Experiment: 30_an_initial_3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS01630 and AMB_RS01635 are separated by 4 nucleotides AMB_RS01635 and AMB_RS01640 are separated by 24 nucleotides AMB_RS01640 and AMB_RS01645 are separated by 86 nucleotides
AMB_RS01630: AMB_RS01630 - methyltransferase domain-containing protein, at 360,889 to 361,725
_RS01630
AMB_RS01635: AMB_RS01635 - chemotaxis response regulator protein-glutamate methylesterase, at 361,730 to 362,875
_RS01635
AMB_RS01640: AMB_RS01640 - response regulator, at 362,900 to 363,265
_RS01640
AMB_RS01645: AMB_RS01645 - chemotaxis protein CheW, at 363,352 to 363,837
_RS01645
Position (kb) 361
362
363 Strain fitness (log2 ratio) -2
-1
0
1
2 at 360.753 kb on + strand at 360.890 kb on + strand at 360.890 kb on + strand at 360.891 kb on - strand at 360.891 kb on - strand at 360.891 kb on - strand at 360.891 kb on - strand at 360.891 kb on - strand at 360.932 kb on + strand at 361.004 kb on + strand, within AMB_RS01630 at 361.004 kb on + strand, within AMB_RS01630 at 361.005 kb on - strand, within AMB_RS01630 at 361.076 kb on + strand, within AMB_RS01630 at 361.076 kb on + strand, within AMB_RS01630 at 361.077 kb on - strand, within AMB_RS01630 at 361.077 kb on - strand, within AMB_RS01630 at 361.145 kb on + strand, within AMB_RS01630 at 361.215 kb on - strand, within AMB_RS01630 at 361.215 kb on - strand, within AMB_RS01630 at 361.377 kb on + strand, within AMB_RS01630 at 361.378 kb on - strand, within AMB_RS01630 at 361.379 kb on + strand, within AMB_RS01630 at 361.379 kb on + strand, within AMB_RS01630 at 361.380 kb on - strand, within AMB_RS01630 at 361.380 kb on - strand, within AMB_RS01630 at 361.380 kb on - strand, within AMB_RS01630 at 361.647 kb on - strand at 361.662 kb on + strand at 361.954 kb on - strand, within AMB_RS01635 at 362.089 kb on - strand, within AMB_RS01635 at 362.089 kb on - strand, within AMB_RS01635 at 362.089 kb on - strand, within AMB_RS01635 at 362.535 kb on + strand, within AMB_RS01635 at 362.535 kb on + strand, within AMB_RS01635 at 362.535 kb on + strand, within AMB_RS01635 at 362.536 kb on - strand, within AMB_RS01635 at 362.881 kb on + strand at 362.902 kb on - strand at 362.964 kb on + strand, within AMB_RS01640 at 362.964 kb on + strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.965 kb on - strand, within AMB_RS01640 at 362.984 kb on - strand, within AMB_RS01640 at 362.998 kb on + strand, within AMB_RS01640 at 362.998 kb on + strand, within AMB_RS01640 at 362.999 kb on - strand, within AMB_RS01640 at 363.338 kb on - strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.348 kb on + strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.349 kb on - strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.350 kb on + strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.351 kb on - strand at 363.353 kb on + strand at 363.409 kb on - strand, within AMB_RS01645 at 363.422 kb on + strand, within AMB_RS01645 at 363.422 kb on + strand, within AMB_RS01645 at 363.423 kb on - strand, within AMB_RS01645 at 363.471 kb on + strand, within AMB_RS01645 at 363.533 kb on + strand, within AMB_RS01645 at 363.534 kb on - strand, within AMB_RS01645 at 363.534 kb on - strand, within AMB_RS01645 at 363.826 kb on + strand at 363.827 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_3 remove 360,753 + -1.2 360,890 + -0.5 360,890 + +0.3 360,891 - -1.1 360,891 - -1.3 360,891 - -0.1 360,891 - -0.1 360,891 - -0.1 360,932 + -0.8 361,004 + AMB_RS01630 0.14 +1.5 361,004 + AMB_RS01630 0.14 -0.7 361,005 - AMB_RS01630 0.14 -2.5 361,076 + AMB_RS01630 0.22 +0.2 361,076 + AMB_RS01630 0.22 -1.6 361,077 - AMB_RS01630 0.22 +0.8 361,077 - AMB_RS01630 0.22 +0.3 361,145 + AMB_RS01630 0.31 +1.5 361,215 - AMB_RS01630 0.39 -1.1 361,215 - AMB_RS01630 0.39 -1.0 361,377 + AMB_RS01630 0.58 -0.5 361,378 - AMB_RS01630 0.58 -1.3 361,379 + AMB_RS01630 0.59 +0.0 361,379 + AMB_RS01630 0.59 -1.1 361,380 - AMB_RS01630 0.59 -0.4 361,380 - AMB_RS01630 0.59 -1.5 361,380 - AMB_RS01630 0.59 -0.3 361,647 - +1.0 361,662 + -1.3 361,954 - AMB_RS01635 0.20 -1.3 362,089 - AMB_RS01635 0.31 +0.1 362,089 - AMB_RS01635 0.31 +0.6 362,089 - AMB_RS01635 0.31 +0.6 362,535 + AMB_RS01635 0.70 +0.0 362,535 + AMB_RS01635 0.70 +0.0 362,535 + AMB_RS01635 0.70 +0.2 362,536 - AMB_RS01635 0.70 +0.1 362,881 + -0.8 362,902 - -2.6 362,964 + AMB_RS01640 0.17 +1.8 362,964 + AMB_RS01640 0.17 -1.3 362,965 - AMB_RS01640 0.18 +0.5 362,965 - AMB_RS01640 0.18 +2.5 362,965 - AMB_RS01640 0.18 -0.8 362,984 - AMB_RS01640 0.23 +2.7 362,998 + AMB_RS01640 0.27 +0.9 362,998 + AMB_RS01640 0.27 +1.4 362,999 - AMB_RS01640 0.27 +2.2 363,338 - -1.3 363,348 + -1.8 363,348 + -0.2 363,348 + -0.3 363,348 + -0.0 363,348 + -1.8 363,349 - -0.8 363,349 - +0.2 363,349 - -0.3 363,349 - -0.1 363,350 + +0.5 363,350 + -0.4 363,350 + -0.7 363,350 + -2.3 363,350 + -0.1 363,351 - -1.8 363,351 - +0.5 363,351 - -0.5 363,351 - +0.2 363,351 - +0.9 363,353 + -1.5 363,409 - AMB_RS01645 0.12 -1.0 363,422 + AMB_RS01645 0.14 -0.7 363,422 + AMB_RS01645 0.14 -0.8 363,423 - AMB_RS01645 0.15 +0.2 363,471 + AMB_RS01645 0.24 -0.0 363,533 + AMB_RS01645 0.37 -0.1 363,534 - AMB_RS01645 0.37 +0.7 363,534 - AMB_RS01645 0.37 -1.5 363,826 + +0.2 363,827 - -0.8
Or see this region's nucleotide sequence