Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01205

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01195 and AMB_RS01200 are separated by 106 nucleotidesAMB_RS01200 and AMB_RS01205 are separated by 3 nucleotidesAMB_RS01205 and AMB_RS01210 are separated by 17 nucleotidesAMB_RS01210 and AMB_RS01215 are separated by 147 nucleotides AMB_RS01195: AMB_RS01195 - DUF4237 domain-containing protein, at 266,343 to 266,819 _RS01195 AMB_RS01200: AMB_RS01200 - DUF4237 domain-containing protein, at 266,926 to 267,396 _RS01200 AMB_RS01205: AMB_RS01205 - nucleoside deaminase, at 267,400 to 267,828 _RS01205 AMB_RS01210: AMB_RS01210 - FCD domain-containing protein, at 267,846 to 268,622 _RS01210 AMB_RS01215: AMB_RS01215 - pyruvate carboxylase, at 268,770 to 272,234 _RS01215 Position (kb) 267 268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 266.628 kb on + strand, within AMB_RS01195at 266.629 kb on - strand, within AMB_RS01195at 266.629 kb on - strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.649 kb on + strand, within AMB_RS01195at 266.650 kb on + strand, within AMB_RS01195at 266.651 kb on + strand, within AMB_RS01195at 266.651 kb on + strand, within AMB_RS01195at 266.652 kb on - strand, within AMB_RS01195at 266.658 kb on + strand, within AMB_RS01195at 266.741 kb on + strand, within AMB_RS01195at 266.741 kb on + strand, within AMB_RS01195at 267.054 kb on + strand, within AMB_RS01200at 267.054 kb on + strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.055 kb on - strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.157 kb on + strand, within AMB_RS01200at 267.158 kb on - strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.202 kb on + strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.203 kb on - strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.223 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.226 kb on + strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.227 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 267.233 kb on - strand, within AMB_RS01200at 268.079 kb on - strand, within AMB_RS01210at 268.639 kb on - strandat 268.652 kb on - strandat 268.672 kb on + strandat 268.673 kb on - strandat 268.694 kb on + strandat 268.713 kb on + strandat 268.714 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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266,628 + AMB_RS01195 0.60 +0.0
266,629 - AMB_RS01195 0.60 -0.4
266,629 - AMB_RS01195 0.60 -0.7
266,649 + AMB_RS01195 0.64 +0.0
266,649 + AMB_RS01195 0.64 -0.4
266,649 + AMB_RS01195 0.64 -1.4
266,650 + AMB_RS01195 0.64 +0.0
266,651 + AMB_RS01195 0.65 -0.5
266,651 + AMB_RS01195 0.65 -1.0
266,652 - AMB_RS01195 0.65 -1.7
266,658 + AMB_RS01195 0.66 -1.6
266,741 + AMB_RS01195 0.83 -2.1
266,741 + AMB_RS01195 0.83 -0.4
267,054 + AMB_RS01200 0.27 +0.0
267,054 + AMB_RS01200 0.27 -2.9
267,055 - AMB_RS01200 0.27 +0.2
267,055 - AMB_RS01200 0.27 -0.7
267,055 - AMB_RS01200 0.27 -0.7
267,055 - AMB_RS01200 0.27 +1.6
267,157 + AMB_RS01200 0.49 -0.4
267,157 + AMB_RS01200 0.49 +0.0
267,157 + AMB_RS01200 0.49 -2.0
267,157 + AMB_RS01200 0.49 +3.2
267,157 + AMB_RS01200 0.49 +0.6
267,158 - AMB_RS01200 0.49 -0.5
267,202 + AMB_RS01200 0.59 -2.1
267,202 + AMB_RS01200 0.59 -1.4
267,202 + AMB_RS01200 0.59 -2.5
267,202 + AMB_RS01200 0.59 -2.0
267,202 + AMB_RS01200 0.59 -1.2
267,202 + AMB_RS01200 0.59 -1.2
267,203 - AMB_RS01200 0.59 +0.2
267,203 - AMB_RS01200 0.59 -0.7
267,203 - AMB_RS01200 0.59 -0.4
267,203 - AMB_RS01200 0.59 +0.2
267,203 - AMB_RS01200 0.59 -0.4
267,203 - AMB_RS01200 0.59 +0.5
267,223 + AMB_RS01200 0.63 +0.6
267,223 + AMB_RS01200 0.63 +0.8
267,223 + AMB_RS01200 0.63 +0.2
267,226 + AMB_RS01200 0.64 +0.4
267,226 + AMB_RS01200 0.64 +0.6
267,226 + AMB_RS01200 0.64 +0.4
267,226 + AMB_RS01200 0.64 -0.7
267,226 + AMB_RS01200 0.64 -1.4
267,226 + AMB_RS01200 0.64 +0.6
267,227 - AMB_RS01200 0.64 -1.0
267,227 - AMB_RS01200 0.64 -0.4
267,227 - AMB_RS01200 0.64 +1.6
267,227 - AMB_RS01200 0.64 +0.6
267,233 - AMB_RS01200 0.65 -1.4
267,233 - AMB_RS01200 0.65 +0.2
267,233 - AMB_RS01200 0.65 -0.1
267,233 - AMB_RS01200 0.65 -0.2
268,079 - AMB_RS01210 0.30 +0.6
268,639 - -0.3
268,652 - +0.6
268,672 + -1.9
268,673 - -0.8
268,694 + +0.0
268,713 + +1.5
268,714 - +0.0

Or see this region's nucleotide sequence