Strain Fitness in Escherichia coli BW25113 around b2813
Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | benzoic 0.58 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,943,138 | - | +1.1 | |||
2,943,208 | + | ygdL | b2812 | 0.19 | +0.5 |
2,943,208 | + | ygdL | b2812 | 0.19 | +0.5 |
2,943,240 | - | ygdL | b2812 | 0.23 | -0.4 |
2,943,453 | + | ygdL | b2812 | 0.49 | +0.3 |
2,943,473 | - | ygdL | b2812 | 0.51 | -0.6 |
2,943,478 | - | ygdL | b2812 | 0.52 | +0.5 |
2,943,509 | + | ygdL | b2812 | 0.56 | -0.2 |
2,943,509 | + | ygdL | b2812 | 0.56 | +0.3 |
2,943,517 | - | ygdL | b2812 | 0.57 | -1.3 |
2,943,517 | - | ygdL | b2812 | 0.57 | -1.2 |
2,943,517 | - | ygdL | b2812 | 0.57 | +0.3 |
2,943,532 | - | ygdL | b2812 | 0.59 | +1.1 |
2,943,563 | - | ygdL | b2812 | 0.63 | +2.3 |
2,943,580 | - | ygdL | b2812 | 0.65 | +0.8 |
2,943,580 | - | ygdL | b2812 | 0.65 | +1.8 |
2,943,636 | - | ygdL | b2812 | 0.72 | +0.0 |
2,943,754 | - | ygdL | b2812 | 0.86 | -0.9 |
2,943,756 | + | ygdL | b2812 | 0.86 | +0.1 |
2,943,756 | + | ygdL | b2812 | 0.86 | +0.8 |
2,943,769 | - | ygdL | b2812 | 0.88 | +1.8 |
2,943,805 | + | +0.4 | |||
2,943,890 | + | +0.0 | |||
2,943,890 | + | -0.5 | |||
2,943,904 | - | -0.6 | |||
2,943,904 | - | +0.8 | |||
2,943,910 | - | -0.2 | |||
2,943,910 | - | +0.6 | |||
2,944,009 | + | +0.9 | |||
2,944,012 | + | +0.2 | |||
2,944,064 | - | -0.5 | |||
2,944,064 | - | +0.0 | |||
2,944,076 | - | +1.0 | |||
2,944,076 | - | -0.5 | |||
2,944,155 | + | +0.7 | |||
2,944,155 | + | +0.8 | |||
2,944,335 | + | mltA | b2813 | 0.21 | +0.8 |
2,944,335 | + | mltA | b2813 | 0.21 | +1.4 |
2,944,338 | - | mltA | b2813 | 0.21 | +0.2 |
2,944,340 | - | mltA | b2813 | 0.22 | -0.4 |
2,944,357 | + | mltA | b2813 | 0.23 | -1.0 |
2,944,357 | + | mltA | b2813 | 0.23 | +1.4 |
2,944,366 | - | mltA | b2813 | 0.24 | +1.0 |
2,944,366 | - | mltA | b2813 | 0.24 | +0.8 |
2,944,372 | - | mltA | b2813 | 0.24 | +0.2 |
2,944,372 | - | mltA | b2813 | 0.24 | -0.6 |
2,944,433 | + | mltA | b2813 | 0.30 | +0.9 |
2,944,433 | + | mltA | b2813 | 0.30 | -1.5 |
2,944,455 | + | mltA | b2813 | 0.32 | +0.3 |
2,944,485 | - | mltA | b2813 | 0.35 | +0.6 |
2,944,485 | - | mltA | b2813 | 0.35 | +0.4 |
2,944,553 | + | mltA | b2813 | 0.41 | -0.2 |
2,944,553 | + | mltA | b2813 | 0.41 | +1.8 |
2,944,561 | - | mltA | b2813 | 0.42 | +0.5 |
2,944,564 | + | mltA | b2813 | 0.42 | -0.7 |
2,944,566 | - | mltA | b2813 | 0.42 | -0.1 |
2,944,569 | + | mltA | b2813 | 0.42 | -0.5 |
2,944,652 | + | mltA | b2813 | 0.50 | +0.2 |
2,944,736 | - | mltA | b2813 | 0.58 | +0.4 |
2,944,860 | + | mltA | b2813 | 0.69 | -0.6 |
2,944,860 | + | mltA | b2813 | 0.69 | -1.7 |
2,944,883 | - | mltA | b2813 | 0.71 | +0.5 |
2,944,883 | - | mltA | b2813 | 0.71 | -0.4 |
2,944,943 | + | mltA | b2813 | 0.77 | -0.2 |
2,944,943 | + | mltA | b2813 | 0.77 | -0.4 |
2,944,943 | + | mltA | b2813 | 0.77 | -0.6 |
2,945,034 | + | mltA | b2813 | 0.85 | -0.3 |
2,945,034 | + | mltA | b2813 | 0.85 | -0.4 |
2,945,094 | - | -0.1 | |||
2,945,105 | + | +0.8 | |||
2,945,105 | + | +1.8 | |||
2,945,124 | + | +0.1 | |||
2,945,184 | + | +0.1 | |||
2,945,272 | + | +0.0 | |||
2,945,423 | + | metZ | b2814 | 0.18 | +0.2 |
2,945,508 | - | +0.1 | |||
2,946,029 | + | b2817 | b2817 | 0.20 | +1.0 |
2,946,029 | + | b2817 | b2817 | 0.20 | +0.4 |
2,946,068 | - | b2817 | b2817 | 0.23 | +0.1 |
2,946,068 | - | b2817 | b2817 | 0.23 | -1.0 |
2,946,086 | + | b2817 | b2817 | 0.24 | -0.8 |
2,946,094 | + | b2817 | b2817 | 0.25 | +0.8 |
2,946,164 | + | b2817 | b2817 | 0.31 | +1.4 |
2,946,172 | - | b2817 | b2817 | 0.31 | +0.2 |
Or see this region's nucleotide sequence