Strain Fitness in Pseudomonas sp. RS175 around PFR28_05262

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
6,019,717	-		PFR28_05261	0.10	+0.8
6,019,776	+		PFR28_05261	0.16	+0.9
6,019,776	+		PFR28_05261	0.16	+0.6
6,019,792	-		PFR28_05261	0.18	-1.7
6,019,800	+		PFR28_05261	0.19	+0.1
6,019,801	-		PFR28_05261	0.19	+2.1
6,019,801	-		PFR28_05261	0.19	-0.1
6,019,801	-		PFR28_05261	0.19	+0.5
6,019,965	+		PFR28_05261	0.37	-1.6
6,019,965	+		PFR28_05261	0.37	+0.4
6,019,965	+		PFR28_05261	0.37	+0.5
6,019,966	-		PFR28_05261	0.37	-0.3
6,019,966	-		PFR28_05261	0.37	-1.0
6,019,992	+		PFR28_05261	0.40	-1.8
6,019,993	-		PFR28_05261	0.40	+0.8
6,019,993	-		PFR28_05261	0.40	+1.0
6,020,025	+		PFR28_05261	0.43	-1.6
6,020,025	+		PFR28_05261	0.43	-0.1
6,020,025	+		PFR28_05261	0.43	-3.3
6,020,026	-		PFR28_05261	0.44	-1.0
6,020,060	+		PFR28_05261	0.47	-1.1
6,020,088	-		PFR28_05261	0.50	+2.0
6,020,135	+		PFR28_05261	0.55	-0.6
6,020,135	+		PFR28_05261	0.55	-0.2
6,020,135	+		PFR28_05261	0.55	+0.1
6,020,135	+		PFR28_05261	0.55	-1.2
6,020,135	+		PFR28_05261	0.55	-0.2
6,020,136	-		PFR28_05261	0.55	+0.1
6,020,136	-		PFR28_05261	0.55	+0.2
6,020,136	-		PFR28_05261	0.55	-0.6
6,020,292	-		PFR28_05261	0.72	-2.4
6,020,310	+		PFR28_05261	0.74	-2.5
6,020,310	+		PFR28_05261	0.74	+0.1
6,020,310	+		PFR28_05261	0.74	+0.4
6,020,310	+		PFR28_05261	0.74	-0.9
6,020,311	-		PFR28_05261	0.74	+1.1
6,020,311	-		PFR28_05261	0.74	-1.8
6,020,311	-		PFR28_05261	0.74	-0.0
6,020,425	+		PFR28_05261	0.87	+0.3
6,020,468	+				-0.4
6,020,469	-				+1.3
6,020,469	-				+0.7
6,020,469	-				-0.1
6,020,545	+				+0.6
6,020,613	+				-0.2
6,020,614	-				-0.0
6,020,646	+				-0.6
6,020,646	+				+0.0
6,020,646	+				+0.4
6,020,737	+				-0.2
6,020,737	+				+2.2
6,020,827	+		PFR28_05262	0.12	-0.9
6,020,827	+		PFR28_05262	0.12	+0.2
6,020,827	+		PFR28_05262	0.12	-0.4
6,020,827	+		PFR28_05262	0.12	+1.3
6,020,827	+		PFR28_05262	0.12	-0.1
6,020,921	-		PFR28_05262	0.19	+0.5
6,020,938	+		PFR28_05262	0.20	-0.2
6,021,059	+		PFR28_05262	0.29	+0.6
6,021,059	+		PFR28_05262	0.29	+0.2
6,021,060	-		PFR28_05262	0.29	+0.3
6,021,068	-		PFR28_05262	0.30	-1.7
6,021,124	+		PFR28_05262	0.34	+0.5
6,021,125	-		PFR28_05262	0.34	-1.3
6,021,222	+		PFR28_05262	0.41	+1.3
