Strain Fitness in Pseudomonas sp. RS175 around PFR28_04296

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
4,900,636	+		PFR28_04295	0.38	+0.5
4,900,636	+		PFR28_04295	0.38	-1.4
4,900,636	+		PFR28_04295	0.38	-0.3
4,900,636	+		PFR28_04295	0.38	+2.4
4,900,636	+		PFR28_04295	0.38	+0.9
4,900,636	+		PFR28_04295	0.38	+0.8
4,900,636	+		PFR28_04295	0.38	-1.1
4,900,636	+		PFR28_04295	0.38	+1.4
4,900,637	-		PFR28_04295	0.38	+1.3
4,900,637	-		PFR28_04295	0.38	+0.3
4,900,637	-		PFR28_04295	0.38	-1.0
4,900,637	-		PFR28_04295	0.38	-0.4
4,900,637	-		PFR28_04295	0.38	-0.2
4,900,637	-		PFR28_04295	0.38	-1.5
4,900,655	-		PFR28_04295	0.40	-0.1
4,900,742	-		PFR28_04295	0.48	+0.7
4,900,742	-		PFR28_04295	0.48	-0.3
4,900,742	-		PFR28_04295	0.48	-1.5
4,900,891	+		PFR28_04295	0.61	-3.0
4,900,891	+		PFR28_04295	0.61	-0.5
4,900,891	+		PFR28_04295	0.61	-0.8
4,900,918	+		PFR28_04295	0.64	-1.6
4,900,918	+		PFR28_04295	0.64	-1.5
4,900,919	-		PFR28_04295	0.64	-2.3
4,900,919	-		PFR28_04295	0.64	-0.9
4,900,919	-		PFR28_04295	0.64	-0.1
4,900,930	+		PFR28_04295	0.65	-1.3
4,900,931	-		PFR28_04295	0.65	+1.7
4,901,026	+		PFR28_04295	0.73	-0.1
4,901,084	-		PFR28_04295	0.79	-2.8
4,901,136	+		PFR28_04295	0.83	+0.9
4,901,136	+		PFR28_04295	0.83	-1.8
4,901,136	+		PFR28_04295	0.83	-0.1
4,901,136	+		PFR28_04295	0.83	-1.7
4,901,136	+		PFR28_04295	0.83	+0.3
4,901,137	-		PFR28_04295	0.83	-1.1
4,901,137	-		PFR28_04295	0.83	+0.2
4,901,137	-		PFR28_04295	0.83	+1.7
4,901,143	+		PFR28_04295	0.84	-0.7
4,901,143	+		PFR28_04295	0.84	-0.9
4,901,144	-		PFR28_04295	0.84	+2.7
4,901,200	+		PFR28_04295	0.89	+1.1
4,901,200	+		PFR28_04295	0.89	+0.3
4,901,200	+		PFR28_04295	0.89	-0.9
4,901,200	+		PFR28_04295	0.89	-0.4
4,901,200	+		PFR28_04295	0.89	-0.6
4,901,201	-		PFR28_04295	0.89	-1.2
4,901,201	-		PFR28_04295	0.89	+1.3
4,901,201	-		PFR28_04295	0.89	-0.5
4,901,213	+				-0.4
4,901,213	+				-2.5
4,901,213	+				-2.5
4,901,213	+				-0.2
4,901,213	+				-0.5
4,901,213	+				+0.0
4,901,213	+				-1.4
4,901,213	+				-1.2
4,901,214	-				+0.6
4,901,214	-				-1.7
4,901,214	-				-0.1
4,901,214	-				-0.4
4,901,214	-				-2.1
4,901,214	-				-1.3
4,901,215	+				+0.2
4,901,215	+				-1.2
4,901,215	+				+0.5
4,901,215	+				-1.3
4,901,216	-				+0.1
4,901,216	-				-2.0
4,901,216	-				+1.2
4,901,216	-				+1.0
4,901,216	-				+0.1
4,901,298	+				-0.8
4,901,298	+				-1.8
4,901,298	+				+1.3
4,901,298	+				-0.8
4,901,299	-				-2.4
4,901,299	-				+0.7
4,901,299	-				+0.2
4,901,299	-				-0.0
4,901,299	-				+1.5
4,901,299	-				-2.0
4,901,306	+				+0.5
4,901,306	+				-0.4
4,901,306	+				-0.1
4,901,306	+				+0.2
4,901,307	-				-0.3
4,901,307	-				+0.7
4,901,310	+				+0.1
4,901,310	+				-2.2
4,901,310	+				-0.7
4,901,310	+				+1.0
4,901,310	+				-2.7
4,901,310	+				-1.1
4,901,310	+				-0.4
4,901,310	+				-1.6
4,901,310	+				+1.0
4,901,311	-				-0.5
4,901,311	-				+0.4
4,901,311	-				-1.6
4,901,311	-				-0.6
4,901,311	-				-0.6
4,901,311	-				+0.9
4,901,311	-				+0.9
4,901,337	+				+0.1
