Strain Fitness in Pseudomonas sp. RS175 around PFR28_04316

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
4,922,319	+				-0.6
4,922,320	-				-0.5
4,922,320	-				-0.1
4,922,320	-				-1.0
4,922,332	+				-0.3
4,922,332	+				-1.3
4,922,332	+				+1.6
4,922,332	+				+0.2
4,922,332	+				+0.8
4,922,332	+				+1.2
4,922,333	-				-1.9
4,922,333	-				+2.1
4,922,333	-				+0.3
4,922,333	-				+0.7
4,922,333	-				-0.4
4,922,333	-				-0.6
4,922,333	-				-0.6
4,922,336	+				-0.1
4,922,337	-				+0.2
4,922,337	-				+1.1
4,922,337	-				-2.1
4,922,337	-				-0.8
4,922,337	-				+1.0
4,922,337	-				-0.1
4,922,354	+				+0.6
4,922,355	-				+1.3
4,922,355	-				-1.5
4,922,355	-				+2.1
4,922,355	-				+1.3
4,922,355	-				+0.1
4,922,355	-				-1.3
4,922,355	-				+0.8
4,922,355	-				-0.4
4,922,355	-				+0.3
4,922,355	-				-2.7
4,922,355	-				+0.7
4,922,355	-				-0.4
4,922,475	+		PFR28_04314	0.37	-0.3
4,922,475	+		PFR28_04314	0.37	-0.5
4,922,475	+		PFR28_04314	0.37	+0.9
4,922,475	+		PFR28_04314	0.37	-0.1
4,922,475	+		PFR28_04314	0.37	-1.4
4,922,475	+		PFR28_04314	0.37	-1.3
4,922,475	+		PFR28_04314	0.37	-0.5
4,922,476	-		PFR28_04314	0.37	-0.3
4,922,476	-		PFR28_04314	0.37	-1.8
4,922,565	+		PFR28_04314	0.65	+0.0
4,922,566	-		PFR28_04314	0.65	+0.1
4,922,566	-		PFR28_04314	0.65	-0.1
4,922,765	+				+0.4
4,922,786	+				-0.3
4,922,786	+				-0.9
4,922,787	-				+0.0
4,922,787	-				-2.9
4,922,787	-				+0.9
4,922,861	+		PFR28_04315	0.25	-0.0
4,922,862	-		PFR28_04315	0.25	+1.5
4,922,868	+		PFR28_04315	0.27	+1.0
4,922,868	+		PFR28_04315	0.27	+1.1
4,922,868	+		PFR28_04315	0.27	+0.0
4,922,869	-		PFR28_04315	0.27	-0.6
4,922,869	-		PFR28_04315	0.27	-0.5
4,922,939	+		PFR28_04315	0.45	+0.4
4,922,939	+		PFR28_04315	0.45	-1.1
4,922,939	+		PFR28_04315	0.45	+0.4
4,922,939	+		PFR28_04315	0.45	+0.3
4,922,939	+		PFR28_04315	0.45	+1.3
4,922,939	+		PFR28_04315	0.45	+0.4
4,922,939	+		PFR28_04315	0.45	-1.9
4,922,939	+		PFR28_04315	0.45	+0.9
4,922,939	+		PFR28_04315	0.45	-3.1
4,922,939	+		PFR28_04315	0.45	-0.3
4,922,939	+		PFR28_04315	0.45	-0.2
4,922,939	+		PFR28_04315	0.45	+0.0
4,922,939	+		PFR28_04315	0.45	-0.1
4,922,939	+		PFR28_04315	0.45	+1.3
4,922,939	+		PFR28_04315	0.45	+0.8
4,922,940	-		PFR28_04315	0.45	-1.1
4,922,940	-		PFR28_04315	0.45	+0.3
4,922,940	-		PFR28_04315	0.45	+0.1
4,922,940	-		PFR28_04315	0.45	+1.0
