Strain Fitness in Pseudomonas sp. RS175 around PFR28_03490

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
4,027,334	+		PFR28_03489	0.70	+0.4
4,027,335	-		PFR28_03489	0.70	+0.6
4,027,335	-		PFR28_03489	0.70	-0.5
4,027,430	+		PFR28_03489	0.74	+1.6
4,027,431	-		PFR28_03489	0.74	+0.7
4,027,431	-		PFR28_03489	0.74	+0.4
4,027,431	-		PFR28_03489	0.74	-1.2
4,027,431	-		PFR28_03489	0.74	-0.1
4,027,490	-		PFR28_03489	0.77	+0.4
4,027,490	-		PFR28_03489	0.77	+0.7
4,027,500	+		PFR28_03489	0.77	+1.4
4,027,501	-		PFR28_03489	0.77	-0.6
4,027,550	-		PFR28_03489	0.80	-0.2
4,027,550	-		PFR28_03489	0.80	+0.1
4,027,576	+		PFR28_03489	0.81	+0.8
4,027,600	+		PFR28_03489	0.82	-0.6
4,027,600	+		PFR28_03489	0.82	+0.5
4,027,600	+		PFR28_03489	0.82	+0.8
4,027,601	-		PFR28_03489	0.82	+0.7
4,027,601	-		PFR28_03489	0.82	-0.2
4,027,601	-		PFR28_03489	0.82	-0.0
4,027,601	-		PFR28_03489	0.82	+1.2
4,027,615	+		PFR28_03489	0.82	+0.8
4,027,615	+		PFR28_03489	0.82	-0.4
4,027,726	+		PFR28_03489	0.87	-2.7
4,027,726	+		PFR28_03489	0.87	-0.1
4,027,726	+		PFR28_03489	0.87	-0.9
4,027,727	-		PFR28_03489	0.87	-0.0
4,027,730	+		PFR28_03489	0.87	+0.1
4,027,731	-		PFR28_03489	0.87	+0.4
4,027,750	+		PFR28_03489	0.88	-0.5
4,027,750	+		PFR28_03489	0.88	-1.1
4,027,750	+		PFR28_03489	0.88	-0.0
4,027,750	+		PFR28_03489	0.88	+0.3
4,027,750	+		PFR28_03489	0.88	-1.8
4,027,751	-		PFR28_03489	0.88	-1.2
4,027,767	+		PFR28_03489	0.89	+0.9
4,027,767	+		PFR28_03489	0.89	+0.3
4,027,767	+		PFR28_03489	0.89	+0.1
4,027,767	+		PFR28_03489	0.89	+0.1
4,027,767	+		PFR28_03489	0.89	+0.0
4,027,768	-		PFR28_03489	0.89	-1.0
4,027,768	-		PFR28_03489	0.89	+1.2
4,027,768	-		PFR28_03489	0.89	+0.6
4,027,768	-		PFR28_03489	0.89	-1.8
4,027,768	-		PFR28_03489	0.89	+0.3
4,027,783	-		PFR28_03489	0.90	+0.8
4,028,071	+				-0.4
4,028,072	-				+0.2
4,028,096	+				+0.0
4,028,097	-				-1.0
4,028,227	-				+1.0
4,028,227	-				-1.9
4,028,227	-				+0.8
4,028,248	+				-0.8
4,028,248	+				+0.8
4,028,248	+				+0.9
4,028,248	+				-2.7
4,028,248	+				+0.5
4,028,248	+				-0.3
4,028,249	-				-0.1
4,028,249	-				+0.4
4,028,276	-				+0.2
4,028,276	-				-0.4
4,028,276	-				+0.6
4,028,320	+		PFR28_03490	0.12	+0.6
4,028,335	+		PFR28_03490	0.13	-0.3
4,028,345	+		PFR28_03490	0.14	+1.4
4,028,345	+		PFR28_03490	0.14	-0.4
4,028,345	+		PFR28_03490	0.14	-0.8
4,028,345	+		PFR28_03490	0.14	+0.5
4,028,345	+		PFR28_03490	0.14	+1.4
4,028,345	+		PFR28_03490	0.14	+0.3
4,028,345	+		PFR28_03490	0.14	-0.3
4,028,345	+		PFR28_03490	0.14	+1.0
4,028,345	+		PFR28_03490	0.14	-1.0
4,028,345	+		PFR28_03490	0.14	+0.0
4,028,345	+		PFR28_03490	0.14	-2.1
4,028,346	-		PFR28_03490	0.14	+0.5
