Strain Fitness in Pseudomonas sp. RS175 around PFR28_02613

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
3,087,108	-		PFR28_02611	0.45	-0.8
3,087,108	-		PFR28_02611	0.45	+0.8
3,087,120	-		PFR28_02611	0.46	-1.8
3,087,128	+		PFR28_02611	0.47	-2.1
3,087,128	+		PFR28_02611	0.47	+1.1
3,087,128	+		PFR28_02611	0.47	-0.7
3,087,128	+		PFR28_02611	0.47	-2.5
3,087,128	+		PFR28_02611	0.47	+0.3
3,087,128	+		PFR28_02611	0.47	-0.6
3,087,128	+		PFR28_02611	0.47	+0.2
3,087,128	+		PFR28_02611	0.47	+0.7
3,087,128	+		PFR28_02611	0.47	+0.1
3,087,129	-		PFR28_02611	0.48	-0.2
3,087,129	-		PFR28_02611	0.48	-1.4
3,087,129	-		PFR28_02611	0.48	-0.1
3,087,129	-		PFR28_02611	0.48	+0.3
3,087,129	-		PFR28_02611	0.48	-1.1
3,087,129	-		PFR28_02611	0.48	-0.5
3,087,129	-		PFR28_02611	0.48	-2.5
3,087,129	-		PFR28_02611	0.48	+0.7
3,087,129	-		PFR28_02611	0.48	+1.0
3,087,129	-		PFR28_02611	0.48	+0.0
3,087,129	-		PFR28_02611	0.48	-0.3
3,087,130	+		PFR28_02611	0.48	-0.1
3,087,130	+		PFR28_02611	0.48	-0.3
3,087,130	+		PFR28_02611	0.48	+0.3
3,087,130	+		PFR28_02611	0.48	+0.9
3,087,130	+		PFR28_02611	0.48	+1.3
3,087,130	+		PFR28_02611	0.48	+0.8
3,087,130	+		PFR28_02611	0.48	+0.5
3,087,130	+		PFR28_02611	0.48	-0.6
3,087,130	+		PFR28_02611	0.48	-0.8
3,087,130	+		PFR28_02611	0.48	-1.1
3,087,130	+		PFR28_02611	0.48	+0.7
3,087,130	+		PFR28_02611	0.48	+1.0
3,087,130	+		PFR28_02611	0.48	+1.5
3,087,131	-		PFR28_02611	0.48	+1.3
3,087,131	-		PFR28_02611	0.48	-1.3
3,087,131	-		PFR28_02611	0.48	-0.8
3,087,131	-		PFR28_02611	0.48	-0.8
3,087,131	-		PFR28_02611	0.48	-1.1
3,087,131	-		PFR28_02611	0.48	+0.9
3,087,131	-		PFR28_02611	0.48	+0.5
3,087,131	-		PFR28_02611	0.48	+0.7
3,087,131	-		PFR28_02611	0.48	-0.0
3,087,131	-		PFR28_02611	0.48	-0.9
3,087,131	-		PFR28_02611	0.48	+0.5
3,087,131	-		PFR28_02611	0.48	-2.2
3,087,132	+		PFR28_02611	0.48	-1.4
3,087,132	+		PFR28_02611	0.48	-3.7
3,087,132	+		PFR28_02611	0.48	-0.4
3,087,132	+		PFR28_02611	0.48	-1.8
3,087,132	+		PFR28_02611	0.48	-0.0
3,087,132	+		PFR28_02611	0.48	-1.7
3,087,132	+		PFR28_02611	0.48	-0.7
3,087,132	+		PFR28_02611	0.48	+0.7
3,087,132	+		PFR28_02611	0.48	-0.0
3,087,133	-		PFR28_02611	0.48	+0.2
3,087,133	-		PFR28_02611	0.48	+0.6
3,087,133	-		PFR28_02611	0.48	-1.4
3,087,133	-		PFR28_02611	0.48	-0.5
3,087,133	-		PFR28_02611	0.48	-0.5
3,087,133	-		PFR28_02611	0.48	-1.1
3,087,133	-		PFR28_02611	0.48	-0.3
3,087,133	-		PFR28_02611	0.48	-0.0
3,087,161	+		PFR28_02611	0.52	-0.1
3,087,161	+		PFR28_02611	0.52	+0.1
3,087,161	+		PFR28_02611	0.52	-2.2
3,087,162	-		PFR28_02611	0.52	-0.5
3,087,299	+		PFR28_02611	0.72	+1.0
