Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01275

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01270 and AMB_RS01275 overlap by 4 nucleotidesAMB_RS01275 and AMB_RS01280 overlap by 4 nucleotidesAMB_RS01280 and AMB_RS01285 overlap by 11 nucleotides AMB_RS01270: AMB_RS01270 - 4-oxalomesaconate tautomerase, at 281,571 to 282,662 _RS01270 AMB_RS01275: AMB_RS01275 - amidohydrolase, at 282,659 to 283,687 _RS01275 AMB_RS01280: AMB_RS01280 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase, at 283,684 to 284,379 _RS01280 AMB_RS01285: AMB_RS01285 - dehydrogenase, at 284,369 to 285,307 _RS01285 Position (kb) 282 283 284Strain fitness (log2 ratio) -3 -2 -1 0 1at 281.948 kb on + strand, within AMB_RS01270at 281.949 kb on - strand, within AMB_RS01270at 281.955 kb on - strand, within AMB_RS01270at 282.000 kb on + strand, within AMB_RS01270at 282.000 kb on + strand, within AMB_RS01270at 282.000 kb on + strand, within AMB_RS01270at 282.001 kb on - strand, within AMB_RS01270at 282.001 kb on - strand, within AMB_RS01270at 282.001 kb on - strand, within AMB_RS01270at 282.086 kb on + strand, within AMB_RS01270at 282.087 kb on - strand, within AMB_RS01270at 282.087 kb on - strand, within AMB_RS01270at 282.169 kb on + strand, within AMB_RS01270at 282.170 kb on - strand, within AMB_RS01270at 282.170 kb on - strand, within AMB_RS01270at 282.170 kb on - strand, within AMB_RS01270at 282.170 kb on - strand, within AMB_RS01270at 282.315 kb on + strand, within AMB_RS01270at 282.315 kb on + strand, within AMB_RS01270at 282.315 kb on + strand, within AMB_RS01270at 282.315 kb on + strand, within AMB_RS01270at 282.683 kb on + strandat 282.683 kb on + strandat 282.683 kb on + strandat 282.684 kb on - strandat 282.684 kb on - strandat 282.684 kb on - strandat 283.061 kb on + strand, within AMB_RS01275at 283.061 kb on + strand, within AMB_RS01275at 283.061 kb on + strand, within AMB_RS01275at 283.061 kb on + strand, within AMB_RS01275at 283.061 kb on + strand, within AMB_RS01275at 283.062 kb on - strand, within AMB_RS01275at 283.062 kb on - strand, within AMB_RS01275at 283.062 kb on - strand, within AMB_RS01275at 283.151 kb on + strand, within AMB_RS01275at 283.151 kb on + strand, within AMB_RS01275at 283.152 kb on - strand, within AMB_RS01275at 283.152 kb on - strand, within AMB_RS01275at 283.152 kb on - strand, within AMB_RS01275at 283.169 kb on + strand, within AMB_RS01275at 283.169 kb on + strand, within AMB_RS01275at 283.238 kb on + strand, within AMB_RS01275at 283.238 kb on + strand, within AMB_RS01275at 283.239 kb on - strand, within AMB_RS01275at 283.239 kb on - strand, within AMB_RS01275at 283.346 kb on + strand, within AMB_RS01275at 283.346 kb on + strand, within AMB_RS01275at 283.432 kb on + strand, within AMB_RS01275at 283.442 kb on + strand, within AMB_RS01275at 283.553 