Strain Fitness in Pseudomonas sp. RS175 around PFR28_04162

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
4,756,878	+		PFR28_04161	0.87	-2.3
4,756,878	+		PFR28_04161	0.87	-3.0
4,757,032	+				-3.1
4,757,032	+				-2.8
4,757,119	+				-1.1
4,757,146	-				-0.1
4,757,157	+				-1.9
4,757,157	+				+0.2
4,757,157	+				-3.5
4,757,158	-				-2.3
4,757,158	-				-0.7
4,757,166	+				-1.3
4,757,197	+				-2.6
4,757,387	+				+1.0
4,757,387	+				+1.5
4,757,387	+				+1.9
4,757,387	+				+1.3
4,757,387	+				+0.9
4,757,387	+				-0.0
4,757,387	+				+1.5
4,757,388	-				+2.2
4,757,388	-				+2.0
4,757,388	-				+1.0
4,757,388	-				+0.7
4,757,388	-				+1.7
4,757,388	-				+0.3
4,757,440	+				-0.5
4,757,440	+				-0.5
4,757,441	-				+1.6
4,757,475	+				-0.1
4,757,483	+				-0.5
4,757,510	+				-2.1
4,757,510	+				-1.0
4,757,510	+				-2.1
4,757,510	+				-0.0
4,757,510	+				-0.6
4,757,510	+				-1.3
4,757,511	-				-1.2
4,757,511	-				+2.7
4,757,511	-				+0.3
4,757,522	+				-0.6
4,757,522	+				-1.3
4,757,522	+				-2.0
4,757,522	+				-1.8
4,757,523	-				+1.4
4,757,523	-				+0.2
4,757,528	+				-2.2
4,757,528	+				-1.5
4,757,528	+				+0.9
4,757,536	+				-0.8
4,757,536	+				-0.5
4,757,537	-				+1.5
4,757,537	-				+0.6
4,757,537	-				-0.5
4,757,537	-				+0.2
4,757,565	+				-0.5
4,757,566	-				-0.0
4,757,566	-				+1.2
4,757,592	+				-1.6
4,757,592	+				+0.6
4,757,593	-				+0.6
4,757,648	+				-1.0
4,757,648	+				-1.9
4,757,648	+				-2.3
4,757,648	+				-1.8
4,757,648	+				+0.6
4,757,648	+				-1.5
4,757,649	-				-1.6
4,757,650	+				-0.7
4,757,650	+				+0.3
4,757,650	+				-0.1
4,757,651	-				-2.4
4,757,651	-				-2.4
4,757,651	-				-2.6
4,757,651	-				-1.6
4,757,687	+				-2.0
4,757,687	+				-0.5
4,757,687	+				-0.8
4,757,688	-				-1.6
4,758,022	+		PFR28_04162	0.31	-0.7
4,758,022	+		PFR28_04162	0.31	-1.7
4,758,022	+		PFR28_04162	0.31	-1.2
4,758,023	-		PFR28_04162	0.31	-1.0
4,758,023	-		PFR28_04162	0.31	-1.3
4,758,070	+		PFR28_04162	0.34	-0.4
4,758,070	+		PFR28_04162	0.34	-2.1
4,758,070	+		PFR28_04162	0.34	-1.2
4,758,070	+		PFR28_04162	0.34	-0.5
4,758,070	+		PFR28_04162	0.34	-1.9
4,758,070	+		PFR28_04162	0.34	-3.0
4,758,071	-		PFR28_04162	0.34	-2.6
4,758,071	-		PFR28_04162	0.34	-2.6
4,758,071	-		PFR28_04162	0.34	-2.2
4,758,071	-		PFR28_04162	0.34	-1.3
4,758,071	-		PFR28_04162	0.34	-1.1
4,758,071	-		PFR28_04162	0.34	-2.0
4,758,166	+		PFR28_04162	0.41	-2.1
4,758,166	+		PFR28_04162	0.41	-0.6
4,758,167	-		PFR28_04162	0.41	-3.1
4,758,167	-		PFR28_04162	0.41	-3.3
4,758,167	-		PFR28_04162	0.41	-1.1
4,758,236	+		PFR28_04162	0.46	-2.6
4,758,237	-		PFR28_04162	0.46	-1.0
4,758,237	-		PFR28_04162	0.46	-1.2
4,758,547	+		PFR28_04162	0.69	-1.3
4,758,548	-		PFR28_04162	0.69	-2.1
4,758,548	-		PFR28_04162	0.69	-0.4
4,758,548	-		PFR28_04162	0.69	-1.4
4,758,550	+		PFR28_04162	0.69	-0.5
4,758,550	+		PFR28_04162	0.69	-4.1
4,758,550	+		PFR28_04162	0.69	-2.1
4,758,551	-		PFR28_04162	0.69	-0.3
4,758,551	-		PFR28_04162	0.69	-4.1
