Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00885

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00880 and AMB_RS00885 are separated by 203 nucleotidesAMB_RS00885 and AMB_RS00890 are separated by 5 nucleotides AMB_RS00880: AMB_RS00880 - 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase, at 197,883 to 199,430 _RS00880 AMB_RS00885: AMB_RS00885 - 2,3-epoxybenzoyl-CoA dihydrolase, at 199,634 to 201,286 _RS00885 AMB_RS00890: AMB_RS00890 - benzoyl-CoA 2,3-epoxidase subunit BoxB, at 201,292 to 202,713 _RS00890 Position (kb) 199 200 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 199.090 kb on - strand, within AMB_RS00880at 199.351 kb on - strandat 199.428 kb on + strandat 199.595 kb on + strandat 199.664 kb on + strandat 199.666 kb on - strandat 199.769 kb on + strandat 199.770 kb on - strandat 199.770 kb on - strandat 199.770 kb on - strandat 199.796 kb on + strandat 199.796 kb on + strandat 199.892 kb on - strand, within AMB_RS00885at 199.892 kb on - strand, within AMB_RS00885at 199.930 kb on + strand, within AMB_RS00885at 199.930 kb on + strand, within AMB_RS00885at 199.930 kb on + strand, within AMB_RS00885at 199.930 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.000 kb on + strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.001 kb on - strand, within AMB_RS00885at 200.063 kb on + strand, within AMB_RS00885at 200.063 kb on + strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.064 kb on - strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.208 kb on + strand, within AMB_RS00885at 200.209 kb on - strand, within AMB_RS00885at 200.209 kb on - strand, within AMB_RS00885at 200.209 kb on - strand, within AMB_RS00885at 200.264 kb on - strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.399 kb on + strand, within AMB_RS00885at 200.400 kb on - strand, within AMB_RS00885at 200.446 kb on + strand, within AMB_RS00885at 200.446 kb on + strand, within AMB_RS00885at 200.446 kb on + strand, within AMB_RS00885at 200.519 kb on + strand, within AMB_RS00885at 200.636 kb on + strand, within AMB_RS00885at 200.697 kb on - strand, within AMB_RS00885at 200.697 kb on - strand, within AMB_RS00885at 200.697 kb on - strand, within AMB_RS00885at 201.242 kb on + strandat 201.267 kb on - strandat 201.284 kb on + strandat 201.284 kb on + strandat 201.307 kb on + strandat 201.307 kb on + strandat 201.308 kb on - strandat 201.388 kb on + strandat 201.388 kb on + strandat 201.388 kb on + strandat 201.388 kb on + strandat 201.389 kb on - strandat 201.389 kb on - strandat 201.390 kb on + strandat 201.390 kb on + strandat 201.390 kb on + strandat 201.391 kb on - strandat 201.391 kb on - strandat 201.442 kb on + strand, within AMB_RS00890at 201.442 kb on + strand, within AMB_RS00890at 201.442 kb on + strand, within AMB_RS00890at 201.442 kb on + strand, within AMB_RS00890at 201.443 kb on - strand, within AMB_RS00890at 201.443 kb on - strand, within AMB_RS00890at 201.443 kb on - strand, within AMB_RS00890at 201.443 kb on - strand, within AMB_RS00890at 201.511 kb on + strand, within AMB_RS00890at 201.610 kb on + strand, within AMB_RS00890at 201.710 kb on - strand, within AMB_RS00890at 201.710 kb on - strand, within AMB_RS00890at 201.772 kb on + strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.773 kb on - strand, within AMB_RS00890at 201.943 kb on + strand, within AMB_RS00890at 201.944 kb on - strand, within AMB_RS00890at 202.183 kb on + strand, within AMB_RS00890at 202.219 kb on + strand, within AMB_RS00890at 202.219 kb on + strand, within AMB_RS00890at 202.220 kb on - strand, within AMB_RS00890at 202.220 kb on - strand, within AMB_RS00890

