Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS02525

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS02520 and AMB_RS02525 are separated by 111 nucleotidesAMB_RS02525 and AMB_RS02530 are separated by 136 nucleotides AMB_RS02520: AMB_RS02520 - hypothetical protein, at 521,131 to 522,141 _RS02520 AMB_RS02525: AMB_RS02525 - U32 family peptidase, at 522,253 to 523,158 _RS02525 AMB_RS02530: AMB_RS02530 - U32 family peptidase, at 523,295 to 524,326 _RS02530 Position (kb) 522 523 524Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 521.282 kb on - strand, within AMB_RS02520at 521.357 kb on + strand, within AMB_RS02520at 521.357 kb on + strand, within AMB_RS02520at 521.358 kb on - strand, within AMB_RS02520at 521.358 kb on - strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.429 kb on + strand, within AMB_RS02520at 521.430 kb on - strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.510 kb on + strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.511 kb on - strand, within AMB_RS02520at 521.583 kb on + strand, within AMB_RS02520at 521.585 kb on + strand, within AMB_RS02520at 521.586 kb on - strand, within AMB_RS02520at 521.615 kb on + strand, within AMB_RS02520at 521.615 kb on + strand, within AMB_RS02520at 521.798 kb on + strand, within AMB_RS02520at 521.798 kb on + strand, within AMB_RS02520at 521.799 kb on - strand, within AMB_RS02520at 521.799 kb on - strand, within AMB_RS02520at 522.050 kb on + strandat 522.050 kb on + strandat 522.051 kb on - strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.219 kb on + strandat 522.299 kb on + strandat 522.299 kb on + strandat 522.300 kb on - strandat 522.300 kb on - strandat 522.300 kb on - strandat 522.300 kb on - strandat 522.300 kb on - strandat 522.497 kb on + strand, within AMB_RS02525at 522.497 kb on + strand, within AMB_RS02525at 522.498 kb on - strand, within AMB_RS02525at 522.498 kb on - strand, within AMB_RS02525at 522.588 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.674 kb on - strand, within AMB_RS02525at 522.794 kb on + strand, within AMB_RS02525at 522.794 kb on + strand, within AMB_RS02525at 522.794 kb on + strand, within AMB_RS02525at 522.794 kb on + strand, within AMB_RS02525at 522.795 kb on - strand, within AMB_RS02525at 522.795 kb on - strand, within AMB_RS02525at 522.795 kb on - strand, within AMB_RS02525at 522.795 kb on - strand, within AMB_RS02525at 522.892 kb on + strand, within AMB_RS02525at 522.893 kb on - strand, within AMB_RS02525at 523.085 kb on + strandat 523.085 kb on + strandat 523.223 kb on + strandat 523.434 kb on + strand, within AMB_RS02530at 523.434 kb on + strand, within AMB_RS02530at 523.434 kb on + strand, within AMB_RS02530at 523.435 kb on - strand, within AMB_RS02530at 523.435 kb on - strand, within AMB_RS02530at 523.542 kb on + strand, within AMB_RS02530at 523.542 kb on + strand, within AMB_RS02530at 523.542 kb on + strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.543 kb on - strand, within AMB_RS02530at 523.731 kb on + strand, within AMB_RS02530at 523.731 kb on + strand, within AMB_RS02530at 523.732 kb on - strand, within AMB_RS02530at 523.732 kb on - strand, within AMB_RS02530at 523.732 kb on - strand, within AMB_RS02530at 523.890 kb on + strand, within AMB_RS02530at 523.891 kb on - strand, within AMB_RS02530at 524.118 kb on + strand, within AMB_RS02530at 524.118 kb on + strand, within AMB_RS02530

