Strain Fitness in Pseudomonas sp. RS175 around PFR28_04399

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
5,012,264	-				-0.0
5,012,264	-				-1.0
5,012,264	-				-0.2
5,012,264	-				+0.1
5,012,264	-				+0.1
5,012,264	-				+0.6
5,012,264	-				+0.3
5,012,501	+		PFR28_04398	0.44	-1.9
5,012,501	+		PFR28_04398	0.44	+0.3
5,012,501	+		PFR28_04398	0.44	-2.5
5,012,560	+		PFR28_04398	0.60	-1.1
5,012,560	+		PFR28_04398	0.60	-1.8
5,012,560	+		PFR28_04398	0.60	+0.4
5,012,560	+		PFR28_04398	0.60	-0.3
5,012,560	+		PFR28_04398	0.60	-1.1
5,012,561	-		PFR28_04398	0.60	+0.5
5,012,561	-		PFR28_04398	0.60	+0.8
5,012,561	-		PFR28_04398	0.60	-1.0
5,012,561	-		PFR28_04398	0.60	+0.1
5,012,561	-		PFR28_04398	0.60	+0.0
5,012,561	-		PFR28_04398	0.60	+2.5
5,012,561	-		PFR28_04398	0.60	-1.2
5,012,561	-		PFR28_04398	0.60	+0.2
5,012,561	-		PFR28_04398	0.60	-0.3
5,012,561	-		PFR28_04398	0.60	-0.3
5,012,562	+		PFR28_04398	0.61	+0.4
5,012,562	+		PFR28_04398	0.61	-1.3
5,012,562	+		PFR28_04398	0.61	-1.9
5,012,562	+		PFR28_04398	0.61	-0.6
5,012,563	-		PFR28_04398	0.61	+0.5
5,012,563	-		PFR28_04398	0.61	+0.7
5,012,563	-		PFR28_04398	0.61	-0.9
5,012,563	-		PFR28_04398	0.61	-0.0
5,012,740	+				+0.1
5,012,741	-				+0.2
5,012,741	-				+0.1
5,013,084	+		PFR28_04399	0.32	+0.8
5,013,084	+		PFR28_04399	0.32	-0.6
5,013,084	+		PFR28_04399	0.32	-1.3
5,013,085	-		PFR28_04399	0.32	+0.5
5,013,085	-		PFR28_04399	0.32	+0.1
5,013,085	-		PFR28_04399	0.32	-0.2
5,013,085	-		PFR28_04399	0.32	-1.0
5,013,085	-		PFR28_04399	0.32	-0.9
5,013,085	-		PFR28_04399	0.32	+0.9
5,013,085	-		PFR28_04399	0.32	-0.4
5,013,085	-		PFR28_04399	0.32	+1.1
5,013,085	-		PFR28_04399	0.32	-1.6
5,013,085	-		PFR28_04399	0.32	+0.4
5,013,210	+		PFR28_04399	0.41	+0.5
5,013,211	-		PFR28_04399	0.41	-0.6
5,013,231	+		PFR28_04399	0.43	-0.9
5,013,231	+		PFR28_04399	0.43	-3.2
5,013,589	-		PFR28_04399	0.70	+0.7
5,013,589	-		PFR28_04399	0.70	+0.7
5,013,636	+		PFR28_04399	0.74	+0.1
5,013,636	+		PFR28_04399	0.74	-1.7
5,013,675	+		PFR28_04399	0.77	-1.8
5,013,720	+		PFR28_04399	0.80	-0.1
5,013,720	+		PFR28_04399	0.80	-3.9
5,013,721	-		PFR28_04399	0.80	+0.5
5,013,740	-		PFR28_04399	0.82	+0.1
5,013,825	+		PFR28_04399	0.88	-1.7
5,013,826	-		PFR28_04399	0.88	+0.4
5,013,836	+		PFR28_04399	0.89	+0.7
5,013,924	+				-0.6
5,013,924	+				+0.8
5,013,924	+				+2.5
5,013,924	+				+1.9
5,013,924	+				-0.4
5,013,924	+				-2.9
5,013,924	+				-0.4
5,013,924	+				-2.4
5,013,924	+				+0.4
5,013,924	+				+1.4
5,013,924	+				+2.4
5,013,925	-				+0.4
5,013,925	-				+0.1
5,013,925	-				+0.5
5,013,925	-				-0.3
5,013,925	-				-1.4
5,013,925	-				+0.1
5,013,925	-				-0.3
5,013,925	-				-0.3
5,013,927	+				-0.1
5,013,927	+				+0.7
5,013,927	+				+0.8
5,013,927	+				-0.8
