Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23140 and AMB_RS02455 overlap by 4 nucleotides AMB_RS02455 and AMB_RS02460 are separated by 16 nucleotides AMB_RS02460 and AMB_RS02465 are separated by 8 nucleotides AMB_RS02465 and AMB_RS02470 are separated by 3 nucleotides
AMB_RS23140: AMB_RS23140 - hypothetical protein, at 506,841 to 509,726
_RS23140
AMB_RS02455: AMB_RS02455 - hypothetical protein, at 509,723 to 510,328
_RS02455
AMB_RS02460: AMB_RS02460 - hypothetical protein, at 510,345 to 511,115
_RS02460
AMB_RS02465: AMB_RS02465 - hypothetical protein, at 511,124 to 511,480
_RS02465
AMB_RS02470: AMB_RS02470 - DNA methyltransferase, at 511,484 to 512,650
_RS02470
Position (kb) 510
511
512 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.385 kb on + strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.386 kb on - strand, within AMB_RS23140 at 509.422 kb on - strand, within AMB_RS23140 at 509.774 kb on + strand at 509.774 kb on + strand at 509.774 kb on + strand at 509.774 kb on + strand at 509.774 kb on + strand at 509.775 kb on - strand at 509.775 kb on - strand at 509.775 kb on - strand at 509.775 kb on - strand at 510.180 kb on - strand, within AMB_RS02455 at 510.180 kb on - strand, within AMB_RS02455 at 510.180 kb on - strand, within AMB_RS02455 at 510.183 kb on - strand, within AMB_RS02455 at 510.183 kb on - strand, within AMB_RS02455 at 510.390 kb on + strand at 510.390 kb on + strand at 510.390 kb on + strand at 510.390 kb on + strand at 510.390 kb on + strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.391 kb on - strand at 510.447 kb on + strand, within AMB_RS02460 at 510.447 kb on + strand, within AMB_RS02460 at 510.447 kb on + strand, within AMB_RS02460 at 510.562 kb on - strand, within AMB_RS02460 at 510.562 kb on - strand, within AMB_RS02460 at 510.562 kb on - strand, within AMB_RS02460 at 510.564 kb on + strand, within AMB_RS02460 at 510.564 kb on + strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.565 kb on - strand, within AMB_RS02460 at 510.659 kb on + strand, within AMB_RS02460 at 510.687 kb on - strand, within AMB_RS02460 at 510.716 kb on + strand, within AMB_RS02460 at 510.717 kb on - strand, within AMB_RS02460 at 510.717 kb on - strand, within AMB_RS02460 at 510.717 kb on - strand, within AMB_RS02460 at 510.990 kb on + strand, within AMB_RS02460 at 510.991 kb on - strand, within AMB_RS02460 at 510.991 kb on - strand, within AMB_RS02460 at 510.991 kb on - strand, within AMB_RS02460 at 511.166 kb on + strand, within AMB_RS02465 at 511.166 kb on + strand, within AMB_RS02465 at 511.226 kb on + strand, within AMB_RS02465 at 511.226 kb on + strand, within AMB_RS02465 at 511.226 kb on + strand, within AMB_RS02465 