_RS02925 at 613.181 kb on + strand, within AMB_RS02925 at 613.181 kb on + strand, within AMB_RS02925 at 613.181 kb on + strand, within AMB_RS02925 at 613.182 kb on - strand, within AMB_RS02925 at 613.182 kb on - strand, within AMB_RS02925 at 613.182 kb on - strand, within AMB_RS02925 at 613.182 kb on - strand, within AMB_RS02925 at 613.539 kb on - strand, within AMB_RS02930 at 613.539 kb on - strand, within AMB_RS02930 at 613.609 kb on + strand, within AMB_RS02930 at 613.609 kb on + strand, within AMB_RS02930 at 613.610 kb on - strand, within AMB_RS02930 at 613.610 kb on - strand, within AMB_RS02930 at 613.610 kb on - strand, within AMB_RS02930 at 613.610 kb on - strand, within AMB_RS02930 at 613.639 kb on + strand, within AMB_RS02930 at 613.640 kb on - strand, within AMB_RS02930 at 613.640 kb on - strand, within AMB_RS02930 at 613.640 kb on - strand, within AMB_RS02930 at 613.640 kb on - strand, within AMB_RS02930 at 613.729 kb on + strand, within AMB_RS02930 at 613.729 kb on + strand, within AMB_RS02930 at 613.730 kb on - strand, within AMB_RS02930 at 613.852 kb on + strand at 613.852 kb on + strand at 613.853 kb on - strand at 613.853 kb on - strand at 613.853 kb on - strand at 613.853 kb on - strand at 613.884 kb on + strand at 613.884 kb on + strand at 613.885 kb on - strand at 613.885 kb on - strand at 613.885 kb on - strand at 613.885 kb on - strand at 613.922 kb on + strand at 613.922 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 611,406 + AMB_RS02920 0.63 +0.2 611,878 + AMB_RS02920 0.82 -2.9 611,879 - AMB_RS02920 0.82 -1.4 612,065 + AMB_RS02920 0.90 -1.5 612,128 - +0.3 612,319 + -0.1 612,320 - +0.6 612,320 - +0.3 612,320 - -1.3 612,416 + +0.3 612,416 + -0.8 612,533 + AMB_RS02925 0.20 -0.5 612,557 + AMB_RS02925 0.22 +0.6 612,557 + AMB_RS02925 0.22 -0.7 612,558 - AMB_RS02925 0.22 -0.2 612,678 - AMB_RS02925 0.34 +0.4 612,678 - AMB_RS02925 0.34 -1.1 612,839 + AMB_RS02925 0.49 -0.1 613,037 + AMB_RS02925 0.68 -2.0 613,037 + AMB_RS02925 0.68 -2.0 613,037 + AMB_RS02925 0.68 -0.5 613,037 + AMB_RS02925 0.68 +0.0 613,038 - AMB_RS02925 0.68 -3.0 613,038 - AMB_RS02925 0.68 +1.5 613,038 - AMB_RS02925 0.68 -0.3 613,038 - AMB_RS02925 0.68 +0.5 613,038 - AMB_RS02925 0.68 +0.0 613,038 - AMB_RS02925 0.68 +0.2 613,044 - AMB_RS02925 0.69 -0.5 613,181 + AMB_RS02925 0.82 +0.5 613,181 + AMB_RS02925 0.82 -2.1 613,181 + AMB_RS02925 0.82 -1.1 613,182 - AMB_RS02925 0.82 -1.5 613,182 - AMB_RS02925 0.82 -0.8 613,182 - AMB_RS02925 0.82 -0.8 613,182 - AMB_RS02925 0.82 +0.3 613,539 - AMB_RS02930 0.31 -0.0 613,539 - AMB_RS02930 0.31 -1.7 613,609 + AMB_RS02930 0.44 -0.0 613,609 + AMB_RS02930 0.44 -2.1 613,610 - AMB_RS02930 0.44 -0.4 613,610 - AMB_RS02930 0.44 -0.4 613,610 - AMB_RS02930 0.44 +0.8 613,610 - AMB_RS02930 0.44 -1.5 613,639 + AMB_RS02930 0.50 -2.2 613,640 - AMB_RS02930 0.50 -0.0 613,640 - AMB_RS02930 0.50 +0.8 613,640 - AMB_RS02930 0.50 -1.5 613,640 - AMB_RS02930 0.50 -0.0 613,729 + AMB_RS02930 0.67 -2.4 613,729 + AMB_RS02930 0.67 +1.5 613,730 - AMB_RS02930 0.67 +0.7 613,852 + -2.8 613,852 + -0.4 613,853 - +0.7 613,853 - -2.9 613,853 - -0.1 613,853 - -2.2 613,884 + -0.9 613,884 + -0.0 613,885 - +0.2 613,885 - +0.4 613,885 - -2.0 613,885 - -0.7 613,922 + +0.2 613,922 + +0.2
Or see this region's nucleotide sequence