6,021,223	-		PFR28_05262	0.41	+0.8
6,021,245	-		PFR28_05262	0.43	+0.6
6,021,429	+		PFR28_05262	0.56	-1.3
6,021,430	-		PFR28_05262	0.56	+0.4
6,021,441	-		PFR28_05262	0.57	-2.9
6,021,454	-		PFR28_05262	0.58	+1.5
6,021,495	+		PFR28_05262	0.61	+0.1
6,021,495	+		PFR28_05262	0.61	-0.4
6,021,495	+		PFR28_05262	0.61	+0.5
6,021,495	+		PFR28_05262	0.61	+0.8
6,021,495	+		PFR28_05262	0.61	-1.8
6,021,496	-		PFR28_05262	0.61	+1.3
6,021,496	-		PFR28_05262	0.61	-0.4
6,021,496	-		PFR28_05262	0.61	+0.0
6,021,496	-		PFR28_05262	0.61	-0.6
6,021,496	-		PFR28_05262	0.61	-2.6
6,021,496	-		PFR28_05262	0.61	+1.0
6,021,589	+		PFR28_05262	0.68	-0.2
6,021,590	-		PFR28_05262	0.68	-1.5
6,021,590	-		PFR28_05262	0.68	-0.9
6,021,590	-		PFR28_05262	0.68	+0.3
6,021,646	+		PFR28_05262	0.72	-0.2
6,021,646	+		PFR28_05262	0.72	+0.0
6,021,646	+		PFR28_05262	0.72	+0.5
6,021,647	-		PFR28_05262	0.73	-0.5
6,021,648	+		PFR28_05262	0.73	-0.0
6,021,648	+		PFR28_05262	0.73	-0.9
6,021,648	+		PFR28_05262	0.73	+0.8
6,021,648	+		PFR28_05262	0.73	-0.5
6,021,649	-		PFR28_05262	0.73	+0.0
6,021,649	-		PFR28_05262	0.73	+1.0
6,021,649	-		PFR28_05262	0.73	-1.7
6,021,649	-		PFR28_05262	0.73	+0.7
6,021,649	-		PFR28_05262	0.73	-0.2
6,021,649	-		PFR28_05262	0.73	+0.4
6,021,649	-		PFR28_05262	0.73	+0.3
6,021,652	+		PFR28_05262	0.73	-1.1
6,021,652	+		PFR28_05262	0.73	+0.6
6,021,652	+		PFR28_05262	0.73	-1.5
6,021,653	-		PFR28_05262	0.73	-0.9
6,021,653	-		PFR28_05262	0.73	-1.2
6,021,653	-		PFR28_05262	0.73	-0.1
6,021,860	+		PFR28_05262	0.88	-1.3
6,021,860	+		PFR28_05262	0.88	-1.5
6,021,861	-		PFR28_05262	0.88	+1.3
6,021,861	-		PFR28_05262	0.88	+0.3
6,021,861	-		PFR28_05262	0.88	+0.2
6,021,861	-		PFR28_05262	0.88	-0.6
6,021,904	+				+1.5
6,021,904	+				-1.5
6,021,904	+				+0.1
6,021,904	+				+0.2
6,021,904	+				-0.5
6,021,905	-				+0.0
6,021,905	-				-0.9
6,021,905	-				-0.0
6,021,905	-				+1.0
6,021,905	-				+0.5
6,021,977	+				-0.7
6,021,977	+				+0.6
6,021,978	-				+0.7
6,021,978	-				-0.7
6,022,031	-				-0.2
6,022,031	-				-0.2
6,022,031	-				-0.1
6,022,031	-				-0.7
6,022,032	+				-0.0
6,022,032	+				+0.3
6,022,032	+				-0.9
6,022,032	+				-0.4
6,022,033	-				-1.9
6,022,033	-				+0.7
6,022,033	-				-1.5
6,022,033	-				+0.6
6,022,072	+				-2.0
6,022,154	+				-2.7
