Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01905 and AMB_RS01910 are separated by 12 nucleotides AMB_RS01910 and AMB_RS01915 are separated by 14 nucleotides AMB_RS01915 and AMB_RS01920 overlap by 1 nucleotides AMB_RS01920 and AMB_RS01925 overlap by 4 nucleotides AMB_RS01925 and AMB_RS01930 overlap by 20 nucleotides
AMB_RS01905: AMB_RS01905 - S49 family peptidase, at 405,716 to 406,948
_RS01905
AMB_RS01910: AMB_RS01910 - head decoration protein, at 406,961 to 407,350
_RS01910
AMB_RS01915: AMB_RS01915 - minor capsid protein E, at 407,365 to 408,387
_RS01915
AMB_RS01920: AMB_RS01920 - hypothetical protein, at 408,387 to 408,683
_RS01920
AMB_RS01925: AMB_RS01925 - hypothetical protein, at 408,680 to 409,318
_RS01925
AMB_RS01930: AMB_RS01930 - DUF4172 domain-containing protein, at 409,299 to 410,432
_RS01930
Position (kb) 407
408
409 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 406.376 kb on + strand, within AMB_RS01905 at 406.376 kb on + strand, within AMB_RS01905 at 406.377 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.455 kb on - strand, within AMB_RS01905 at 406.686 kb on + strand, within AMB_RS01905 at 406.687 kb on - strand, within AMB_RS01905 at 406.687 kb on - strand, within AMB_RS01905 at 406.709 kb on + strand, within AMB_RS01905 at 406.710 kb on - strand, within AMB_RS01905 at 406.946 kb on + strand at 406.946 kb on + strand at 406.946 kb on + strand at 406.946 kb on + strand at 406.946 kb on + strand at 406.947 kb on - strand at 406.947 kb on - strand at 407.024 kb on + strand, within AMB_RS01910 at 407.024 kb on + strand, within AMB_RS01910 at 407.024 kb on + strand, within AMB_RS01910 at 407.025 kb on - strand, within AMB_RS01910 at 407.449 kb on + strand at 407.449 kb on + strand at 407.449 kb on + strand at 407.449 kb on + strand at 407.449 kb on + strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.450 kb on - strand at 407.451 kb on + strand at 407.451 kb on + strand at 407.452 kb on - strand at 407.452 kb on - strand at 407.452 kb on - strand at 407.821 kb on + strand, within AMB_RS01915 at 407.822 kb on - strand, within AMB_RS01915 at 407.822 kb on - strand, within AMB_RS01915 at 407.828 kb on - strand, within AMB_RS01915 at 407.939 kb on + strand, within AMB_RS01915 at 407.940 kb on - strand, within AMB_RS01915 at 407.940 kb on - strand, within AMB_RS01915 at 407.940 kb on - strand, within AMB_RS01915 at 408.028 kb on + strand, within AMB_RS01915 at 408.028 kb on + strand, within AMB_RS01915 at 408.028 kb on + strand, within AMB_RS01915 at 408.029 kb on - strand, within AMB_RS01915 at 408.034 kb on + strand, within AMB_RS01915 at 408.034 kb on + strand, within AMB_RS01915 at 408.034 kb on + strand, within AMB_RS01915 at 408.037 kb on + strand, within AMB_RS01915 at 408.037 kb on + strand, within AMB_RS01915 at 408.115 kb on + strand, within AMB_RS01915 at 408.116 kb on - strand, within AMB_RS01915 at 408.116 kb on - strand, within AMB_RS01915 at 408.116 kb on - strand, within AMB_RS01915 at 408.217 kb on + strand, within AMB_RS01915 at 408.217 kb on + strand, within AMB_RS01915 at 408.217 kb on + strand, within AMB_RS01915 at 408.271 kb on + strand, within AMB_RS01915 at 408.271 kb on + strand, within AMB_RS01915 at 408.271 kb on + strand, within AMB_RS01915 at 408.272 kb on - strand, within AMB_RS01915 at 408.272 kb on - strand, within AMB_RS01915 at 408.272 kb on - strand, within AMB_RS01915 at 408.272 kb on - strand, within AMB_RS01915 at 408.272 kb on - strand, within AMB_RS01915 at 408.453 kb on + strand, within AMB_RS01920 at 408.453 kb on + strand, within AMB_RS01920 at 408.454 kb on - strand, within AMB_RS01920 at 408.454 kb on - strand, within AMB_RS01920 at 408.454 kb on - strand, within AMB_RS01920 at 408.668 kb on + strand at 408.668 kb on + strand at 408.669 kb on - strand at 408.867 kb on - strand, within AMB_RS01925 at 408.867 kb on - strand, within AMB_RS01925 at 409.075 kb on + strand, within AMB_RS01925 at 409.075 kb on + strand, within AMB_RS01925 at 409.076 