Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00890

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00885 and AMB_RS00890 are separated by 5 nucleotidesAMB_RS00890 and AMB_RS00895 are separated by 52 nucleotides AMB_RS00885: AMB_RS00885 - 2,3-epoxybenzoyl-CoA dihydrolase, at 199,634 to 201,286 _RS00885 AMB_RS00890: AMB_RS00890 - benzoyl-CoA 2,3-epoxidase subunit BoxB, at 201,292 to 202,713 _RS00890 AMB_RS00895: AMB_RS00895 - benzoyl-CoA 2,3-epoxidase subunit BoxA, at 202,766 to 203,947 _RS00895 Position (kb) 201 202 203Strain fitness (log2 ratio) -2 -1 0 1 2at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.400 kb on - strand, within AMB_RS00885at 200.446 kb on + strand, within AMB_RS00885at 200.446 kb on + strand, within AMB_RS00885at 200.446 kb on + strand, within AMB_RS00885at 200.519 kb on + strand, within AMB_RS00885at 200.636 kb on + strand, within AMB_RS00885at 200.697 kb on - strand, within AMB_RS00885at 200.697 kb on - strand, within AMB_RS00885at 200.697 kb on - strand, within AMB_RS00885at 201.242 kb on + strandat 201.267 kb on - strandat 201.284 kb on + strandat 201.284 kb on + strandat 201.307 kb on + strandat 201.307 kb on + strandat 201.308 kb on - strandat 201.388 kb on + strandat 201.388 kb on + strandat 201.388 kb on + strandat 201.388 kb on + strandat 201.389 kb on - strandat 201.389 kb on - strandat 201.390 kb on + strandat 201.390 kb on + strandat 201.390 kb on + strandat 201.391 kb on - strandat 201.391 kb on - strandat 201.442 kb on + strand, within AMB_RS00890at 201.442 kb on + strand, within AMB_RS00890at 201.442 kb on + strand, within AMB_RS00890at 201.442 kb on + strand, within AMB_RS00890at 201.443 kb on - strand, within AMB_RS00890at 201.443 kb on - strand, within AMB_RS00890at 201.443 kb on - strand, within AMB_RS00890at 201.443 kb on - strand, within AMB_RS00890at 201.511 kb on + strand, within AMB_RS00890at 201.610 kb on + strand, within AMB_RS00890at 201.710 kb on - strand, within AMB_RS00890at 201.710 kb on - strand, within AMB_RS00890at 201.772 kb on + strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.943 kb on + strand, within AMB_RS00890at 201.944 kb on - strand, within AMB_RS00890at 202.183 kb on + strand, within AMB_RS00890at 202.219 kb on + strand, within AMB_RS00890at 202.219 kb on + strand, within AMB_RS00890at 202.220 kb on - strand, within AMB_RS00890at 202.220 kb on - strand, within AMB_RS00890at 202.291 kb on + strand, within AMB_RS00890at 202.291 kb on + strand, within AMB_RS00890at 202.291 kb on + strand, within AMB_RS00890at 202.292 kb on - strand, within AMB_RS00890at 202.292 kb on - strand, within AMB_RS00890at 202.591 kb on + strandat 202.591 kb on + strandat 202.592 kb on - strandat 202.592 kb on - strandat 202.592 kb on - strandat 202.674 kb on + strandat 202.697 kb on - strandat 202.697 kb on - strandat 202.712 kb on - strandat 202.712 kb on - strandat 202.712 kb on - strandat 202.871 kb on + strandat 202.871 kb on + strandat 202.871 kb on + strandat 202.871 kb on + strandat 202.872 kb on - strandat 202.872 kb on - strandat 202.872 kb on - strandat 202.872 kb on - strandat 202.872 kb on - strandat 202.883 kb on + strandat 202.883 kb on + strandat 203.135 kb on + strand, within AMB_RS00895at 203.136 kb on - strand, within AMB_RS00895at 203.147 kb on + strand, within AMB_RS00895at 203.147 kb on + strand, within AMB_RS00895at 203.189 kb on - strand, within AMB_RS00895at 203.189 kb on - strand, within AMB_RS00895at 203.189 kb on - strand, within AMB_RS00895at 203.339 kb on + strand, within AMB_RS00895at 203.340 kb on - strand, within AMB_RS00895at 203.340 kb on - strand, within AMB_RS00895at 203.340 kb on - strand, within AMB_RS00895at 203.432 kb on + strand, within AMB_RS00895at 203.432 kb on + strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.433 kb on - strand, within AMB_RS00895at 203.654 kb on + strand, within AMB_RS00895

