Strain Fitness in Escherichia coli BW25113 around b2091
Experiment: benzoic 0.58 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | benzoic 0.58 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,169,429 | + | -0.3 | |||
2,169,661 | - | +0.1 | |||
2,169,661 | - | +0.2 | |||
2,169,691 | + | -0.1 | |||
2,169,769 | - | +0.7 | |||
2,169,798 | + | +0.0 | |||
2,169,836 | + | +0.6 | |||
2,169,836 | + | -0.5 | |||
2,169,839 | - | -1.7 | |||
2,169,839 | - | +0.3 | |||
2,169,996 | + | gatD | b2091 | 0.13 | +1.6 |
2,170,033 | - | gatD | b2091 | 0.17 | -1.4 |
2,170,231 | - | gatD | b2091 | 0.36 | -1.4 |
2,170,231 | - | gatD | b2091 | 0.36 | -0.8 |
2,170,265 | + | gatD | b2091 | 0.39 | -0.2 |
2,170,272 | - | gatD | b2091 | 0.40 | +0.3 |
2,170,273 | - | gatD | b2091 | 0.40 | -0.3 |
2,170,273 | - | gatD | b2091 | 0.40 | +1.4 |
2,170,342 | - | gatD | b2091 | 0.47 | -1.4 |
2,170,342 | - | gatD | b2091 | 0.47 | +0.3 |
2,170,361 | + | gatD | b2091 | 0.48 | +0.6 |
2,170,361 | + | gatD | b2091 | 0.48 | -1.7 |
2,170,364 | - | gatD | b2091 | 0.49 | -0.0 |
2,170,379 | + | gatD | b2091 | 0.50 | +0.1 |
2,170,379 | + | gatD | b2091 | 0.50 | +1.0 |
2,170,379 | - | gatD | b2091 | 0.50 | +0.2 |
2,170,379 | - | gatD | b2091 | 0.50 | +0.8 |
2,170,432 | - | gatD | b2091 | 0.55 | +0.8 |
2,170,452 | - | gatD | b2091 | 0.57 | -1.6 |
2,170,624 | - | gatD | b2091 | 0.74 | -1.2 |
2,170,624 | - | gatD | b2091 | 0.74 | +0.6 |
2,170,665 | - | gatD | b2091 | 0.78 | -1.7 |
2,170,668 | + | gatD | b2091 | 0.78 | +0.2 |
2,170,676 | - | gatD | b2091 | 0.79 | +0.1 |
2,170,676 | - | -0.7 | |||
2,170,689 | + | gatD | b2091 | 0.80 | +0.3 |
2,170,707 | - | gatD | b2091 | 0.82 | -1.7 |
2,170,710 | - | gatD | b2091 | 0.82 | +0.0 |
2,170,710 | - | gatD | b2091 | 0.82 | +1.0 |
2,170,792 | - | gatD | b2091 | 0.90 | +0.4 |
2,170,793 | - | gatD | b2091 | 0.90 | +0.3 |
2,170,793 | - | gatD | b2091 | 0.90 | +0.2 |
2,170,810 | + | -0.6 | |||
2,170,810 | + | +0.5 | |||
2,170,868 | - | +1.3 | |||
2,170,873 | + | -0.0 | |||
2,170,873 | - | +0.9 | |||
2,170,912 | + | -0.1 | |||
2,170,912 | + | +0.6 | |||
2,171,087 | - | gatC | b2092 | 0.10 | -1.0 |
2,171,226 | + | gatC | b2092 | 0.21 | -0.8 |
2,171,404 | - | gatC | b2092 | 0.34 | +0.6 |
2,171,562 | + | gatC | b2092 | 0.46 | -0.8 |
2,171,566 | + | gatC | b2092 | 0.46 | +0.3 |
2,171,583 | - | gatC | b2092 | 0.47 | -1.7 |
2,171,732 | - | gatC | b2092 | 0.58 | +0.4 |
2,171,762 | - | gatC | b2092 | 0.60 | +0.6 |
2,171,762 | - | gatC | b2092 | 0.60 | -0.4 |
2,171,771 | - | gatC | b2092 | 0.61 | -0.5 |
2,171,771 | - | gatC | b2092 | 0.61 | +0.0 |
2,171,871 | + | gatC | b2092 | 0.68 | +0.6 |
2,171,871 | + | gatC | b2092 | 0.68 | +0.1 |
2,171,879 | - | gatC | b2092 | 0.69 | -0.4 |
2,171,879 | - | gatC | b2092 | 0.69 | -0.6 |
Or see this region's nucleotide sequence