Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01910

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01905 and AMB_RS01910 are separated by 12 nucleotidesAMB_RS01910 and AMB_RS01915 are separated by 14 nucleotides AMB_RS01905: AMB_RS01905 - S49 family peptidase, at 405,716 to 406,948 _RS01905 AMB_RS01910: AMB_RS01910 - head decoration protein, at 406,961 to 407,350 _RS01910 AMB_RS01915: AMB_RS01915 - minor capsid protein E, at 407,365 to 408,387 _RS01915 Position (kb) 406 407 408Strain fitness (log2 ratio) -3 -2 -1 0 1at 405.962 kb on + strand, within AMB_RS01905at 405.963 kb on - strand, within AMB_RS01905at 405.963 kb on - strand, within AMB_RS01905at 406.155 kb on - strand, within AMB_RS01905at 406.155 kb on - strand, within AMB_RS01905at 406.155 kb on - strand, within AMB_RS01905at 406.184 kb on + strand, within AMB_RS01905at 406.184 kb on + strand, within AMB_RS01905at 406.184 kb on + strand, within AMB_RS01905at 406.184 kb on + strand, within AMB_RS01905at 406.184 kb on + strand, within AMB_RS01905at 406.184 kb on + strand, within AMB_RS01905at 406.185 kb on - strand, within AMB_RS01905at 406.185 kb on - strand, within AMB_RS01905at 406.376 kb on + strand, within AMB_RS01905at 406.376 kb on + strand, within AMB_RS01905at 406.377 kb on - strand, within AMB_RS01905at 406.455 kb on - strand, within AMB_RS01905at 406.455 kb on - strand, within AMB_RS01905at 406.455 kb on - strand, within AMB_RS01905at 406.455 kb on - strand, within AMB_RS01905at 406.686 kb on + strand, within AMB_RS01905at 406.687 kb on - strand, within AMB_RS01905at 406.687 kb on - strand, within AMB_RS01905at 406.709 kb on + strand, within AMB_RS01905at 406.710 kb on - strand, within AMB_RS01905at 406.946 kb on + strandat 406.946 kb on + strandat 406.946 kb on + strandat 406.946 kb on + strandat 406.946 kb on + strandat 406.947 kb on - strandat 406.947 kb on - strandat 407.024 kb on + strand, within AMB_RS01910at 407.024 kb on + strand, within AMB_RS01910at 407.024 kb on + strand, within AMB_RS01910at 407.025 kb on - strand, within AMB_RS01910at 407.449 kb on + strandat 407.449 kb on + strandat 407.449 kb on + strandat 407.449 kb on + strandat 407.449 kb on + strandat 407.450 kb on - strandat 407.450 kb on - strandat 407.450 kb on - strandat 407.450 kb on - strandat 407.450 kb on - strandat 407.450 kb on - strandat 407.451 kb on + strandat 407.451 kb on + strandat 407.452 kb on - strandat 407.452 kb on - strandat 407.452 kb on - strandat 407.821 kb on + strand, within AMB_RS01915at 407.822 kb on - strand, within AMB_RS01915at 407.822 kb on - strand, within AMB_RS01915at 407.828 kb on - strand, within AMB_RS01915at 407.939 kb on + strand, within AMB_RS01915at 407.940 kb on - strand, within AMB_RS01915at 407.940 kb on - strand, within AMB_RS01915at 407.940 kb on - strand, within AMB_RS01915at 408.028 kb on + strand, within AMB_RS01915at 408.028 kb on + strand, within AMB_RS01915at 408.028 kb on + strand, within AMB_RS01915at 408.029 kb on - strand, within AMB_RS01915at 408.034 kb on + strand, within AMB_RS01915at 408.034 kb on + strand, within AMB_RS01915at 408.034 kb on + strand, within AMB_RS01915at 408.037 kb on + strand, within AMB_RS01915at 408.037 kb on + strand, within AMB_RS01915at 408.115 kb on + strand, within AMB_RS01915at 408.116 kb on - strand, within AMB_RS01915at 408.116 kb on - strand, within AMB_RS01915at 408.116 kb on - strand, within AMB_RS01915at 408.217 kb on + strand, within AMB_RS01915at 408.217 kb on + strand, within AMB_RS01915at 408.217 kb on + strand, within AMB_RS01915at 408.271 kb on + strand, within AMB_RS01915at 408.271 kb on + strand, within AMB_RS01915at 408.271 kb on + strand, within AMB_RS01915at 408.272 kb on - strand, within AMB_RS01915at 408.272 kb on - strand, within AMB_RS01915at 408.272 kb on - strand, within AMB_RS01915at 408.272 kb on - strand, within AMB_RS01915at 408.272 kb on - strand, within AMB_RS01915