4,901,338	-				+0.6
4,901,404	+				-0.1
4,901,404	+				-0.4
4,901,405	-				-0.6
4,901,479	+				+0.0
4,901,479	+				-1.0
4,901,479	+				-1.5
4,901,479	+				+1.0
4,901,479	+				-2.3
4,901,479	+				+0.8
4,901,480	-				-3.6
4,901,480	-				-3.1
4,901,480	-				+0.1
4,901,480	-				-0.1
4,901,480	-				-0.8
4,901,480	-				+0.5
4,901,486	+				-1.2
4,901,486	+				+0.4
4,901,486	+				-0.0
4,901,486	+				-0.7
4,901,487	-				-1.2
4,901,487	-				+0.6
4,901,495	+				+1.3
4,901,495	+				+0.0
4,901,495	+				+0.0
4,901,495	+				-0.5
4,901,496	-				+0.2
4,901,500	+				-0.5
4,901,500	+				-0.2
4,901,500	+				+0.4
4,901,501	-				+0.5
4,901,501	-				+0.5
4,901,501	-				-0.5
4,901,621	+				-2.8
4,901,813	+		PFR28_04296	0.13	-3.0
4,901,927	+		PFR28_04296	0.22	-1.2
4,901,927	+		PFR28_04296	0.22	-2.4
4,901,927	+		PFR28_04296	0.22	-0.3
4,901,928	-		PFR28_04296	0.22	-2.3
4,901,928	-		PFR28_04296	0.22	-0.8
4,901,928	-		PFR28_04296	0.22	-1.0
4,901,928	-		PFR28_04296	0.22	-1.6
4,902,027	-		PFR28_04296	0.29	+1.0
4,902,110	+		PFR28_04296	0.35	+2.7
4,902,110	+		PFR28_04296	0.35	-0.1
4,902,110	+		PFR28_04296	0.35	+0.5
4,902,110	+		PFR28_04296	0.35	+0.6
4,902,110	+		PFR28_04296	0.35	-0.8
4,902,110	+		PFR28_04296	0.35	+0.5
4,902,111	-		PFR28_04296	0.35	+0.9
4,902,111	-		PFR28_04296	0.35	+0.5
4,902,111	-		PFR28_04296	0.35	-0.9
4,902,237	-		PFR28_04296	0.45	-0.9
4,902,269	+		PFR28_04296	0.47	-0.4
4,902,269	+		PFR28_04296	0.47	+0.8
4,902,269	+		PFR28_04296	0.47	-0.5
4,902,269	+		PFR28_04296	0.47	+1.0
4,902,269	+		PFR28_04296	0.47	+0.4
4,902,270	-		PFR28_04296	0.47	-2.1
4,902,270	-		PFR28_04296	0.47	-0.2
4,902,270	-		PFR28_04296	0.47	+0.5
4,902,431	+		PFR28_04296	0.59	-0.2
4,902,431	+		PFR28_04296	0.59	+0.2
4,902,486	+		PFR28_04296	0.63	+0.1
4,902,486	+		PFR28_04296	0.63	+0.0
4,902,486	+		PFR28_04296	0.63	+1.2
4,902,486	+		PFR28_04296	0.63	-0.8
4,902,486	+		PFR28_04296	0.63	-0.7
4,902,486	+		PFR28_04296	0.63	+0.0
4,902,486	+		PFR28_04296	0.63	-0.5
4,902,487	-		PFR28_04296	0.63	-0.1
4,902,487	-		PFR28_04296	0.63	+0.2
4,902,487	-		PFR28_04296	0.63	-1.7
4,902,487	-		PFR28_04296	0.63	+0.6
4,902,488	+		PFR28_04296	0.63	+0.3
4,902,488	+		PFR28_04296	0.63	+1.8
4,902,488	+		PFR28_04296	0.63	+0.9
4,902,488	+		PFR28_04296	0.63	+1.0
4,902,488	+		PFR28_04296	0.63	+0.2
4,902,488	+		PFR28_04296	0.63	+0.7
4,902,488	+		PFR28_04296	0.63	+3.3
4,902,488	+		PFR28_04296	0.63	-0.2
4,902,488	+		PFR28_04296	0.63	+0.4
4,902,488	+		PFR28_04296	0.63	-1.8
4,902,488	+		PFR28_04296	0.63	-4.8
4,902,488	+		PFR28_04296	0.63	+0.0
4,902,488	+		PFR28_04296	0.63	+1.5
4,902,488	+		PFR28_04296	0.63	-0.1
4,902,488	+		PFR28_04296	0.63	-0.3
4,902,488	+		PFR28_04296	0.63	-1.4
4,902,488	+		PFR28_04296	0.63	-0.6
4,902,488	+		PFR28_04296	0.63	-0.4
4,902,488	+		PFR28_04296	0.63	-0.9
4,902,488	+		PFR28_04296	0.63	+0.8
4,902,488	+		PFR28_04296	0.63	-0.0
4,902,488	+		PFR28_04296	0.63	-1.5
4,902,488	+		PFR28_04296	0.63	-1.1
4,902,488	+		PFR28_04296	0.63	-0.1
4,902,488	+		PFR28_04296	0.63	+0.6