3,087,299	+		PFR28_02611	0.72	+1.2
3,087,299	+		PFR28_02611	0.72	-1.2
3,087,299	+		PFR28_02611	0.72	+0.2
3,087,299	+		PFR28_02611	0.72	+0.7
3,087,299	+		PFR28_02611	0.72	-1.5
3,087,299	+		PFR28_02611	0.72	-0.8
3,087,299	+		PFR28_02611	0.72	+0.3
3,087,300	-		PFR28_02611	0.72	-2.0
3,087,300	-		PFR28_02611	0.72	-2.5
3,087,300	-		PFR28_02611	0.72	-1.2
3,087,300	-		PFR28_02611	0.72	-3.2
3,087,300	-		PFR28_02611	0.72	+0.9
3,087,308	+		PFR28_02611	0.73	-1.9
3,087,309	-		PFR28_02611	0.73	-0.4
3,087,309	-		PFR28_02611	0.73	-0.1
3,087,309	-		PFR28_02611	0.73	+0.7
3,087,396	+		PFR28_02611	0.85	+1.1
3,087,396	+		PFR28_02611	0.85	-1.9
3,087,398	+		PFR28_02611	0.86	-0.4
3,087,398	+		PFR28_02611	0.86	+0.4
3,087,399	-		PFR28_02611	0.86	-0.3
3,087,399	-		PFR28_02611	0.86	+0.0
3,087,399	-		PFR28_02611	0.86	+0.2
3,087,437	+				-1.8
3,087,437	+				-1.3
3,087,437	+				-0.5
3,087,437	+				-1.0
3,087,437	+				-0.4
3,087,438	-				+0.9
3,087,438	-				-0.2
3,087,438	-				+0.7
3,087,438	-				-0.6
3,087,497	+				+0.4
3,087,497	+				+2.0
3,087,497	+				-1.1
3,087,497	+				+0.5
3,087,532	-				+1.2
3,087,876	-				-2.5
3,087,886	+				+0.0
3,087,887	-				-0.1
3,087,901	+				-0.7
3,087,901	+				-0.1
3,088,045	+				+0.3
3,088,045	+				-0.2
3,088,046	-				-2.0
3,088,046	-				-0.9
3,088,281	-				-2.5
3,088,330	+				-1.3
3,088,331	-				+0.9
3,088,331	-				-0.8
3,088,374	+		PFR28_02613	0.12	-1.3
3,088,374	+		PFR28_02613	0.12	-1.6
3,088,374	+		PFR28_02613	0.12	-1.1
3,088,704	+		PFR28_02613	0.26	-0.9
3,088,745	+		PFR28_02613	0.28	-1.5
3,088,745	+		PFR28_02613	0.28	-1.6
3,088,746	-		PFR28_02613	0.28	-0.6
3,088,746	-		PFR28_02613	0.28	-2.4
3,088,780	-		PFR28_02613	0.30	-2.1
3,088,780	-		PFR28_02613	0.30	-1.1
3,088,793	+		PFR28_02613	0.30	-3.2
3,088,793	+		PFR28_02613	0.30	-3.8
3,088,793	+		PFR28_02613	0.30	-3.1
3,088,793	+		PFR28_02613	0.30	-2.2
3,088,793	+		PFR28_02613	0.30	-0.5
3,088,793	+		PFR28_02613	0.30	-3.2
3,088,794	-		PFR28_02613	0.30	-1.0
3,088,794	-		PFR28_02613	0.30	-1.3
3,088,794	-		PFR28_02613	0.30	-2.0
3,088,794	-		PFR28_02613	0.30	-3.6
3,089,080	-		PFR28_02613	0.43	-1.1
3,089,080	-		PFR28_02613	0.43	-1.0
3,089,201	+		PFR28_02613	0.48	-2.8
3,089,201	+		PFR28_02613	0.48	-0.1
3,089,201	+		PFR28_02613	0.48	-0.5
3,089,202	-		PFR28_02613	0.48	-1.9
3,089,202	-		PFR28_02613	0.48	-4.1
3,089,202	-		PFR28_02613	0.48	-3.5
3,089,202	-		PFR28_02613	0.48	-4.5
3,089,588	+		PFR28_02613	0.65	-1.7
3,089,627	+		PFR28_02613	0.67	-3.7
3,089,628	-		PFR28_02613	0.67	-4.5
3,089,849	+		PFR28_02613	0.77	-2.7
3,089,849	+		PFR28_02613	0.77	+0.5
3,089,849	+		PFR28_02613	0.77	+0.3
3,089,849	+		PFR28_02613	0.77	-3.7
