Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01680 and AMB_RS01685 are separated by 4 nucleotides AMB_RS01685 and AMB_RS01690 overlap by 4 nucleotides AMB_RS01690 and AMB_RS01695 are separated by 148 nucleotides AMB_RS01695 and AMB_RS01700 are separated by 10 nucleotides AMB_RS01700 and AMB_RS01705 are separated by 24 nucleotides
AMB_RS01680: AMB_RS01680 - ABC transporter permease, at 371,104 to 371,919
_RS01680
AMB_RS01685: AMB_RS01685 - anti-sigma factor antagonist, at 371,924 to 372,250
_RS01685
AMB_RS01690: AMB_RS01690 - serine phosphatase, at 372,247 to 373,914
_RS01690
AMB_RS01695: AMB_RS01695 - hypothetical protein, at 374,063 to 374,281
_RS01695
AMB_RS01700: AMB_RS01700 - hypothetical protein, at 374,292 to 374,747
_RS01700
AMB_RS01705: AMB_RS01705 - alpha/beta hydrolase, at 374,772 to 375,566
_RS01705
Position (kb) 372
373
374 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.327 kb on + strand, within AMB_RS01680 at 371.328 kb on - strand, within AMB_RS01680 at 371.328 kb on - strand, within AMB_RS01680 at 371.328 kb on - strand, within AMB_RS01680 at 371.328 kb on - strand, within AMB_RS01680 at 371.363 kb on + strand, within AMB_RS01680 at 371.363 kb on + strand, within AMB_RS01680 at 371.363 kb on + strand, within AMB_RS01680 at 371.363 kb on + strand, within AMB_RS01680 at 371.364 kb on - strand, within AMB_RS01680 at 371.364 kb on - strand, within AMB_RS01680 at 371.364 kb on - strand, within AMB_RS01680 at 371.654 kb on + strand, within AMB_RS01680 at 371.654 kb on + strand, within AMB_RS01680 at 371.654 kb on + strand, within AMB_RS01680 at 371.654 kb on + strand, within AMB_RS01680 at 371.655 kb on - strand, within AMB_RS01680 at 371.655 kb on - strand, within AMB_RS01680 at 371.655 kb on - strand, within AMB_RS01680 at 371.802 kb on - strand, within AMB_RS01680 at 372.060 kb on + strand, within AMB_RS01685 at 372.099 kb on + strand, within AMB_RS01685 at 372.099 kb on + strand, within AMB_RS01685 at 372.099 kb on + strand, within AMB_RS01685 at 372.099 kb on + strand, within AMB_RS01685 at 372.100 kb on - strand, within AMB_RS01685 at 372.100 kb on - strand, within AMB_RS01685 at 372.100 kb on - strand, within AMB_RS01685 at 372.100 kb on - strand, within AMB_RS01685 at 372.337 kb on + strand at 372.338 kb on - strand at 372.338 kb on - strand at 372.396 kb on + strand at 372.397 kb on - strand at 372.426 kb on + strand, within AMB_RS01690 at 372.494 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.857 kb on + strand, within AMB_RS01690 at 372.858 kb on - strand, within AMB_RS01690 at 372.858 kb on - strand, within AMB_RS01690 at 373.960 kb on + strand at 373.967 kb on + strand at 373.967 kb on + strand at 373.968 kb on - strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.969 kb on + strand at 373.970 kb on - strand at 373.970 kb on - strand at 373.970 kb on - strand at 373.974 kb on - strand at 373.974 kb on - strand at 374.020 kb on + strand at 374.020 kb on + strand at 374.020 kb on + strand at 374.021 kb on - strand at 374.132 kb on + strand, within AMB_RS01695 at 374.133 kb on - strand, within AMB_RS01695 at 374.133 kb on - strand, within AMB_RS01695 at 374.347 kb on + strand, within AMB_RS01700 at 374.353 kb on + strand, within