6,022,154	+				+0.5
6,022,154	+				-1.2
6,022,154	+				+0.5
6,022,154	+				-0.5
6,022,154	+				+0.3
6,022,154	+				-0.2
6,022,154	+				-2.6
6,022,154	+				+0.8
6,022,155	-				-0.3
6,022,155	-				+1.1
6,022,155	-				+1.7
6,022,155	-				+0.5
6,022,155	-				+0.3
6,022,155	-				+0.1
6,022,155	-				-0.1
6,022,155	-				-1.1
6,022,155	-				+0.7
6,022,155	-				+1.3
6,022,155	-				-1.5
6,022,155	-				-0.6
6,022,155	-				+0.8
6,022,185	+				-0.5
6,022,185	+				-0.6
6,022,186	-				+0.9
6,022,454	-		PFR28_05263	0.24	-0.6
6,022,454	-		PFR28_05263	0.24	-1.4
6,022,466	+		PFR28_05263	0.25	-1.1
6,022,466	+		PFR28_05263	0.25	-2.1
6,022,466	+		PFR28_05263	0.25	+0.5
6,022,564	+		PFR28_05263	0.32	-1.3
6,022,565	-		PFR28_05263	0.32	+0.0
6,022,565	-		PFR28_05263	0.32	+0.4
6,022,679	+		PFR28_05263	0.39	+1.2
6,022,679	+		PFR28_05263	0.39	+0.1
6,022,679	+		PFR28_05263	0.39	-0.8
6,022,679	+		PFR28_05263	0.39	-0.8
6,022,680	-		PFR28_05263	0.39	+0.1
6,022,780	+		PFR28_05263	0.46	-1.1
6,022,780	+		PFR28_05263	0.46	-0.3
6,022,780	+		PFR28_05263	0.46	+0.8
6,022,780	+		PFR28_05263	0.46	+0.7
6,022,780	+		PFR28_05263	0.46	+0.7
6,022,780	+		PFR28_05263	0.46	-1.8
6,022,780	+		PFR28_05263	0.46	-3.3
6,022,780	+		PFR28_05263	0.46	-0.1
6,022,780	+		PFR28_05263	0.46	+0.4
6,022,780	+		PFR28_05263	0.46	+0.2
6,022,781	-		PFR28_05263	0.46	-0.4
6,022,781	-		PFR28_05263	0.46	-0.3
6,022,781	-		PFR28_05263	0.46	-0.5
6,022,781	-		PFR28_05263	0.46	-0.5
6,022,781	-		PFR28_05263	0.46	-3.1
6,022,781	-		PFR28_05263	0.46	-0.9
6,022,781	-		PFR28_05263	0.46	+0.7
6,022,781	-		PFR28_05263	0.46	+0.4
6,022,781	-		PFR28_05263	0.46	+0.5
6,022,786	+		PFR28_05263	0.47	-1.6
6,022,786	+		PFR28_05263	0.47	+0.2
6,022,786	+		PFR28_05263	0.47	-1.2
6,022,786	+		PFR28_05263	0.47	-1.4
6,022,786	+		PFR28_05263	0.47	+0.4
6,022,786	+		PFR28_05263	0.47	+0.0
6,022,786	+		PFR28_05263	0.47	-0.9
6,022,786	+		PFR28_05263	0.47	+0.5
6,022,787	-		PFR28_05263	0.47	-1.6
6,022,787	-		PFR28_05263	0.47	-2.2
6,022,787	-		PFR28_05263	0.47	-1.0
6,022,787	-		PFR28_05263	0.47	-0.1
6,022,787	-		PFR28_05263	0.47	-0.7
6,022,906	+		PFR28_05263	0.55	-3.3
6,022,906	+		PFR28_05263	0.55	-1.0
6,022,906	+		PFR28_05263	0.55	+0.4
6,022,906	+		PFR28_05263	0.55	-0.5
6,022,935	+		PFR28_05263	0.57	-0.4