Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS00830

Experiment: 30_an_initial_3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS00820 and AMB_RS00825 are separated by 36 nucleotidesAMB_RS00825 and AMB_RS00830 overlap by 1 nucleotidesAMB_RS00830 and AMB_RS00835 overlap by 4 nucleotidesAMB_RS00835 and AMB_RS00840 are separated by 173 nucleotides AMB_RS00820: AMB_RS00820 - GDP-L-fucose synthase, at 184,747 to 185,691 _RS00820 AMB_RS00825: AMB_RS00825 - NAD(+) kinase, at 185,728 to 186,495 _RS00825 AMB_RS00830: AMB_RS00830 - ammonia monooxygenase, at 186,495 to 187,541 _RS00830 AMB_RS00835: AMB_RS00835 - cupin fold metalloprotein, WbuC family, at 187,538 to 188,020 _RS00835 AMB_RS00840: AMB_RS00840 - DUF992 domain-containing protein, at 188,194 to 188,670 _RS00840 Position (kb) 186 187 188Strain fitness (log2 ratio) -3 -2 -1 0 1at 185.668 kb on + strandat 185.668 kb on + strandat 185.669 kb on - strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strandat 185.689 kb on + strandat 186.798 kb on + strand, within AMB_RS00830at 186.798 kb on + strand, within AMB_RS00830at 186.798 kb on + strand, within AMB_RS00830at 186.798 kb on + strand, within AMB_RS00830at 186.799 kb on - strand, within AMB_RS00830at 186.803 kb on - strand, within AMB_RS00830at 186.908 kb on + strand, within AMB_RS00830at 186.908 kb on + strand, within AMB_RS00830at 186.908 kb on + strand, within AMB_RS00830at 186.908 kb on + strand, within AMB_RS00830at 186.909 kb on - strand, within AMB_RS00830at 187.313 kb on - strand, within AMB_RS00830at 187.612 kb on + strand, within AMB_RS00835at 187.612 kb on + strand, within AMB_RS00835at 187.613 kb on - strand, within AMB_RS00835at 187.679 kb on + strand, within AMB_RS00835at 187.679 kb on + strand, within AMB_RS00835at 187.679 kb on + strand, within AMB_RS00835at 187.679 kb on + strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.680 kb on - strand, within AMB_RS00835at 187.682 kb on - strand, within AMB_RS00835at 187.954 kb on + strand, within AMB_RS00835at 188.019 kb on - strandat 188.058 kb on + strandat 188.058 kb on + strandat 188.058 kb on + strandat 188.059 kb on - strandat 188.059 kb on - strandat 188.059 kb on - strandat 188.098 kb on + strandat 188.099 kb on - strandat 188.105 kb on + strandat 188.106 kb on - strandat 188.106 kb on - strandat 188.106 kb on - strandat 188.106 kb on - strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.181 kb on + strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.182 kb on - strandat 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.323 kb on + strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.324 kb on - strand, within AMB_RS00840at 188.359 kb on + strand, within AMB_RS00840at 188.359 kb on + strand, within AMB_RS00840at 188.360 kb on - strand, within AMB_RS00840at 188.360 kb on - strand, within AMB_RS00840at 188.360 kb on - strand, within AMB_RS00840at 188.360 kb on - strand, within AMB_RS00840at 188.387 kb on - strand, within AMB_RS00840at 188.387 kb on - strand, within AMB_RS00840at 188.387 kb on - strand, within AMB_RS00840at 188.387 kb on - strand, within AMB_RS00840at 188.452 kb on + strand, within AMB_RS00840at 188.452 kb on + strand, within AMB_RS00840at 188.453 kb on - strand, within AMB_RS00840at 188.453 kb on - strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.503 kb on + strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840at 188.504 kb on - strand, within AMB_RS00840