AMB_RS01700 at 374.354 kb on - strand, within AMB_RS01700 at 374.354 kb on - strand, within AMB_RS01700 at 374.512 kb on + strand, within AMB_RS01700 at 374.512 kb on + strand, within AMB_RS01700 at 374.512 kb on + strand, within AMB_RS01700 at 374.512 kb on + strand, within AMB_RS01700 at 374.513 kb on - strand, within AMB_RS01700 at 374.513 kb on - strand, within AMB_RS01700 at 374.513 kb on - strand, within AMB_RS01700 at 374.513 kb on - strand, within AMB_RS01700 at 374.674 kb on - strand, within AMB_RS01700 at 374.759 kb on + strand at 374.759 kb on + strand at 374.774 kb on - strand at 374.826 kb on + strand at 374.826 kb on + strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.827 kb on - strand at 374.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 371,327 + AMB_RS01680 0.27 -2.0 371,327 + AMB_RS01680 0.27 -1.5 371,327 + AMB_RS01680 0.27 -2.4 371,327 + AMB_RS01680 0.27 +0.7 371,327 + AMB_RS01680 0.27 -0.5 371,327 + AMB_RS01680 0.27 -0.3 371,327 + AMB_RS01680 0.27 -1.7 371,328 - AMB_RS01680 0.27 +1.0 371,328 - AMB_RS01680 0.27 -1.3 371,328 - AMB_RS01680 0.27 -0.3 371,328 - AMB_RS01680 0.27 +0.6 371,363 + AMB_RS01680 0.32 -0.5 371,363 + AMB_RS01680 0.32 -0.1 371,363 + AMB_RS01680 0.32 +0.4 371,363 + AMB_RS01680 0.32 -0.1 371,364 - AMB_RS01680 0.32 -1.5 371,364 - AMB_RS01680 0.32 -0.1 371,364 - AMB_RS01680 0.32 -0.1 371,654 + AMB_RS01680 0.67 -1.3 371,654 + AMB_RS01680 0.67 -0.8 371,654 + AMB_RS01680 0.67 -0.5 371,654 + AMB_RS01680 0.67 -1.1 371,655 - AMB_RS01680 0.68 -0.4 371,655 - AMB_RS01680 0.68 +0.5 371,655 - AMB_RS01680 0.68 +0.5 371,802 - AMB_RS01680 0.86 -0.8 372,060 + AMB_RS01685 0.42 -0.0 372,099 + AMB_RS01685 0.54 +0.1 372,099 + AMB_RS01685 0.54 -0.0 372,099 + AMB_RS01685 0.54 +0.2 372,099 + AMB_RS01685 0.54 -2.7 372,100 - AMB_RS01685 0.54 +0.5 372,100 - AMB_RS01685 0.54 -1.5 372,100 - AMB_RS01685 0.54 -0.2 372,100 - AMB_RS01685 0.54 -2.9 372,337 + -2.0 372,338 - -0.3 372,338 - -1.7 372,396 + -0.0 372,397 - -0.1 372,426 + AMB_RS01690 0.11 +0.2 372,494 + AMB_RS01690 0.15 +0.5 372,857 + AMB_RS01690 0.37 +0.3 372,857 + AMB_RS01690 0.37 +0.5 372,857 + AMB_RS01690 0.37 +0.1 372,857 + AMB_RS01690 0.37 +1.3 372,857 + AMB_RS01690 0.37 -1.7 372,858 - AMB_RS01690 0.37 -1.5 372,858 - AMB_RS01690 0.37 +0.0 373,960 + -1.5 373,967 + -1.4 373,967 + -0.5 373,968 - -0.8 373,969 + +0.4 373,969 + -0.1 373,969 + -1.1 373,969 + -0.0 373,969 + -1.0 373,969 + -2.1 373,970 - -1.7 373,970 - +0.1 373,970 - -1.7 373,974 - +0.4 373,974 - -1.8 374,020 + +0.2 374,020 + -0.3 374,020 + +0.6 374,021 - +0.5 374,132 + AMB_RS01695 0.32 -0.1 374,133 - AMB_RS01695 0.32 -0.8 374,133 - AMB_RS01695 0.32 -0.8 374,347 + AMB_RS01700 0.12 +0.8 374,353 + AMB_RS01700 0.13 -0.1 374,354 - AMB_RS01700 0.14 -1.7 374,354 - AMB_RS01700 0.14 +1.0 374,512 + AMB_RS01700 0.48 -0.5 374,512 + AMB_RS01700 0.48 -2.8 374,512 + AMB_RS01700 0.48 -0.9 374,512 + AMB_RS01700 0.48 -0.5 374,513 - AMB_RS01700 0.48 +0.8 374,513 - AMB_RS01700 0.48 -1.7 374,513 - AMB_RS01700 0.48 -0.2 374,513 - AMB_RS01700 0.48 -2.3 374,674 - AMB_RS01700 0.84 -3.8 374,759 + -0.5 374,759 + +0.1 374,774 - -0.0 374,826 + +0.7 374,826 + -0.8 374,827 - +0.8 374,827 - -0.6 374,827 - -3.3 374,827 - -0.0
Or see this region's nucleotide sequence