4,922,940	-		PFR28_04315	0.45	-2.7
4,922,940	-		PFR28_04315	0.45	+0.2
4,923,066	+		PFR28_04315	0.78	+0.3
4,923,067	-		PFR28_04315	0.78	+0.2
4,923,067	-		PFR28_04315	0.78	-1.5
4,923,067	-		PFR28_04315	0.78	+0.3
4,923,150	+				-0.2
4,923,150	+				-0.4
4,923,150	+				+0.4
4,923,150	+				-2.0
4,923,151	-				-1.9
4,923,151	-				+0.0
4,923,151	-				+1.3
4,923,200	+				+0.3
4,923,200	+				+3.0
4,923,200	+				-2.0
4,923,200	+				+0.1
4,923,201	-				+0.5
4,923,201	-				+0.8
4,923,201	-				-0.9
4,923,261	+				+1.2
4,923,261	+				+0.5
4,923,262	-				+1.2
4,923,331	-		PFR28_04316	0.12	+0.5
4,923,336	+		PFR28_04316	0.13	+1.0
4,923,336	+		PFR28_04316	0.13	-0.9
4,923,337	-		PFR28_04316	0.13	+0.2
4,923,337	-		PFR28_04316	0.13	-0.1
4,923,337	-		PFR28_04316	0.13	+0.4
4,923,337	-		PFR28_04316	0.13	-0.6
4,923,348	+		PFR28_04316	0.14	-0.6
4,923,348	+		PFR28_04316	0.14	-0.6
4,923,348	+		PFR28_04316	0.14	-2.0
4,923,349	-		PFR28_04316	0.14	-0.5
4,923,349	-		PFR28_04316	0.14	-0.4
4,923,349	-		PFR28_04316	0.14	+0.5
4,923,349	-		PFR28_04316	0.14	-0.7
4,923,444	+		PFR28_04316	0.23	-4.2
4,923,444	+		PFR28_04316	0.23	+0.7
4,923,444	+		PFR28_04316	0.23	-0.8
4,923,444	+		PFR28_04316	0.23	-0.4
4,923,444	+		PFR28_04316	0.23	-2.1
4,923,444	+		PFR28_04316	0.23	+0.4
4,923,445	-		PFR28_04316	0.23	-0.9
4,923,445	-		PFR28_04316	0.23	-0.9
4,923,578	+		PFR28_04316	0.35	+0.7
4,923,578	+		PFR28_04316	0.35	+0.0
4,923,579	-		PFR28_04316	0.35	+0.3
4,923,579	-		PFR28_04316	0.35	-0.5
4,923,629	-		PFR28_04316	0.40	-0.3
4,923,629	-		PFR28_04316	0.40	+0.3
4,923,629	-		PFR28_04316	0.40	+0.1
4,923,629	-		PFR28_04316	0.40	-0.5
4,923,629	-		PFR28_04316	0.40	-2.8
4,923,629	-		PFR28_04316	0.40	+0.5
4,923,629	-		PFR28_04316	0.40	+1.4
4,923,719	+		PFR28_04316	0.48	+0.7
4,923,719	+		PFR28_04316	0.48	+0.2
4,923,719	+		PFR28_04316	0.48	+0.3
4,923,719	+		PFR28_04316	0.48	+0.4
4,923,855	+		PFR28_04316	0.61	+0.5
4,923,855	+		PFR28_04316	0.61	-0.6
4,923,855	+		PFR28_04316	0.61	-0.6
4,923,856	-		PFR28_04316	0.61	-0.5
4,923,856	-		PFR28_04316	0.61	-0.8
4,923,856	-		PFR28_04316	0.61	+0.8
4,923,890	+		PFR28_04316	0.64	-0.2
4,923,959	+		PFR28_04316	0.70	+0.1
4,923,960	-		PFR28_04316	0.70	+0.0
4,923,978	-		PFR28_04316	0.72	-1.3
4,923,978	-		PFR28_04316	0.72	-1.9
4,923,978	-		PFR28_04316	0.72	-0.6
4,924,028	+		PFR28_04316	0.77	-2.7
4,924,029	-		PFR28_04316	0.77	-1.2
