Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS01155

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS01145 and AMB_RS01150 are separated by 48 nucleotidesAMB_RS01150 and AMB_RS01155 are separated by 13 nucleotidesAMB_RS01155 and AMB_RS01160 overlap by 14 nucleotides AMB_RS01145: AMB_RS01145 - dioxygenase, at 256,208 to 256,975 _RS01145 AMB_RS01150: AMB_RS01150 - hemerythrin, at 257,024 to 257,431 _RS01150 AMB_RS01155: AMB_RS01155 - hypothetical protein, at 257,445 to 257,831 _RS01155 AMB_RS01160: AMB_RS01160 - glycosyltransferase, at 257,818 to 258,912 _RS01160 Position (kb) 257 258Strain fitness (log2 ratio) -3 -2 -1 0 1at 256.622 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.622 kb on + strand, within AMB_RS01145at 256.623 kb on - strand, within AMB_RS01145at 256.623 kb on - strand, within AMB_RS01145at 256.623 kb on - strand, within AMB_RS01145at 256.697 kb on - strand, within AMB_RS01145at 256.710 kb on - strand, within AMB_RS01145at 256.710 kb on - strand, within AMB_RS01145at 256.710 kb on - strand, within AMB_RS01145at 256.710 kb on - strand, within AMB_RS01145at 256.815 kb on - strand, within AMB_RS01145at 256.961 kb on + strandat 256.962 kb on - strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.991 kb on + strandat 256.992 kb on - strandat 256.992 kb on - strandat 256.992 kb on - strandat 256.992 kb on - strandat 256.992 kb on - strandat 257.007 kb on + strandat 257.007 kb on + strandat 257.008 kb on - strandat 257.030 kb on + strandat 257.030 kb on + strandat 257.031 kb on - strandat 257.031 kb on - strandat 257.180 kb on + strand, within AMB_RS01150at 257.180 kb on + strand, within AMB_RS01150at 257.573 kb on + strand, within AMB_RS01155at 257.573 kb on + strand, within AMB_RS01155at 257.574 kb on - strand, within AMB_RS01155at 257.574 kb on - strand, within AMB_RS01155at 257.669 kb on + strand, within AMB_RS01155at 257.669 kb on + strand, within AMB_RS01155at 257.670 kb on - strand, within AMB_RS01155at 257.731 kb on - strand, within AMB_RS01155at 257.756 kb on - strand, within AMB_RS01155at 257.829 kb on + strandat 257.829 kb on + strandat 257.829 kb on + strandat 257.830 kb on - strandat 257.833 kb on - strandat 257.859 kb on - strandat 257.918 kb on + strandat 257.919 kb on - strandat 257.990 kb on + strand, within AMB_RS01160at 258.044 kb on + strand, within AMB_RS01160at 258.044 kb on + strand, within AMB_RS01160at 258.044 kb on + strand, within AMB_RS01160at 258.045 kb on - strand, within AMB_RS01160at 258.194 kb on + strand, within AMB_RS01160at 258.194 kb on + strand, within AMB_RS01160at 258.195 kb on - strand, within AMB_RS01160at 258.276 kb on + strand, within AMB_RS01160at 258.359 kb on + strand, within AMB_RS01160at 258.359 kb on + strand, within AMB_RS01160at 258.359 kb on + strand, within AMB_RS01160at 258.360 kb on - strand, within AMB_RS01160at 258.360 kb on - strand, within AMB_RS01160at 258.435 kb on - strand, within AMB_RS01160

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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256,622 + AMB_RS01145 0.54 -0.1
256,622 + AMB_RS01145 0.54 -1.0
256,622 + AMB_RS01145 0.54 -0.4
256,622 + AMB_RS01145 0.54 -3.1
256,622 + AMB_RS01145 0.54 -2.0
256,623 - AMB_RS01145 0.54 -2.1
256,623 - AMB_RS01145 0.54 +0.6
256,623 - AMB_RS01145 0.54 -2.1
256,697 - AMB_RS01145 0.64 -0.1
256,710 - AMB_RS01145 0.65 -2.6
256,710 - AMB_RS01145 0.65 +0.1
256,710 - AMB_RS01145 0.65 +0.5
256,710 - AMB_RS01145 0.65 +0.1
256,815 - AMB_RS01145 0.79 +0.6
256,961 + +0.0
256,962 - -0.1
256,991 + -1.2
256,991 + -1.6
256,991 + -0.4
256,991 + +0.0
256,992 - +1.6
256,992 - -0.7
256,992 - -0.7
256,992 - -3.0
256,992 - -0.1
257,007 + +0.0
257,007 + +0.2
257,008 - +0.2
257,030 + -0.1
257,030 + -2.1
257,031 - -1.6
257,031 - +0.2
257,180 + AMB_RS01150 0.38 +1.6
257,180 + AMB_RS01150 0.38 -0.1
257,573 + AMB_RS01155 0.33 -0.4
257,573 + AMB_RS01155 0.33 +0.6
257,574 - AMB_RS01155 0.33 -0.7
257,574 - AMB_RS01155 0.33 +0.2
257,669 + AMB_RS01155 0.58 +0.3
257,669 + AMB_RS01155 0.58 +0.3
257,670 - AMB_RS01155 0.58 +0.9
257,731 - AMB_RS01155 0.74 -1.4
257,756 - AMB_RS01155 0.80 -0.2
257,829 + -0.7
257,829 + +0.7
257,829 + +0.7
257,830 - -1.9
257,833 - +0.0
257,859 - -2.1
257,918 + -0.6
257,919 - -0.3
257,990 + AMB_RS01160 0.16 -1.0
258,044 + AMB_RS01160 0.21 +0.7
258,044 + AMB_RS01160 0.21 -1.6
258,044 + AMB_RS01160 0.21 -2.7
258,045 - AMB_RS01160 0.21 -1.6
258,194 + AMB_RS01160 0.34 +0.5
258,194 + AMB_RS01160 0.34 +0.6
258,195 - AMB_RS01160 0.34 -0.7
258,276 + AMB_RS01160 0.42 -1.2
258,359 + AMB_RS01160 0.49 +0.8
258,359 + AMB_RS01160 0.49 -1.4
258,359 + AMB_RS01160 0.49 -2.1
258,360 - AMB_RS01160 0.49 +0.0
258,360 - AMB_RS01160 0.49 -0.7
258,435 - AMB_RS01160 0.56 -2.8

Or see this region's nucleotide sequence