4,902,489	-		PFR28_04296	0.63	+0.2
4,902,489	-		PFR28_04296	0.63	-0.9
4,902,489	-		PFR28_04296	0.63	+0.6
4,902,489	-		PFR28_04296	0.63	-0.7
4,902,489	-		PFR28_04296	0.63	-0.0
4,902,489	-		PFR28_04296	0.63	-0.9
4,902,489	-		PFR28_04296	0.63	-1.6
4,902,489	-		PFR28_04296	0.63	+1.7
4,902,489	-		PFR28_04296	0.63	+0.3
4,902,489	-		PFR28_04296	0.63	-0.3
4,902,489	-		PFR28_04296	0.63	-0.1
4,902,489	-		PFR28_04296	0.63	-2.0
4,902,489	-		PFR28_04296	0.63	+0.7
4,902,489	-		PFR28_04296	0.63	-1.3
4,902,489	-		PFR28_04296	0.63	+0.1
4,902,489	-		PFR28_04296	0.63	+0.4
4,902,489	-		PFR28_04296	0.63	-0.7
4,902,489	-		PFR28_04296	0.63	-2.7
4,902,489	-		PFR28_04296	0.63	-0.5
4,902,489	-		PFR28_04296	0.63	+0.8
4,902,489	-		PFR28_04296	0.63	-2.0
4,902,489	-		PFR28_04296	0.63	-0.4
4,902,489	-		PFR28_04296	0.63	-0.4
4,902,489	-		PFR28_04296	0.63	-0.3
4,902,489	-		PFR28_04296	0.63	-0.1
4,902,489	-		PFR28_04296	0.63	-0.7
4,902,489	-		PFR28_04296	0.63	-0.9
4,902,489	-		PFR28_04296	0.63	-0.1
4,902,489	-		PFR28_04296	0.63	-0.9
4,902,489	-		PFR28_04296	0.63	-1.3
4,902,489	-		PFR28_04296	0.63	-0.1
4,902,590	+		PFR28_04296	0.70	-1.3
4,902,591	-		PFR28_04296	0.70	-1.3
4,902,737	+		PFR28_04296	0.81	+0.1
4,902,737	+		PFR28_04296	0.81	-0.3
4,902,737	+		PFR28_04296	0.81	-1.0
4,902,737	+		PFR28_04296	0.81	-1.0
4,902,737	+		PFR28_04296	0.81	-0.4
4,902,737	+		PFR28_04296	0.81	-0.2
4,902,737	+		PFR28_04296	0.81	-0.5
4,902,737	+		PFR28_04296	0.81	+0.3
4,902,737	+		PFR28_04296	0.81	-0.7
4,902,738	-		PFR28_04296	0.81	+0.3
4,902,738	-		PFR28_04296	0.81	+0.8
4,902,738	-		PFR28_04296	0.81	-0.3
4,902,738	-		PFR28_04296	0.81	-0.8
4,902,738	-		PFR28_04296	0.81	+0.4
4,902,738	-		PFR28_04296	0.81	+1.8
4,902,738	-		PFR28_04296	0.81	-1.9
4,902,738	-		PFR28_04296	0.81	+1.1
4,902,738	-		PFR28_04296	0.81	+0.9
4,902,738	-		PFR28_04296	0.81	-1.0
4,902,738	-		PFR28_04296	0.81	-1.4
4,902,741	-		PFR28_04296	0.81	+0.1
4,902,864	-				+0.1
4,902,864	-				-0.5
4,902,864	-				-2.4
4,903,008	+				-0.2
4,903,008	+				-0.6
4,903,008	+				-0.1
4,903,008	+				+0.4
4,903,008	+				-1.8
4,903,008	+				+0.1
4,903,136	+				+1.7
4,903,136	+				+1.2
4,903,155	+				-1.5
4,903,163	+				+0.7
4,903,163	+				+0.3
4,903,163	+				+0.4
4,903,163	+				+0.7
4,903,163	+				-0.4
4,903,163	+				-2.7
4,903,163	+				-1.1
4,903,164	-				-3.5
4,903,164	-				-1.8
4,903,164	-				-3.8
4,903,164	-				-3.4
4,903,164	-				-0.9
4,903,245	-		PFR28_04297	0.14	-3.0
4,903,455	+		PFR28_04297	0.30	-0.8
4,903,844	+		PFR28_04297	0.58	-2.8
4,903,844	+		PFR28_04297	0.58	-0.6
4,903,844	+		PFR28_04297	0.58	+0.0
4,903,845	-		PFR28_04297	0.58	-0.5
4,903,845	-		PFR28_04297	0.58	+0.5
4,903,845	-		PFR28_04297	0.58	+0.9
4,903,845	-		PFR28_04297	0.58	-1.7
4,903,845	-		PFR28_04297	0.58	-1.5
4,903,845	-		PFR28_04297	0.58	+0.6
4,903,979	+		PFR28_04297	0.68	-1.0
4,903,979	+		PFR28_04297	0.68	+1.6
4,903,979	+		PFR28_04297	0.68	+0.4
4,903,980	-		PFR28_04297	0.68	-0.2
4,903,980	-		PFR28_04297	0.68	+1.7
4,903,980	-		PFR28_04297	0.68	-0.1