4,758,551	-		PFR28_04162	0.69	-2.8
4,758,551	-		PFR28_04162	0.69	+0.6
4,758,551	-		PFR28_04162	0.69	-1.7
4,758,551	-		PFR28_04162	0.69	-2.3
4,758,551	-		PFR28_04162	0.69	-2.3
4,758,657	-		PFR28_04162	0.77	-0.5
4,758,657	-		PFR28_04162	0.77	-1.6
4,758,964	-				-1.3
4,758,982	+				-1.5
4,758,982	+				-1.0
4,758,982	+				-0.8
4,758,982	+				-1.1
4,758,983	-				+0.7
4,758,983	-				-1.6
4,758,983	-				-0.5
4,758,983	-				-1.6
4,758,983	-				-0.6
4,759,037	+				-0.8
4,759,038	-				-0.2
4,759,145	+				-0.5
4,759,146	-				+0.9
4,759,146	-				-0.7
4,759,146	-				-0.6
4,759,195	+				+0.7
4,759,240	-				-2.8
4,759,253	+				-1.0
4,759,253	+				-1.6
4,759,274	+				-0.6
4,759,274	+				+0.1
4,759,274	+				-1.1
4,759,274	+				-0.2
4,759,274	+				-0.9
4,759,274	+				-1.4
4,759,274	+				-1.8
4,759,274	+				-0.9
4,759,274	+				-1.6
4,759,274	+				-1.5
4,759,275	-				-3.1
4,759,275	-				-2.3
4,759,275	-				-3.3
4,759,275	-				-3.3
4,759,275	-				-2.4
4,759,275	-				-2.3
4,759,385	+				-1.3
4,759,571	+		PFR28_04163	0.17	-3.9
4,759,571	+		PFR28_04163	0.17	-4.5
4,759,571	+		PFR28_04163	0.17	-1.4
4,759,572	-		PFR28_04163	0.18	-4.2
4,759,572	-		PFR28_04163	0.18	-2.2
4,759,572	-		PFR28_04163	0.18	-0.3
4,759,610	+		PFR28_04163	0.22	-4.3
4,759,610	+		PFR28_04163	0.22	-3.6
4,759,611	-		PFR28_04163	0.22	-1.1
4,759,611	-		PFR28_04163	0.22	-3.3
4,759,611	-		PFR28_04163	0.22	-2.0
4,759,644	+		PFR28_04163	0.25	-4.2
4,759,644	+		PFR28_04163	0.25	-4.2
4,759,644	+		PFR28_04163	0.25	-2.4
4,759,644	+		PFR28_04163	0.25	-3.0
4,759,644	+		PFR28_04163	0.25	-4.3
4,759,644	+		PFR28_04163	0.25	-2.2
4,759,645	-		PFR28_04163	0.25	-2.3
4,759,645	-		PFR28_04163	0.25	-1.7
4,759,645	-		PFR28_04163	0.25	-5.2
4,759,645	-		PFR28_04163	0.25	-4.0
4,759,745	+		PFR28_04163	0.36	-2.5
4,759,745	+		PFR28_04163	0.36	-3.1
4,759,746	-		PFR28_04163	0.36	-2.5
4,759,770	+		PFR28_04163	0.38	-0.9
4,759,770	+		PFR28_04163	0.38	-1.5
4,759,771	-		PFR28_04163	0.39	-2.7
4,759,771	-		PFR28_04163	0.39	-4.5
4,759,771	-		PFR28_04163	0.39	-2.8
4,759,771	-		PFR28_04163	0.39	-1.1
4,759,771	-		PFR28_04163	0.39	-2.1
4,759,771	-		PFR28_04163	0.39	-1.8
4,759,771	-		PFR28_04163	0.39	-1.1
4,759,771	-		PFR28_04163	0.39	-2.2
4,759,771	-		PFR28_04163	0.39	-2.2
4,759,772	+		PFR28_04163	0.39	-4.3
4,759,772	+		PFR28_04163	0.39	-0.3
4,759,772	+		PFR28_04163	0.39	-2.6
4,759,772	+		PFR28_04163	0.39	-4.3
4,759,772	+		PFR28_04163	0.39	-0.6
4,759,772	+		PFR28_04163	0.39	-3.6
4,759,772	+		PFR28_04163	0.39	-4.6
4,759,772	+		PFR28_04163	0.39	-1.4
4,759,773	-		PFR28_04163	0.39	-1.3
4,759,773	-		PFR28_04163	0.39	-3.6
4,759,773	-		PFR28_04163	0.39	-3.6
4,759,773	-		PFR28_04163	0.39	-1.8
4,759,773	-		PFR28_04163	0.39	-2.4
4,759,773	-		PFR28_04163	0.39	-3.5
4,759,773	-		PFR28_04163	0.39	-3.9
4,759,773	-		PFR28_04163	0.39	-1.1
4,759,773	-		PFR28_04163	0.39	-3.1
4,759,838	+		PFR28_04163	0.46	+1.7
4,759,838	+		PFR28_04163	0.46	-1.6
4,759,838	+		PFR28_04163	0.46	-2.2
4,759,839	-		PFR28_04163	0.46	-4.6