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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200,399 + AMB_RS00885 0.46 +0.5
200,399 + AMB_RS00885 0.46 +1.6
200,399 + AMB_RS00885 0.46 +0.9
200,399 + AMB_RS00885 0.46 +0.7
200,399 + AMB_RS00885 0.46 +1.6
200,400 - AMB_RS00885 0.46 +0.4
200,446 + AMB_RS00885 0.49 -1.2
200,446 + AMB_RS00885 0.49 +0.4
200,446 + AMB_RS00885 0.49 -0.7
200,519 + AMB_RS00885 0.54 -0.7
200,636 + AMB_RS00885 0.61 +1.3
200,697 - AMB_RS00885 0.64 -0.4
200,697 - AMB_RS00885 0.64 -0.0
200,697 - AMB_RS00885 0.64 +0.2
201,242 + -1.0
201,267 - -0.7
201,284 + +1.3
201,284 + +0.6
201,307 + -1.0
201,307 + -1.2
201,308 - -0.5
201,388 + -1.0
201,388 + -1.4
201,388 + -0.4
201,388 + +0.0
201,389 - +0.1
201,389 - +0.2
201,390 + -0.4
201,390 + +0.4
201,390 + +0.6
201,391 - -1.6
201,391 - -1.2
201,442 + AMB_RS00890 0.11 +0.2
201,442 + AMB_RS00890 0.11 +0.0
201,442 + AMB_RS00890 0.11 -1.0
201,442 + AMB_RS00890 0.11 +0.5
201,443 - AMB_RS00890 0.11 -0.0
201,443 - AMB_RS00890 0.11 -1.6
201,443 - AMB_RS00890 0.11 -0.0
201,443 - AMB_RS00890 0.11 +0.7
201,511 + AMB_RS00890 0.15 +0.5
201,610 + AMB_RS00890 0.22 +1.2
201,710 - AMB_RS00890 0.29 -1.4
201,710 - AMB_RS00890 0.29 -0.2
201,772 + AMB_RS00890 0.34 -0.0
201,773 - AMB_RS00890 0.34 -1.6
201,773 - AMB_RS00890 0.34 -0.1
201,773 - AMB_RS00890 0.34 -1.4
201,943 + AMB_RS00890 0.46 -1.1
201,944 - AMB_RS00890 0.46 -1.7
202,183 + AMB_RS00890 0.63 -0.3
202,219 + AMB_RS00890 0.65 +1.9
202,219 + AMB_RS00890 0.65 +1.9
202,220 - AMB_RS00890 0.65 -0.0
202,220 - AMB_RS00890 0.65 -2.7
202,291 + AMB_RS00890 0.70 +1.1
202,291 + AMB_RS00890 0.70 -0.7
202,291 + AMB_RS00890 0.70 +0.7
202,292 - AMB_RS00890 0.70 +0.2
202,292 - AMB_RS00890 0.70 +0.0
202,591 + +0.6
202,591 + +2.2
202,592 - -1.2
202,592 - +1.7
202,592 - +0.1
202,674 + +2.0
202,697 - +0.2
202,697 - -0.7
202,712 - -0.4
202,712 - +0.2
202,712 - +0.5
202,871 + +2.1
202,871 + +1.1
202,871 + -2.1
202,871 + -0.5
202,872 - +0.2
202,872 - -1.4
202,872 - +0.6
202,872 - -1.7
202,872 - +0.0
202,883 + +0.6
202,883 + -0.2
203,135 + AMB_RS00895 0.31 +0.2
203,136 - AMB_RS00895 0.31 -0.2
203,147 + AMB_RS00895 0.32 -1.6
203,147 + AMB_RS00895 0.32 -1.2
203,189 - AMB_RS00895 0.36 -1.6
203,189 - AMB_RS00895 0.36 -1.4
203,189 - AMB_RS00895 0.36 -0.2
203,339 + AMB_RS00895 0.48 +0.2
203,340 - AMB_RS00895 0.49 -1.0
203,340 - AMB_RS00895 0.49 -1.2
203,340 - AMB_RS00895 0.49 -2.0
203,432 + AMB_RS00895 0.56 +0.0
203,432 + AMB_RS00895 0.56 +0.6
203,433 - AMB_RS00895 0.56 -1.4
203,433 - AMB_RS00895 0.56 -1.0
203,433 - AMB_RS00895 0.56 -0.8
203,654 + AMB_RS00895 0.75 -0.4

Or see this region's nucleotide sequence