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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521,282 - AMB_RS02520 0.15 -0.5
521,357 + AMB_RS02520 0.22 -0.5
521,357 + AMB_RS02520 0.22 -1.1
521,358 - AMB_RS02520 0.22 -0.5
521,358 - AMB_RS02520 0.22 -3.2
521,429 + AMB_RS02520 0.29 -1.5
521,429 + AMB_RS02520 0.29 -0.8
521,429 + AMB_RS02520 0.29 -2.5
521,430 - AMB_RS02520 0.30 -1.8
521,510 + AMB_RS02520 0.37 -3.0
521,510 + AMB_RS02520 0.37 -2.3
521,510 + AMB_RS02520 0.37 +0.1
521,511 - AMB_RS02520 0.38 -2.3
521,511 - AMB_RS02520 0.38 -2.2
521,511 - AMB_RS02520 0.38 -1.3
521,583 + AMB_RS02520 0.45 -0.5
521,585 + AMB_RS02520 0.45 -2.7
521,586 - AMB_RS02520 0.45 -1.8
521,615 + AMB_RS02520 0.48 -0.3
521,615 + AMB_RS02520 0.48 -0.1
521,798 + AMB_RS02520 0.66 +0.3
521,798 + AMB_RS02520 0.66 -3.3
521,799 - AMB_RS02520 0.66 +1.5
521,799 - AMB_RS02520 0.66 -1.1
522,050 + +0.1
522,050 + +0.4
522,051 - -0.5
522,219 + -1.5
522,219 + +0.0
522,219 + -0.3
522,219 + -0.8
522,219 + -0.8
522,219 + -0.1
522,219 + -0.3
522,299 + -3.7
522,299 + -1.8
522,300 - -1.8
522,300 - -1.9
522,300 - -2.6
522,300 - -1.3
522,300 - -3.5
522,497 + AMB_RS02525 0.27 -1.7
522,497 + AMB_RS02525 0.27 -4.4
522,498 - AMB_RS02525 0.27 -0.1
522,498 - AMB_RS02525 0.27 -2.2
522,588 - AMB_RS02525 0.37 -2.7
522,674 - AMB_RS02525 0.46 -3.5
522,674 - AMB_RS02525 0.46 -3.7
522,674 - AMB_RS02525 0.46 -0.8
522,674 - AMB_RS02525 0.46 -2.5
522,674 - AMB_RS02525 0.46 -3.4
522,794 + AMB_RS02525 0.60 -3.3
522,794 + AMB_RS02525 0.60 -2.7
522,794 + AMB_RS02525 0.60 -0.8
522,794 + AMB_RS02525 0.60 -3.8
522,795 - AMB_RS02525 0.60 -4.1
522,795 - AMB_RS02525 0.60 -3.7
522,795 - AMB_RS02525 0.60 -4.3
522,795 - AMB_RS02525 0.60 -3.6
522,892 + AMB_RS02525 0.71 -3.3
522,893 - AMB_RS02525 0.71 -3.8
523,085 + -3.6
523,085 + -3.0
523,223 + -1.3
523,434 + AMB_RS02530 0.13 -2.4
523,434 + AMB_RS02530 0.13 -0.1
523,434 + AMB_RS02530 0.13 -2.4
523,435 - AMB_RS02530 0.14 -2.6
523,435 - AMB_RS02530 0.14 -1.1
523,542 + AMB_RS02530 0.24 +0.5
523,542 + AMB_RS02530 0.24 -0.5
523,542 + AMB_RS02530 0.24 -0.5
523,543 - AMB_RS02530 0.24 +1.5
523,543 - AMB_RS02530 0.24 -3.7
523,543 - AMB_RS02530 0.24 -3.8
523,543 - AMB_RS02530 0.24 -0.8
523,543 - AMB_RS02530 0.24 -1.3
523,543 - AMB_RS02530 0.24 -3.5
523,731 + AMB_RS02530 0.42 +1.5
523,731 + AMB_RS02530 0.42 -1.3
523,732 - AMB_RS02530 0.42 -2.7
523,732 - AMB_RS02530 0.42 -1.6
523,732 - AMB_RS02530 0.42 -1.9
523,890 + AMB_RS02530 0.58 -2.8
523,891 - AMB_RS02530 0.58 -3.3
524,118 + AMB_RS02530 0.80 -2.9
524,118 + AMB_RS02530 0.80 -1.1

Or see this region's nucleotide sequence