kb on + strand, within AMB_RS01275at 283.553 kb on + strand, within AMB_RS01275at 283.554 kb on - strand, within AMB_RS01275at 283.556 kb on + strand, within AMB_RS01275at 283.556 kb on + strand, within AMB_RS01275at 283.556 kb on + strand, within AMB_RS01275at 283.556 kb on + strand, within AMB_RS01275at 283.574 kb on + strand, within AMB_RS01275at 283.574 kb on + strand, within AMB_RS01275at 283.575 kb on - strand, within AMB_RS01275at 283.575 kb on - strand, within AMB_RS01275at 283.575 kb on - strand, within AMB_RS01275at 283.575 kb on - strand, within AMB_RS01275at 283.622 kb on + strandat 283.622 kb on + strandat 283.622 kb on + strandat 283.646 kb on + strandat 283.646 kb on + strandat 283.821 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.822 kb on + strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.823 kb on - strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.824 kb on + strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.825 kb on - strand, within AMB_RS01280at 283.837 kb on + strand, within AMB_RS01280at 283.837 kb on + strand, within AMB_RS01280at 283.837 kb on + strand, within AMB_RS01280at 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on + strandat 284.329 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.330 kb on - strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.368 kb on + strandat 284.369 kb on - strandat 284.369 kb on - strandat 284.369 kb on - strandat 284.377 kb on + strandat 284.483 kb on + strand, within AMB_RS01285at 284.483 kb on + strand, within AMB_RS01285at 284.483 kb on + strand, within AMB_RS01285at 284.483 kb on + strand, within AMB_RS01285

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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281,948 + AMB_RS01270 0.35 +0.3
281,949 - AMB_RS01270 0.35 -1.0
281,955 - AMB_RS01270 0.35 -0.5
282,000 + AMB_RS01270 0.39 -2.6
282,000 + AMB_RS01270 0.39 +0.4
282,000 + AMB_RS01270 0.39 +0.6
282,001 - AMB_RS01270 0.39 +0.1
282,001 - AMB_RS01270 0.39 -1.0
282,001 - AMB_RS01270 0.39 -0.4
282,086 + AMB_RS01270 0.47 -0.4
282,087 - AMB_RS01270 0.47 -1.6
282,087 - AMB_RS01270 0.47 -0.4
282,169 + AMB_RS01270 0.55 -1.4
282,170 - AMB_RS01270 0.55 -1.5
282,170 - AMB_RS01270 0.55 +0.0
282,170 - AMB_RS01270 0.55 -0.4
282,170 - AMB_RS01270 0.55 -0.7
282,315 + AMB_RS01270 0.68 -0.4
282,315 + AMB_RS01270 0.68 +0.1
282,315 + AMB_RS01270 0.68 +0.0
282,315 + AMB_RS01270 0.68 -0.0
282,683 + -0.8
282,683 + +0.4
282,683 + +0.1
282,684 - -1.0
282,684 - -0.2
282,684 - -0.7
283,061 + AMB_RS01275 0.39 +0.5
283,061 + AMB_RS01275 0.39 -1.0
283,061 + AMB_RS01275 0.39 -1.4
283,061 + AMB_RS01275 0.39 -1.2
283,061 + AMB_RS01275 0.39 -2.1
283,062 - AMB_RS01275 0.39 +1.6
283,062 - AMB_RS01275 0.39 +0.0
283,062 - AMB_RS01275 0.39 -1.6
283,151 + AMB_RS01275 0.48 -0.3
283,151 + AMB_RS01275 0.48 +0.0