5,013,927	+				-0.5
5,013,927	+				-3.3
5,013,928	-				-3.1
5,013,928	-				+0.0
5,013,928	-				-0.4
5,013,928	-				-0.4
5,013,928	-				-0.4
5,013,979	+				-0.1
5,014,015	+				-1.1
5,014,015	+				+1.1
5,014,015	+				+0.1
5,014,016	-				-0.1
5,014,016	-				-2.0
5,014,069	-				+0.3
5,014,070	+				-1.1
5,014,071	-				+1.2
5,014,081	-				+1.1
5,014,136	+				-0.6
5,014,142	+				+0.0
5,014,142	+				+1.0
5,014,143	-				+0.9
5,014,262	+		PFR28_04400	0.27	+1.2
5,014,262	+		PFR28_04400	0.27	+0.8
5,014,262	+		PFR28_04400	0.27	+0.1
5,014,308	+		PFR28_04400	0.36	+1.2
5,014,308	+		PFR28_04400	0.36	+0.5
5,014,308	+		PFR28_04400	0.36	+0.1
5,014,309	-		PFR28_04400	0.36	+0.6
5,014,309	-		PFR28_04400	0.36	+0.5
5,014,309	-		PFR28_04400	0.36	+0.3
5,014,377	+		PFR28_04400	0.50	+0.9
5,014,377	+		PFR28_04400	0.50	+0.8
5,014,377	+		PFR28_04400	0.50	-1.2
5,014,377	+		PFR28_04400	0.50	+0.1
5,014,377	+		PFR28_04400	0.50	+0.9
5,014,378	-		PFR28_04400	0.51	+0.9
5,014,378	-		PFR28_04400	0.51	+0.5
5,014,378	-		PFR28_04400	0.51	-0.4
5,014,378	-		PFR28_04400	0.51	+0.3
5,014,378	-		PFR28_04400	0.51	+0.8
5,014,378	-		PFR28_04400	0.51	+0.2
5,014,471	-		PFR28_04400	0.70	-0.4
5,014,507	-		PFR28_04400	0.77	+0.3
5,014,566	+		PFR28_04400	0.89	+0.8
5,014,566	+		PFR28_04400	0.89	+0.3
5,014,566	+		PFR28_04400	0.89	-0.5
5,014,566	+		PFR28_04400	0.89	-1.4
5,014,566	+		PFR28_04400	0.89	+0.6
5,014,566	+		PFR28_04400	0.89	+0.4
5,014,566	+		PFR28_04400	0.89	-0.4
5,014,566	+		PFR28_04400	0.89	+1.2
5,014,566	+		PFR28_04400	0.89	-1.0
5,014,566	+		PFR28_04400	0.89	-0.0
5,014,566	+		PFR28_04400	0.89	+0.5
5,014,566	+		PFR28_04400	0.89	+0.9
5,014,567	-		PFR28_04400	0.89	+0.8
5,014,567	-		PFR28_04400	0.89	-1.7
5,014,567	-		PFR28_04400	0.89	+0.1
5,014,567	-		PFR28_04400	0.89	-1.2
5,014,567	-		PFR28_04400	0.89	-0.1
5,014,567	-		PFR28_04400	0.89	-0.0
5,014,567	-		PFR28_04400	0.89	+0.3
5,014,567	-		PFR28_04400	0.89	-0.0
5,014,567	-		PFR28_04400	0.89	+0.5
5,014,567	-		PFR28_04400	0.89	+0.1
5,014,567	-		PFR28_04400	0.89	-0.4
5,014,646	+				+0.1
5,014,646	+				+0.3
5,014,647	-				-0.3
5,014,668	+				-1.4
5,014,668	+				+0.4
5,014,668	+				-0.2
5,014,668	+				-1.3
5,014,668	+				+0.7
5,014,668	+				+0.5
5,014,668	+				+0.1
5,014,668	+				+0.7
5,014,668	+				-0.1
5,014,668	+				+1.7
5,014,668	+				-1.0
5,014,668	+				-0.3
5,014,668	+				+1.7
5,014,668	+				-0.0
5,014,668	+				+0.5
5,014,668	+				+0.5
5,014,668	+				+0.5
5,014,669	-				+0.0
5,014,669	-				-1.4
5,014,669	-				+1.1
5,014,669	-				+0.9
5,014,669	-				-0.2
5,014,669	-				+0.1
5,014,669	-				-1.2
5,014,669	-				-0.0
5,014,669	-				+0.1
5,014,669	-				-1.6
5,014,669	-				+0.9
5,014,786	-		PFR28_04401	0.42	+0.4
5,014,786	-		PFR28_04401	0.42	+0.3
5,014,786	-		PFR28_04401	0.42	+0.8