kb on - strand, within AMB_RS01925 at 409.076 kb on - strand, within AMB_RS01925 at 409.076 kb on - strand, within AMB_RS01925 at 409.076 kb on - strand, within AMB_RS01925 at 409.076 kb on - strand, within AMB_RS01925 at 409.076 kb on - strand, within AMB_RS01925 at 409.076 kb on - strand, within AMB_RS01925 at 409.079 kb on + strand, within AMB_RS01925 at 409.080 kb on - strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.245 kb on + strand, within AMB_RS01925 at 409.246 kb on - strand, within AMB_RS01925 at 409.246 kb on - strand, within AMB_RS01925 at 409.246 kb on - strand, within AMB_RS01925 at 409.246 kb on - strand, within AMB_RS01925 at 409.246 kb on - strand, within AMB_RS01925 at 409.246 kb on - strand, within AMB_RS01925 at 409.316 kb on + strand at 409.317 kb on - strand at 409.317 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 406,376 + AMB_RS01905 0.54 +0.1 406,376 + AMB_RS01905 0.54 +0.3 406,377 - AMB_RS01905 0.54 -1.1 406,455 - AMB_RS01905 0.60 +0.6 406,455 - AMB_RS01905 0.60 -0.3 406,455 - AMB_RS01905 0.60 -1.3 406,455 - AMB_RS01905 0.60 -1.5 406,686 + AMB_RS01905 0.79 -0.1 406,687 - AMB_RS01905 0.79 -2.6 406,687 - AMB_RS01905 0.79 -1.9 406,709 + AMB_RS01905 0.81 +0.5 406,710 - AMB_RS01905 0.81 +0.1 406,946 + -1.1 406,946 + -1.1 406,946 + -1.1 406,946 + -0.1 406,946 + -2.2 406,947 - -0.5 406,947 - +0.8 407,024 + AMB_RS01910 0.16 -1.1 407,024 + AMB_RS01910 0.16 -0.1 407,024 + AMB_RS01910 0.16 -2.4 407,025 - AMB_RS01910 0.16 +0.5 407,449 + +0.1 407,449 + -1.6 407,449 + -3.2 407,449 + +0.4 407,449 + +0.2 407,450 - +0.2 407,450 - -2.5 407,450 - -0.4 407,450 - -0.1 407,450 - -0.5 407,450 - -0.1 407,451 + -0.3 407,451 + -0.6 407,452 - -1.6 407,452 - +1.5 407,452 - -0.4 407,821 + AMB_RS01915 0.45 -1.0 407,822 - AMB_RS01915 0.45 +0.1 407,822 - AMB_RS01915 0.45 +0.2 407,828 - AMB_RS01915 0.45 -0.2 407,939 + AMB_RS01915 0.56 +0.5 407,940 - AMB_RS01915 0.56 +0.6 407,940 - AMB_RS01915 0.56 -0.5 407,940 - AMB_RS01915 0.56 -1.0 408,028 + AMB_RS01915 0.65 -0.3 408,028 + AMB_RS01915 0.65 +0.2 408,028 + AMB_RS01915 0.65 -2.5 408,029 - AMB_RS01915 0.65 -1.0 408,034 + AMB_RS01915 0.65 +0.5 408,034 + AMB_RS01915 0.65 -0.0 408,034 + AMB_RS01915 0.65 +0.1 408,037 + AMB_RS01915 0.66 -0.0 408,037 + AMB_RS01915 0.66 +0.5 408,115 + AMB_RS01915 0.73 -0.1 408,116 - AMB_RS01915 0.73 -2.9 408,116 - AMB_RS01915 0.73 -1.0 408,116 - AMB_RS01915 0.73 -0.8 408,217 + AMB_RS01915 0.83 -2.5 408,217 + AMB_RS01915 0.83 -0.0 408,217 + AMB_RS01915 0.83 -0.0 408,271 + AMB_RS01915 0.89 -0.8 408,271 + AMB_RS01915 0.89 -1.3 408,271 + AMB_RS01915 0.89 -0.4 408,272 - AMB_RS01915 0.89 -0.2 408,272 - AMB_RS01915 0.89 +0.3 408,272 - AMB_RS01915 0.89 -0.3 408,272 - AMB_RS01915 0.89 -0.5 408,272 - AMB_RS01915 0.89 -2.3 408,453 + AMB_RS01920 0.22 +0.2 408,453 + AMB_RS01920 0.22 +0.3 408,454 - AMB_RS01920 0.23 +1.5 408,454 - AMB_RS01920 0.23 -1.3 408,454 - AMB_RS01920 0.23 -0.6 408,668 + -0.7 408,668 + +0.6 408,669 - -0.5 408,867 - AMB_RS01925 0.29 +0.8 408,867 - AMB_RS01925 0.29 -1.8 409,075 + AMB_RS01925 0.62 +1.5 409,075 + AMB_RS01925 0.62 +0.4 409,076 - AMB_RS01925 0.62 -1.6 409,076 - AMB_RS01925 0.62 -2.7 409,076 - AMB_RS01925 0.62 +0.0 409,076 - AMB_RS01925 0.62 +0.5 409,076 - AMB_RS01925 0.62 -0.8 409,076 - AMB_RS01925 0.62 -0.8 409,076 - AMB_RS01925 0.62 -2.1 409,079 + AMB_RS01925 0.62 -0.8 409,080 - AMB_RS01925 0.63 +0.7 409,245 + AMB_RS01925 0.88 -0.6 409,245 + AMB_RS01925 0.88 -0.8 409,245 + AMB_RS01925 0.88 -1.8 409,245 + AMB_RS01925 0.88 +1.5 409,245 + AMB_RS01925 0.88 -1.8 409,245 + AMB_RS01925 0.88 -1.1 409,245 + AMB_RS01925 0.88 -0.5 409,245 + AMB_RS01925 0.88 -0.5 409,245 + AMB_RS01925 0.88 -0.6 409,245 + AMB_RS01925 0.88 -0.1 409,245 + AMB_RS01925 0.88 +0.3 409,246 - AMB_RS01925 0.89 -1.6 409,246 - AMB_RS01925 0.89 -0.1 409,246 - AMB_RS01925 0.89 -0.0 409,246 - AMB_RS01925 0.89 -1.1 409,246 - AMB_RS01925 0.89 +0.1 409,246 - AMB_RS01925 0.89 +0.4 409,316 + -0.5 409,317 - -3.2 409,317 - -0.8
Or see this region's nucleotide sequence