283,152 - AMB_RS01275 0.48 -0.2
283,152 - AMB_RS01275 0.48 -0.3
283,152 - AMB_RS01275 0.48 -1.9
283,169 + AMB_RS01275 0.50 +1.6
283,169 + AMB_RS01275 0.50 -0.7
283,238 + AMB_RS01275 0.56 +0.5
283,238 + AMB_RS01275 0.56 -0.3
283,239 - AMB_RS01275 0.56 +0.1
283,239 - AMB_RS01275 0.56 -1.2
283,346 + AMB_RS01275 0.67 -1.2
283,346 + AMB_RS01275 0.67 +0.8
283,432 + AMB_RS01275 0.75 -0.7
283,442 + AMB_RS01275 0.76 -0.7
283,553 + AMB_RS01275 0.87 -0.1
283,553 + AMB_RS01275 0.87 +0.6
283,554 - AMB_RS01275 0.87 -0.0
283,556 + AMB_RS01275 0.87 -1.6
283,556 + AMB_RS01275 0.87 +0.3
283,556 + AMB_RS01275 0.87 -2.1
283,556 + AMB_RS01275 0.87 +0.3
283,574 + AMB_RS01275 0.89 +0.6
283,574 + AMB_RS01275 0.89 +0.5
283,575 - AMB_RS01275 0.89 -1.0
283,575 - AMB_RS01275 0.89 -1.2
283,575 - AMB_RS01275 0.89 +0.4
283,575 - AMB_RS01275 0.89 +0.1
283,622 + +0.3
283,622 + -2.4
283,622 + +0.6
283,646 + +0.2
283,646 + +0.6
283,821 + AMB_RS01280 0.20 -1.4
283,822 + AMB_RS01280 0.20 -3.2
283,822 + AMB_RS01280 0.20 +0.3
283,822 + AMB_RS01280 0.20 +0.4
283,822 + AMB_RS01280 0.20 +0.4
283,822 + AMB_RS01280 0.20 +0.2
283,822 + AMB_RS01280 0.20 -0.4
283,822 + AMB_RS01280 0.20 +0.2
283,823 - AMB_RS01280 0.20 -1.4
283,823 - AMB_RS01280 0.20 +0.0
283,823 - AMB_RS01280 0.20 -0.2
283,823 - AMB_RS01280 0.20 -1.0
283,823 - AMB_RS01280 0.20 +0.5
283,823 - AMB_RS01280 0.20 -1.4
283,823 - AMB_RS01280 0.20 +0.2
283,824 + AMB_RS01280 0.20 -0.7
283,824 + AMB_RS01280 0.20 -1.6
283,824 + AMB_RS01280 0.20 -0.4
283,824 + AMB_RS01280 0.20 -0.0
283,824 + AMB_RS01280 0.20 -0.4
283,824 + AMB_RS01280 0.20 +0.1
283,824 + AMB_RS01280 0.20 +0.2
283,824 + AMB_RS01280 0.20 +0.3
283,824 + AMB_RS01280 0.20 -0.0
283,824 + AMB_RS01280 0.20 +1.0
283,824 + AMB_RS01280 0.20 -1.2
283,824 + AMB_RS01280 0.20 +0.2
283,824 + AMB_RS01280 0.20 -1.0
283,825 - AMB_RS01280 0.20 +0.3
283,825 - AMB_RS01280 0.20 +0.4
283,825 - AMB_RS01280 0.20 +0.3
283,825 - AMB_RS01280 0.20 +0.3
283,825 - AMB_RS01280 0.20 -1.0
283,837 + AMB_RS01280 0.22 -1.0
283,837 + AMB_RS01280 0.22 -1.0
283,837 + AMB_RS01280 0.22 +0.3
284,329 + -1.7
284,329 + -0.6
284,329 + -0.4
284,329 + -0.0
284,329 + +0.0
284,329 + +0.0
284,329 + -1.0
284,329 + -0.4
284,329 + +0.1
284,329 + -0.1
284,329 + +0.7
284,329 + +0.6
284,329 + -0.2
284,329 + -0.2
284,329 + +0.1
284,329 + +0.6
284,329 + -0.6
284,329 + +1.0
284,329 - +0.2
284,330 - -0.7
284,330 - -0.2
284,330 - -1.6
284,330 - +0.6
284,330 - +0.3
284,330 - +0.6
284,368 + -2.0
284,368 + -1.4
284,368 + -1.7
284,368 + +0.4
284,368 + -0.3
284,368 + -0.7
284,368 + +0.5
284,368 + +0.5
284,368 + -0.8
284,368 + +0.1
284,369 - +0.1
284,369 - -1.0
284,369 - -0.7
284,377 + -0.2
284,483 + AMB_RS01285 0.12 -0.7
284,483 + AMB_RS01285 0.12 -1.2
284,483 + AMB_RS01285 0.12 +0.1
284,483 + AMB_RS01285 0.12 +0.2

Or see this region's nucleotide sequence