at 511.226 kb on + strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.227 kb on - strand, within AMB_RS02465 at 511.304 kb on + strand, within AMB_RS02465 at 511.385 kb on + strand, within AMB_RS02465 at 511.385 kb on + strand, within AMB_RS02465 at 511.385 kb on + strand, within AMB_RS02465 at 511.385 kb on + strand, within AMB_RS02465 at 511.385 kb on + strand, within AMB_RS02465 at 511.385 kb on + strand, within AMB_RS02465 at 511.386 kb on - strand, within AMB_RS02465 at 511.386 kb on - strand, within AMB_RS02465 at 511.386 kb on - strand, within AMB_RS02465 at 511.427 kb on + strand, within AMB_RS02465 at 511.427 kb on + strand, within AMB_RS02465 at 511.427 kb on + strand, within AMB_RS02465 at 511.427 kb on + strand, within AMB_RS02465 at 511.428 kb on - strand, within AMB_RS02465 at 511.428 kb on - strand, within AMB_RS02465 at 511.428 kb on - strand, within AMB_RS02465 at 511.428 kb on - strand, within AMB_RS02465 at 511.431 kb on + strand, within AMB_RS02465 at 511.431 kb on + strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.432 kb on - strand, within AMB_RS02465 at 511.435 kb on + strand, within AMB_RS02465 at 511.435 kb on + strand, within AMB_RS02465 at 511.436 kb on - strand, within AMB_RS02465 at 511.436 kb on - strand, within AMB_RS02465 at 511.436 kb on - strand, within AMB_RS02465 at 511.436 kb on - strand, within AMB_RS02465 at 511.461 kb on - strand at 511.461 kb on - strand at 511.461 kb on - strand at 511.576 kb on + strand at 511.576 kb on + strand at 511.763 kb on + strand, within AMB_RS02470 at 511.764 kb on - strand, within AMB_RS02470 at 511.880 kb on + strand, within AMB_RS02470 at 511.881 kb on - strand, within AMB_RS02470 at 511.949 kb on + strand, within AMB_RS02470 at 511.950 kb on - strand, within AMB_RS02470
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 509,385 + AMB_RS23140 0.88 -1.8 509,385 + AMB_RS23140 0.88 -0.5 509,385 + AMB_RS23140 0.88 -2.6 509,385 + AMB_RS23140 0.88 -1.5 509,385 + AMB_RS23140 0.88 -3.2 509,385 + AMB_RS23140 0.88 -0.8 509,386 - AMB_RS23140 0.88 -1.3 509,386 - AMB_RS23140 0.88 -1.3 509,386 - AMB_RS23140 0.88 -1.8 509,386 - AMB_RS23140 0.88 -0.5 509,386 - AMB_RS23140 0.88 +0.7 509,386 - AMB_RS23140 0.88 +0.5 509,386 - AMB_RS23140 0.88 -0.1 509,386 - AMB_RS23140 0.88 -0.3 509,386 - AMB_RS23140 0.88 +1.5 509,422 - AMB_RS23140 0.89 +0.2 509,774 + +0.7 509,774 + -0.1 509,774 + +0.2 509,774 + -0.2 509,774 + -2.5 509,775 - +0.5 509,775 - -0.5 509,775 - -0.1 509,775 - -1.1 510,180 - AMB_RS02455 0.75 -1.1 510,180 - AMB_RS02455 0.75 +0.2 510,180 - AMB_RS02455 0.75 +0.5 510,183 - AMB_RS02455 0.76 -1.3 510,183 - AMB_RS02455 0.76 +0.5 510,390 + -0.2 510,390 + +0.0 510,390 + +0.1 510,390 + +0.2 510,390 + +0.7 510,391 - +1.1 510,391 - +0.3 510,391 - -0.5 510,391 - -1.1 510,391 - -0.4 510,391 - -0.1 510,391 - +0.1 510,447 + AMB_RS02460 0.13 +1.5 510,447 + AMB_RS02460 0.13 +0.6 510,447 + AMB_RS02460 0.13 -1.5 510,562 - AMB_RS02460 0.28 -0.1 510,562 - AMB_RS02460 0.28 +0.2 510,562 - AMB_RS02460 0.28 +0.5 510,564 + AMB_RS02460 0.28 +0.2 510,564 + AMB_RS02460 0.28 -0.0 510,565 - AMB_RS02460 0.29 -1.9 510,565 - AMB_RS02460 0.29 +0.5 510,565 - AMB_RS02460 0.29 -2.6 510,565 - AMB_RS02460 0.29 +0.3 510,565 - AMB_RS02460 0.29 +0.4 510,659 + AMB_RS02460 0.41 +1.5 510,687 - AMB_RS02460 0.44 -0.2 510,716 + AMB_RS02460 0.48 -0.5 510,717 - AMB_RS02460 0.48 -0.0 510,717 - AMB_RS02460 0.48 -0.5 510,717 - AMB_RS02460 0.48 +0.1 510,990 + AMB_RS02460 0.84 -2.6 510,991 - AMB_RS02460 0.84 +0.5 510,991 - AMB_RS02460 0.84 +1.0 510,991 - AMB_RS02460 0.84 +0.5 511,166 + AMB_RS02465 0.12 +0.4 511,166 + AMB_RS02465 0.12 +0.5 511,226 + AMB_RS02465 0.29 -1.8 511,226 + AMB_RS02465 0.29 -0.1 511,226 + AMB_RS02465 0.29 +0.6 511,226 + AMB_RS02465 0.29 -0.1 511,227 - AMB_RS02465 0.29 -0.8 511,227 - AMB_RS02465 0.29 -1.3 511,227 - AMB_RS02465 0.29 -0.1 511,227 - AMB_RS02465 0.29 -1.1 511,227 - AMB_RS02465 0.29 -0.0 511,304 + AMB_RS02465 0.50 -0.1 511,385 + AMB_RS02465 0.73 -1.9 511,385 + AMB_RS02465 0.73 -2.2 511,385 + AMB_RS02465 0.73 -0.1 511,385 + AMB_RS02465 0.73 -0.0 511,385 + AMB_RS02465 0.73 +0.4 511,385 + AMB_RS02465 0.73 -5.3 511,386 - AMB_RS02465 0.73 +0.0 511,386 - AMB_RS02465 0.73 +0.1 511,386 - AMB_RS02465 0.73 +0.3 511,427 + AMB_RS02465 0.85 -1.4 511,427 + AMB_RS02465 0.85 +0.5 511,427 + AMB_RS02465 0.85 -1.7 511,427 + AMB_RS02465 0.85 -0.0 511,428 - AMB_RS02465 0.85 -1.9 511,428 - AMB_RS02465 0.85 -0.8 511,428 - AMB_RS02465 0.85 -1.5 511,428 - AMB_RS02465 0.85 -0.5 511,431 + AMB_RS02465 0.86 +1.5 511,431 + AMB_RS02465 0.86 +0.0 511,432 - AMB_RS02465 0.86 -0.8 511,432 - AMB_RS02465 0.86 +0.5 511,432 - AMB_RS02465 0.86 -1.8 511,432 - AMB_RS02465 0.86 -0.1 511,432 - AMB_RS02465 0.86 +0.2 511,432 - AMB_RS02465 0.86 +0.0 511,432 - AMB_RS02465 0.86 -0.8 511,432 - AMB_RS02465 0.86 -0.0 511,432 - AMB_RS02465 0.86 +0.3 511,432 - AMB_RS02465 0.86 +0.2 511,432 - AMB_RS02465 0.86 -0.0 511,435 + AMB_RS02465 0.87 -0.6 511,435 + AMB_RS02465 0.87 -2.7 511,436 - AMB_RS02465 0.87 -0.1 511,436 - AMB_RS02465 0.87 +0.4 511,436 - AMB_RS02465 0.87 -0.1 511,436 - AMB_RS02465 0.87 -0.5 511,461 - -1.8 511,461 - -2.2 511,461 - +1.5 511,576 + +1.5 511,576 + -0.1 511,763 + AMB_RS02470 0.24 +0.1 511,764 - AMB_RS02470 0.24 +0.3 511,880 + AMB_RS02470 0.34 -1.1 511,881 - AMB_RS02470 0.34 -1.3 511,949 + AMB_RS02470 0.40 -1.5 511,950 - AMB_RS02470 0.40 -0.0
Or see this region's nucleotide sequence