4,028,346	-		PFR28_03490	0.14	-0.5
4,028,346	-		PFR28_03490	0.14	-1.4
4,028,346	-		PFR28_03490	0.14	+0.4
4,028,346	-		PFR28_03490	0.14	+0.5
4,028,346	-		PFR28_03490	0.14	-0.7
4,028,350	+		PFR28_03490	0.14	+1.4
4,028,350	+		PFR28_03490	0.14	-1.0
4,028,351	-		PFR28_03490	0.14	+0.6
4,028,351	-		PFR28_03490	0.14	+0.6
4,028,351	-		PFR28_03490	0.14	+0.8
4,028,351	-		PFR28_03490	0.14	-0.5
4,028,351	-		PFR28_03490	0.14	+0.4
4,028,351	-		PFR28_03490	0.14	-0.5
4,028,351	-		PFR28_03490	0.14	-0.2
4,028,488	+		PFR28_03490	0.24	+0.8
4,028,489	-		PFR28_03490	0.24	-1.5
4,028,489	-		PFR28_03490	0.24	+1.4
4,028,608	+		PFR28_03490	0.32	-0.7
4,028,608	+		PFR28_03490	0.32	+0.6
4,028,608	+		PFR28_03490	0.32	-1.7
4,028,608	+		PFR28_03490	0.32	-0.1
4,028,609	-		PFR28_03490	0.32	-0.7
4,028,633	+		PFR28_03490	0.34	-1.7
4,028,764	+		PFR28_03490	0.43	+2.0
4,028,797	+		PFR28_03490	0.46	-0.2
4,028,797	+		PFR28_03490	0.46	+0.8
4,028,797	+		PFR28_03490	0.46	-2.7
4,028,798	-		PFR28_03490	0.46	-0.7
4,028,798	-		PFR28_03490	0.46	+0.4
4,028,798	-		PFR28_03490	0.46	-0.7
4,028,798	-		PFR28_03490	0.46	+0.0
4,028,798	-		PFR28_03490	0.46	-1.5
4,028,798	-		PFR28_03490	0.46	+0.1
4,028,902	+		PFR28_03490	0.53	-1.3
4,029,174	+		PFR28_03490	0.72	-1.2
4,029,175	-		PFR28_03490	0.72	+1.6
4,029,175	-		PFR28_03490	0.72	+0.3
4,029,175	-		PFR28_03490	0.72	+0.4
4,029,192	-		PFR28_03490	0.73	+1.5
4,029,199	+		PFR28_03490	0.74	+1.6
4,029,199	+		PFR28_03490	0.74	-0.7
4,029,199	+		PFR28_03490	0.74	+0.3
4,029,199	+		PFR28_03490	0.74	+0.3
4,029,200	-		PFR28_03490	0.74	+0.7
4,029,200	-		PFR28_03490	0.74	+0.6
4,029,200	-		PFR28_03490	0.74	+0.3
4,029,200	-		PFR28_03490	0.74	+0.0
4,029,253	+		PFR28_03490	0.78	+0.6
4,029,253	+		PFR28_03490	0.78	-0.4
4,029,253	+		PFR28_03490	0.78	+0.4
4,029,254	-		PFR28_03490	0.78	-0.4
4,029,254	-		PFR28_03490	0.78	-0.6
4,029,254	-		PFR28_03490	0.78	+0.1
4,029,254	-		PFR28_03490	0.78	+0.0
4,029,254	-		PFR28_03490	0.78	-0.8
4,029,292	+		PFR28_03490	0.80	+0.0
4,029,305	-		PFR28_03490	0.81	+0.6
4,029,366	+		PFR28_03490	0.86	+1.1
4,029,366	+		PFR28_03490	0.86	-0.8
4,029,367	-		PFR28_03490	0.86	+0.0
4,029,367	-		PFR28_03490	0.86	-0.9
4,029,394	+		PFR28_03490	0.88	+0.7
4,029,394	+		PFR28_03490	0.88	+1.6
4,029,394	+		PFR28_03490	0.88	-0.1
4,029,394	+		PFR28_03490	0.88	-3.1
4,029,394	+		PFR28_03490	0.88	-2.5
4,029,394	+		PFR28_03490	0.88	+0.2
4,029,394	+		PFR28_03490	0.88	-0.5
4,029,395	-		PFR28_03490	0.88	+0.5
4,029,395	-		PFR28_03490	0.88	+0.8
4,029,395	-		PFR28_03490	0.88	+0.3
4,029,395	-		PFR28_03490	0.88	+0.7
4,029,395	-		PFR28_03490	0.88	+0.8
4,029,395	-		PFR28_03490	0.88	+0.0
4,029,395	-		PFR28_03490	0.88	-0.2
