Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS02635 and AMB_RS02640 are separated by 72 nucleotides AMB_RS02640 and AMB_RS02645 are separated by 100 nucleotides AMB_RS02645 and AMB_RS02650 are separated by 37 nucleotides
AMB_RS02635: AMB_RS02635 - type I glyceraldehyde-3-phosphate dehydrogenase, at 548,870 to 549,868
_RS02635
AMB_RS02640: AMB_RS02640 - phosphoglycerate kinase, at 549,941 to 551,188
_RS02640
AMB_RS02645: AMB_RS02645 - precorrin-4 C(11)-methyltransferase, at 551,289 to 552,050
_RS02645
AMB_RS02650: AMB_RS02650 - uroporphyrinogen-III C-methyltransferase, at 552,088 to 552,870
_RS02650
Position (kb) 549
550
551
552 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 549.866 kb on + strand at 549.866 kb on + strand at 549.866 kb on + strand at 549.866 kb on + strand at 549.866 kb on + strand at 549.866 kb on + strand at 549.866 kb on + strand at 549.866 kb on + strand at 549.866 kb on + strand at 552.072 kb on + strand at 552.072 kb on + strand at 552.072 kb on + strand at 552.072 kb on + strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.073 kb on - strand at 552.074 kb on + strand at 552.074 kb on + strand at 552.074 kb on + strand at 552.074 kb on + strand at 552.074 kb on + strand at 552.074 kb on + strand at 552.075 kb on - strand at 552.075 kb on - strand at 552.075 kb on - strand at 552.075 kb on - strand at 552.075 kb on - strand at 552.075 kb on - strand at 552.075 kb on - strand at 552.075 kb on - strand at 552.077 kb on + strand at 552.078 kb on - strand at 552.079 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 549,866 + -0.0 549,866 + -1.5 549,866 + -0.2 549,866 + -0.1 549,866 + -1.1 549,866 + -0.8 549,866 + -0.5 549,866 + -1.5 549,866 + +0.5 552,072 + +0.0 552,072 + -2.6 552,072 + -1.5 552,072 + -2.0 552,073 - -3.0 552,073 - -0.8 552,073 - -1.0 552,073 - -1.1 552,073 - -0.4 552,073 - -0.1 552,073 - -3.2 552,073 - -1.5 552,073 - -4.5 552,073 - -0.6 552,073 - -0.0 552,073 - -2.7 552,073 - +1.5 552,074 + -0.1 552,074 + -0.2 552,074 + -2.6 552,074 + +0.2 552,074 + -0.8 552,074 + -3.4 552,075 - -0.7 552,075 - +0.1 552,075 - -0.7 552,075 - -1.0 552,075 - +1.5 552,075 - -0.5 552,075 - -1.7 552,075 - -0.8 552,077 + +0.3 552,078 - -1.3 552,079 - +0.2
Or see this region's nucleotide sequence