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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405,962 + AMB_RS01905 0.20 +0.1
405,963 - AMB_RS01905 0.20 -1.8
405,963 - AMB_RS01905 0.20 +0.5
406,155 - AMB_RS01905 0.36 -2.2
406,155 - AMB_RS01905 0.36 -1.0
406,155 - AMB_RS01905 0.36 +0.7
406,184 + AMB_RS01905 0.38 -0.5
406,184 + AMB_RS01905 0.38 -0.0
406,184 + AMB_RS01905 0.38 -1.6
406,184 + AMB_RS01905 0.38 -0.1
406,184 + AMB_RS01905 0.38 +0.9
406,184 + AMB_RS01905 0.38 -2.4
406,185 - AMB_RS01905 0.38 -1.3
406,185 - AMB_RS01905 0.38 -1.5
406,376 + AMB_RS01905 0.54 +0.1
406,376 + AMB_RS01905 0.54 +0.3
406,377 - AMB_RS01905 0.54 -1.1
406,455 - AMB_RS01905 0.60 +0.6
406,455 - AMB_RS01905 0.60 -0.3
406,455 - AMB_RS01905 0.60 -1.3
406,455 - AMB_RS01905 0.60 -1.5
406,686 + AMB_RS01905 0.79 -0.1
406,687 - AMB_RS01905 0.79 -2.6
406,687 - AMB_RS01905 0.79 -1.9
406,709 + AMB_RS01905 0.81 +0.5
406,710 - AMB_RS01905 0.81 +0.1
406,946 + -1.1
406,946 + -1.1
406,946 + -1.1
406,946 + -0.1
406,946 + -2.2
406,947 - -0.5
406,947 - +0.8
407,024 + AMB_RS01910 0.16 -1.1
407,024 + AMB_RS01910 0.16 -0.1
407,024 + AMB_RS01910 0.16 -2.4
407,025 - AMB_RS01910 0.16 +0.5
407,449 + +0.1
407,449 + -1.6
407,449 + -3.2
407,449 + +0.4
407,449 + +0.2
407,450 - +0.2
407,450 - -2.5
407,450 - -0.4
407,450 - -0.1
407,450 - -0.5
407,450 - -0.1
407,451 + -0.3
407,451 + -0.6
407,452 - -1.6
407,452 - +1.5
407,452 - -0.4
407,821 + AMB_RS01915 0.45 -1.0
407,822 - AMB_RS01915 0.45 +0.1
407,822 - AMB_RS01915 0.45 +0.2
407,828 - AMB_RS01915 0.45 -0.2
407,939 + AMB_RS01915 0.56 +0.5
407,940 - AMB_RS01915 0.56 +0.6
407,940 - AMB_RS01915 0.56 -0.5
407,940 - AMB_RS01915 0.56 -1.0
408,028 + AMB_RS01915 0.65 -0.3
408,028 + AMB_RS01915 0.65 +0.2
408,028 + AMB_RS01915 0.65 -2.5
408,029 - AMB_RS01915 0.65 -1.0
408,034 + AMB_RS01915 0.65 +0.5
408,034 + AMB_RS01915 0.65 -0.0
408,034 + AMB_RS01915 0.65 +0.1
408,037 + AMB_RS01915 0.66 -0.0
408,037 + AMB_RS01915 0.66 +0.5
408,115 + AMB_RS01915 0.73 -0.1
408,116 - AMB_RS01915 0.73 -2.9
408,116 - AMB_RS01915 0.73 -1.0
408,116 - AMB_RS01915 0.73 -0.8
408,217 + AMB_RS01915 0.83 -2.5
408,217 + AMB_RS01915 0.83 -0.0
408,217 + AMB_RS01915 0.83 -0.0
408,271 + AMB_RS01915 0.89 -0.8
408,271 + AMB_RS01915 0.89 -1.3
408,271 + AMB_RS01915 0.89 -0.4
408,272 - AMB_RS01915 0.89 -0.2
408,272 - AMB_RS01915 0.89 +0.3
408,272 - AMB_RS01915 0.89 -0.3
408,272 - AMB_RS01915 0.89 -0.5
408,272 - AMB_RS01915 0.89 -2.3

Or see this region's nucleotide sequence