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_3
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185,668 + +0.8
185,668 + -2.7
185,669 - -2.1
185,689 + -0.7
185,689 + -0.4
185,689 + +0.0
185,689 + -0.4
185,689 + -0.1
186,798 + AMB_RS00830 0.29 -1.9
186,798 + AMB_RS00830 0.29 -0.7
186,798 + AMB_RS00830 0.29 -1.3
186,798 + AMB_RS00830 0.29 -1.4
186,799 - AMB_RS00830 0.29 -0.2
186,803 - AMB_RS00830 0.29 +0.0
186,908 + AMB_RS00830 0.39 +0.0
186,908 + AMB_RS00830 0.39 +0.8
186,908 + AMB_RS00830 0.39 -0.4
186,908 + AMB_RS00830 0.39 +0.7
186,909 - AMB_RS00830 0.40 +0.4
187,313 - AMB_RS00830 0.78 +0.3
187,612 + AMB_RS00835 0.15 -1.0
187,612 + AMB_RS00835 0.15 -0.4
187,613 - AMB_RS00835 0.16 -1.6
187,679 + AMB_RS00835 0.29 -1.4
187,679 + AMB_RS00835 0.29 -0.9
187,679 + AMB_RS00835 0.29 +1.6
187,679 + AMB_RS00835 0.29 -1.4
187,680 - AMB_RS00835 0.29 -1.0
187,680 - AMB_RS00835 0.29 -0.2
187,680 - AMB_RS00835 0.29 +0.0
187,680 - AMB_RS00835 0.29 -0.3
187,680 - AMB_RS00835 0.29 +0.1
187,680 - AMB_RS00835 0.29 -1.4
187,680 - AMB_RS00835 0.29 +0.0
187,682 - AMB_RS00835 0.30 +0.2
187,954 + AMB_RS00835 0.86 +0.0
188,019 - +0.0
188,058 + -1.0
188,058 + -0.4
188,058 + +0.1
188,059 - +0.5
188,059 - +0.0
188,059 - +0.1
188,098 + -0.4
188,099 - -1.7
188,105 + -0.1
188,106 - -2.8
188,106 - -0.0
188,106 - +0.6
188,106 - +0.9
188,181 + -0.4
188,181 + -1.2
188,181 + -0.1
188,181 + -0.6
188,181 + -0.7
188,181 + +0.3
188,182 - -0.6
188,182 - -2.2
188,182 - -2.2
188,182 - +0.8
188,182 - -0.4
188,182 - -0.7
188,182 - -0.5
188,323 + AMB_RS00840 0.27 +0.0
188,323 + AMB_RS00840 0.27 +0.0
188,323 + AMB_RS00840 0.27 +0.6
188,323 + AMB_RS00840 0.27 +0.2
188,323 + AMB_RS00840 0.27 -1.6
188,323 + AMB_RS00840 0.27 +0.4
188,323 + AMB_RS00840 0.27 -2.9
188,323 + AMB_RS00840 0.27 -1.1
188,323 + AMB_RS00840 0.27 -0.3
188,324 - AMB_RS00840 0.27 -1.7
188,324 - AMB_RS00840 0.27 +0.3
188,324 - AMB_RS00840 0.27 -0.2
188,324 - AMB_RS00840 0.27 +0.6
188,324 - AMB_RS00840 0.27 +0.3
188,324 - AMB_RS00840 0.27 -0.1
188,359 + AMB_RS00840 0.35 -0.7
188,359 + AMB_RS00840 0.35 -1.0
188,360 - AMB_RS00840 0.35 -0.9
188,360 - AMB_RS00840 0.35 +0.2
188,360 - AMB_RS00840 0.35 +0.3
188,360 - AMB_RS00840 0.35 -2.0
188,387 - AMB_RS00840 0.40 -0.3
188,387 - AMB_RS00840 0.40 +0.1
188,387 - AMB_RS00840 0.40 -0.7
188,387 - AMB_RS00840 0.40 -0.1
188,452 + AMB_RS00840 0.54 -1.4
188,452 + AMB_RS00840 0.54 -0.7
188,453 - AMB_RS00840 0.54 +0.1
188,453 - AMB_RS00840 0.54 -0.7
188,503 + AMB_RS00840 0.65 -0.7
188,503 + AMB_RS00840 0.65 -0.7
188,503 + AMB_RS00840 0.65 +0.3
188,503 + AMB_RS00840 0.65 -0.1
188,503 + AMB_RS00840 0.65 -0.7
188,504 - AMB_RS00840 0.65 -0.4
188,504 - AMB_RS00840 0.65 -0.1
188,504 - AMB_RS00840 0.65 +0.6
188,504 - AMB_RS00840 0.65 -1.4
188,504 - AMB_RS00840 0.65 +0.4
188,504 - AMB_RS00840 0.65 -1.2
188,504 - AMB_RS00840 0.65 +0.5

Or see this region's nucleotide sequence