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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199,090 - AMB_RS00880 0.78 -1.4
199,351 - -2.0
199,428 + +1.1
199,595 + +0.0
199,664 + +2.1
199,666 - +0.1
199,769 + +0.6
199,770 - -0.1
199,770 - +0.5
199,770 - -2.9
199,796 + +1.2
199,796 + -1.0
199,892 - AMB_RS00885 0.16 +0.3
199,892 - AMB_RS00885 0.16 -0.0
199,930 + AMB_RS00885 0.18 -1.0
199,930 + AMB_RS00885 0.18 -0.4
199,930 + AMB_RS00885 0.18 +0.0
199,930 + AMB_RS00885 0.18 +0.0
200,000 + AMB_RS00885 0.22 +0.0
200,000 + AMB_RS00885 0.22 +0.5
200,000 + AMB_RS00885 0.22 +0.8
200,000 + AMB_RS00885 0.22 +0.7
200,000 + AMB_RS00885 0.22 +0.4
200,001 - AMB_RS00885 0.22 -0.1
200,001 - AMB_RS00885 0.22 -2.0
200,001 - AMB_RS00885 0.22 +0.1
200,001 - AMB_RS00885 0.22 +0.0
200,001 - AMB_RS00885 0.22 +0.4
200,063 + AMB_RS00885 0.26 -1.0
200,063 + AMB_RS00885 0.26 +1.1
200,064 - AMB_RS00885 0.26 -1.0
200,064 - AMB_RS00885 0.26 -0.7
200,064 - AMB_RS00885 0.26 +2.2
200,064 - AMB_RS00885 0.26 -1.6
200,064 - AMB_RS00885 0.26 +0.2
200,208 + AMB_RS00885 0.35 +0.1
200,208 + AMB_RS00885 0.35 +0.1
200,208 + AMB_RS00885 0.35 -0.0
200,208 + AMB_RS00885 0.35 -1.0
200,208 + AMB_RS00885 0.35 -1.6
200,209 - AMB_RS00885 0.35 -0.2
200,209 - AMB_RS00885 0.35 +0.4
200,209 - AMB_RS00885 0.35 +0.6
200,264 - AMB_RS00885 0.38 -1.4
200,399 + AMB_RS00885 0.46 +0.5
200,399 + AMB_RS00885 0.46 +1.6
200,399 + AMB_RS00885 0.46 +0.9
200,399 + AMB_RS00885 0.46 +0.7
200,399 + AMB_RS00885 0.46 +1.6
200,400 - AMB_RS00885 0.46 +0.4
200,446 + AMB_RS00885 0.49 -1.2
200,446 + AMB_RS00885 0.49 +0.4
200,446 + AMB_RS00885 0.49 -0.7
200,519 + AMB_RS00885 0.54 -0.7
200,636 + AMB_RS00885 0.61 +1.3
200,697 - AMB_RS00885 0.64 -0.4
200,697 - AMB_RS00885 0.64 -0.0
200,697 - AMB_RS00885 0.64 +0.2
201,242 + -1.0
201,267 - -0.7
201,284 + +1.3
201,284 + +0.6
201,307 + -1.0
201,307 + -1.2
201,308 - -0.5
201,388 + -1.0
201,388 + -1.4
201,388 + -0.4
201,388 + +0.0
201,389 - +0.1
201,389 - +0.2
201,390 + -0.4
201,390 + +0.4
201,390 + +0.6
201,391 - -1.6
201,391 - -1.2
201,442 + AMB_RS00890 0.11 +0.2
201,442 + AMB_RS00890 0.11 +0.0
201,442 + AMB_RS00890 0.11 -1.0
201,442 + AMB_RS00890 0.11 +0.5
201,443 - AMB_RS00890 0.11 -0.0
201,443 - AMB_RS00890 0.11 -1.6
201,443 - AMB_RS00890 0.11 -0.0
201,443 - AMB_RS00890 0.11 +0.7
201,511 + AMB_RS00890 0.15 +0.5
201,610 + AMB_RS00890 0.22 +1.2
201,710 - AMB_RS00890 0.29 -1.4
201,710 - AMB_RS00890 0.29 -0.2
201,772 + AMB_RS00890 0.34 -0.0
201,773 - AMB_RS00890 0.34 -1.6
201,773 - AMB_RS00890 0.34 -0.1
201,773 - AMB_RS00890 0.34 -1.4
201,943 + AMB_RS00890 0.46 -1.1
201,944 - AMB_RS00890 0.46 -1.7
202,183 + AMB_RS00890 0.63 -0.3
202,219 + AMB_RS00890 0.65 +1.9
202,219 + AMB_RS00890 0.65 +1.9
202,220 - AMB_RS00890 0.65 -0.0
202,220 - AMB_RS00890 0.65 -2.7

Or see this region's nucleotide sequence