4,924,029	-		PFR28_04316	0.77	-0.6
4,924,029	-		PFR28_04316	0.77	+0.4
4,924,135	+		PFR28_04316	0.86	-0.4
4,924,135	+		PFR28_04316	0.86	-1.8
4,924,194	-				-0.6
4,924,206	+				+1.7
4,924,259	+				+1.5
4,924,259	+				-1.9
4,924,259	+				-0.1
4,924,259	+				+0.6
4,924,259	+				+0.1
4,924,260	-				-0.5
4,924,260	-				+0.1
4,924,260	-				-0.2
4,924,260	-				-0.1
4,924,260	-				+0.6
4,924,260	-				-0.6
4,924,269	+				+0.3
4,924,269	+				-0.2
4,924,269	+				-0.4
4,924,270	-				-0.5
4,924,346	+				-1.1
4,924,347	-				+0.9
4,924,347	-				-3.6
4,924,347	-				+0.5
4,924,347	-				+0.5
4,924,408	+				-1.3
4,924,422	+				-0.5
4,924,422	+				+0.8
4,924,422	+				+1.4
4,924,422	+				-0.3
4,924,423	-				+0.1
4,924,423	-				+0.9
4,924,423	-				-1.9
4,924,423	-				-0.6
4,924,471	-				-0.5
4,924,533	-				-3.0
4,924,533	-				+0.5
4,924,533	-				+0.1
4,924,533	-				+2.1
4,924,533	-				+0.6
4,924,533	-				-0.4
4,924,533	-				-0.1
4,924,593	+				+1.0
4,924,593	+				+0.8
4,924,593	+				-1.4
4,924,593	+				-0.3
4,924,594	-				+0.9
4,924,594	-				+0.4
4,924,594	-				-1.3
4,924,594	-				-1.1
4,924,634	+				+1.3
4,924,634	+				+0.0
4,924,635	-				-2.3
4,924,635	-				-1.9
4,924,635	-				-0.9
4,924,851	+		PFR28_04317	0.15	-2.7
4,924,851	+		PFR28_04317	0.15	-0.8
4,924,851	+		PFR28_04317	0.15	-0.4
4,924,851	+		PFR28_04317	0.15	+0.0
4,924,851	+		PFR28_04317	0.15	+2.2
4,924,852	-		PFR28_04317	0.15	+0.0
4,924,852	-		PFR28_04317	0.15	+2.7
4,924,951	-		PFR28_04317	0.21	-0.5
4,924,951	-		PFR28_04317	0.21	-0.4
4,924,977	+		PFR28_04317	0.22	+1.5
4,924,978	-		PFR28_04317	0.23	+0.5
4,924,978	-		PFR28_04317	0.23	+0.0
4,925,051	+		PFR28_04317	0.27	+0.1
4,925,052	-		PFR28_04317	0.27	-0.9
4,925,073	+		PFR28_04317	0.28	-1.1
4,925,073	+		PFR28_04317	0.28	-2.1
4,925,074	-		PFR28_04317	0.28	+0.4
4,925,074	-		PFR28_04317	0.28	+0.5
4,925,105	+		PFR28_04317	0.30	+0.7
4,925,124	+		PFR28_04317	0.32	-0.9
4,925,125	-		PFR28_04317	0.32	+0.9
4,925,125	-		PFR28_04317	0.32	+0.6
4,925,162	-		PFR28_04317	0.34	+0.9
4,925,241	+		PFR28_04317	0.39	+1.7
4,925,241	+		PFR28_04317	0.39	-0.9
4,925,241	+		PFR28_04317	0.39	-0.3
4,925,241	+		PFR28_04317	0.39	-0.2
4,925,242	-		PFR28_04317	0.39	-1.3
4,925,242	-		PFR28_04317	0.39	-0.1
4,925,242	-		PFR28_04317	0.39	+0.6
4,925,269	-		PFR28_04317	0.41	-0.0
4,925,269	-		PFR28_04317	0.41	-0.5