4,029,395	-		PFR28_03490	0.88	-0.5
4,029,395	-		PFR28_03490	0.88	+0.8
4,029,395	-		PFR28_03490	0.88	+0.9
4,029,395	-		PFR28_03490	0.88	+0.6
4,029,569	+				+0.3
4,029,569	+				+0.6
4,029,569	+				-0.2
4,029,570	-				-2.3
4,029,570	-				+0.6
4,029,575	+				-1.2
4,029,575	+				+0.5
4,029,575	+				+0.4
4,029,575	+				-0.1
4,029,575	+				-0.6
4,029,575	+				-0.2
4,029,575	+				-0.4
4,029,575	+				+0.5
4,029,575	+				+0.4
4,029,575	+				-0.1
4,029,575	+				+0.5
4,029,575	+				+0.7
4,029,575	+				+1.2
4,029,575	+				+0.3
4,029,576	-				+1.2
4,029,576	-				-0.3
4,029,576	-				+0.3
4,029,576	-				+0.4
4,029,576	-				-2.1
4,029,576	-				+1.2
4,029,576	-				+0.9
4,029,576	-				+0.6
4,029,576	-				+0.1
4,029,576	-				+0.4
4,029,576	-				-1.9
4,029,576	-				+0.1
4,029,576	-				-1.1
4,029,631	-				+0.9
4,029,716	+				+0.5
4,029,717	-				-0.8
4,029,718	+				-0.8
4,029,718	+				+1.4
4,029,718	+				+0.5
4,029,719	-				-0.3
4,029,719	-				+0.3
4,029,719	-				+0.2
4,029,719	-				-0.4
4,029,802	+				-0.3
4,029,802	+				+1.1
4,029,802	+				+1.0
4,029,803	-				-2.9
4,029,803	-				-0.8
4,029,805	+				-1.2
4,029,843	-				-0.5
4,029,843	-				-1.5
4,029,937	+				-0.7
4,029,937	+				-2.6
4,029,937	+				+0.5
4,029,937	+				+0.2
4,029,938	-				+0.3
4,029,938	-				-0.5
4,029,938	-				-0.9
4,029,938	-				-0.1
4,029,938	-				+0.5
4,029,989	+				-0.7
4,029,989	+				-0.3
4,029,990	-				-3.7
4,030,020	+				-0.5
4,030,021	-				-0.5
4,030,107	+				+1.8
4,030,107	+				+0.6
4,030,108	-				-0.7
4,030,290	+		PFR28_03491	0.28	-1.1
4,030,290	+		PFR28_03491	0.28	+0.1
4,030,290	+		PFR28_03491	0.28	+0.7
4,030,290	+		PFR28_03491	0.28	+1.6
4,030,290	+		PFR28_03491	0.28	+0.4
4,030,290	+		PFR28_03491	0.28	+2.2
4,030,290	+		PFR28_03491	0.28	-1.0
4,030,291	-		PFR28_03491	0.28	-1.7
4,030,291	-		PFR28_03491	0.28	-0.3
4,030,291	-		PFR28_03491	0.28	+0.9
4,030,291	-		PFR28_03491	0.28	-0.1
4,030,291	-		PFR28_03491	0.28	+1.4
4,030,390	+		PFR28_03491	0.38	-0.2
4,030,390	+		PFR28_03491	0.38	+0.6
4,030,391	-		PFR28_03491	0.38	-0.9
4,030,391	-		PFR28_03491	0.38	+0.9
4,030,415	+		PFR28_03491	0.40	-0.3
4,030,416	-		PFR28_03491	0.41	-0.7
4,030,423	+		PFR28_03491	0.41	-2.6
4,030,423	+		PFR28_03491	0.41	-1.1
4,030,423	+		PFR28_03491	0.41	-1.5
4,030,423	+		PFR28_03491	0.41	-2.5
4,030,423	+		PFR28_03491	0.41	-0.8
4,030,424	-		PFR28_03491	0.41	+0.0
4,030,424	-		PFR28_03491	0.41	-0.7
4,030,424	-		PFR28_03491	0.41	-0.2
4,030,424	-		PFR28_03491	0.41	+0.1
4,030,555	+		PFR28_03491	0.55	-0.8
4,030,555	+		PFR28_03491	0.55	+0.9
4,030,556	-		PFR28_03491	0.55	+1.6
4,030,556	-		PFR28_03491	0.55	-1.1
4,030,564	-		PFR28_03491	0.56	-1.4
4,030,564	-		PFR28_03491	0.56	+2.0