Experiment: Choline (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04622 and PFR28_04623 are separated by 63 nucleotides PFR28_04623 and PFR28_04624 are separated by 74 nucleotides
PFR28_04622: PFR28_04622 - Homoserine kinase, at 5,277,357 to 5,278,307
_04622
PFR28_04623: PFR28_04623 - hypothetical protein, at 5,278,371 to 5,278,658
_04623
PFR28_04624: PFR28_04624 - DNA polymerase I, at 5,278,733 to 5,281,501
_04624
Position (kb) 5278
5279 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5278.312 kb on - strand at 5278.325 kb on - strand at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.466 kb on - strand, within PFR28_04623 at 5278.501 kb on + strand, within PFR28_04623 at 5278.501 kb on + strand, within PFR28_04623 at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.662 kb on - strand at 5278.662 kb on - strand at 5278.698 kb on + strand at 5278.698 kb on + strand at 5279.561 kb on + strand, within PFR28_04624 at 5279.561 kb on + strand, within PFR28_04624 at 5279.561 kb on + strand, within PFR28_04624 at 5279.561 kb on + strand, within PFR28_04624 at 5279.562 kb on - strand, within PFR28_04624 at 5279.562 kb on - strand, within PFR28_04624 at 5279.562 kb on - strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624
Per-strain Table
Position Strand Gene LocusTag Fraction Choline (C) 10 mM remove 5,278,312 - +2.0 5,278,325 - -0.7 5,278,465 + PFR28_04623 0.33 -0.4 5,278,465 + PFR28_04623 0.33 -2.0 5,278,465 + PFR28_04623 0.33 -0.9 5,278,465 + PFR28_04623 0.33 -0.6 5,278,466 - PFR28_04623 0.33 -2.3 5,278,501 + PFR28_04623 0.45 -1.3 5,278,501 + PFR28_04623 0.45 -0.9 5,278,647 + -0.3 5,278,647 + -1.6 5,278,647 + -1.1 5,278,647 + -0.2 5,278,647 + -2.9 5,278,648 - +0.9 5,278,648 - -0.2 5,278,648 - +0.9 5,278,648 - +0.2 5,278,652 + +0.6 5,278,652 + +0.6 5,278,652 + -3.3 5,278,652 + -0.0 5,278,652 + +0.0 5,278,652 + -1.9 5,278,652 + -2.5 5,278,652 + -1.6 5,278,652 + -0.9 5,278,653 - -0.2 5,278,653 - -0.2 5,278,653 - +0.5 5,278,653 - -0.2 5,278,653 - -1.2 5,278,653 - +0.5 5,278,662 - -0.1 5,278,662 - +1.4 5,278,698 + -0.7 5,278,698 + -0.6 5,279,561 + PFR28_04624 0.30 +1.5 5,279,561 + PFR28_04624 0.30 +1.4 5,279,561 + PFR28_04624 0.30 +0.4 5,279,561 + PFR28_04624 0.30 -1.3 5,279,562 - PFR28_04624 0.30 -2.0 5,279,562 - PFR28_04624 0.30 +0.7 5,279,562 - PFR28_04624 0.30 -0.3 5,279,563 + PFR28_04624 0.30 +2.1 5,279,563 + PFR28_04624 0.30 -0.9 5,279,563 + PFR28_04624 0.30 -0.2 5,279,563 + PFR28_04624 0.30 -0.9 5,279,563 + PFR28_04624 0.30 -0.3
Or see this region's nucleotide sequence