3,089,850	-		PFR28_02613	0.77	-1.7
3,089,850	-		PFR28_02613	0.77	-0.9
3,089,850	-		PFR28_02613	0.77	-2.1
3,089,850	-		PFR28_02613	0.77	-3.3
3,089,850	-		PFR28_02613	0.77	-1.3
3,089,904	+		PFR28_02613	0.79	-1.4
3,089,904	+		PFR28_02613	0.79	-0.9
3,089,905	-		PFR28_02613	0.79	-1.6
3,089,966	+		PFR28_02613	0.82	-2.0
3,089,966	+		PFR28_02613	0.82	+0.5
3,089,966	+		PFR28_02613	0.82	-3.7
3,089,966	+		PFR28_02613	0.82	-4.4
3,089,966	+		PFR28_02613	0.82	-2.9
3,089,967	-		PFR28_02613	0.82	-0.5
3,089,967	-		PFR28_02613	0.82	-3.2
3,089,967	-		PFR28_02613	0.82	-2.3
3,089,967	-		PFR28_02613	0.82	-0.1
3,089,967	-		PFR28_02613	0.82	-1.6
3,089,967	-		PFR28_02613	0.82	-0.3
3,089,967	-		PFR28_02613	0.82	-3.3
3,089,982	+		PFR28_02613	0.83	-3.1
3,089,983	-		PFR28_02613	0.83	-1.2
3,090,091	+		PFR28_02613	0.87	-0.3
3,090,091	+		PFR28_02613	0.87	-2.3
3,090,091	+		PFR28_02613	0.87	-2.2
3,090,091	+		PFR28_02613	0.87	-0.7
3,090,091	+		PFR28_02613	0.87	+0.7
3,090,091	+		PFR28_02613	0.87	+0.2
3,090,091	+		PFR28_02613	0.87	-1.6
3,090,091	+		PFR28_02613	0.87	-3.7
3,090,092	-		PFR28_02613	0.87	-0.4
3,090,092	-		PFR28_02613	0.87	-2.4
3,090,092	-		PFR28_02613	0.87	-0.3
3,090,092	-		PFR28_02613	0.87	-3.7
3,090,092	-		PFR28_02613	0.87	+1.5
3,090,092	-		PFR28_02613	0.87	-1.0
3,090,092	-		PFR28_02613	0.87	-2.2
3,090,092	-		PFR28_02613	0.87	-1.1
3,090,092	-		PFR28_02613	0.87	+0.0
3,090,274	+				-1.3
3,090,371	-				-0.4
3,090,371	-				-1.2
3,090,388	+				-0.9
3,090,388	+				+0.3
3,090,388	+				-3.0
3,090,389	-				-0.3
3,090,389	-				-0.9
3,090,433	-		PFR28_02614	0.11	+0.4
3,090,433	-		PFR28_02614	0.11	-0.2
3,090,458	-		PFR28_02614	0.22	-0.1
3,090,513	+		PFR28_02614	0.44	-2.3
3,090,513	+		PFR28_02614	0.44	-1.7
3,090,513	+		PFR28_02614	0.44	-2.5
3,090,514	-		PFR28_02614	0.44	-2.6
3,090,530	+		PFR28_02614	0.51	-0.3
3,090,530	+		PFR28_02614	0.51	-0.5
3,090,530	+		PFR28_02614	0.51	+0.9
3,090,531	-		PFR28_02614	0.51	-1.4
3,090,531	-		PFR28_02614	0.51	+0.6
3,090,531	-		PFR28_02614	0.51	+0.1
3,090,569	+		PFR28_02614	0.67	-0.1
3,090,570	-		PFR28_02614	0.67	+0.3
3,090,570	-		PFR28_02614	0.67	-1.5
3,090,570	-		PFR28_02614	0.67	-0.6
3,090,619	+		PFR28_02614	0.87	-0.5
3,090,620	-		PFR28_02614	0.87	-1.2
3,090,620	-		PFR28_02614	0.87	+0.8
3,090,620	-		PFR28_02614	0.87	-1.0
3,090,646	+				-1.7
3,090,646	+				-3.3
3,090,646	+				-0.2
3,090,646	+				-0.7
3,090,646	+				-0.9
3,090,647	-				-1.5
3,090,647	-				+1.1
3,090,647	-				-1.9
3,090,647	-				-2.8
3,090,647	-				-1.3
3,090,647	-				+0.8
3,090,647	-				-0.5
3,090,741	+				+1.6
3,090,742	-				+0.5
3,090,742	-				-0.5
3,090,785	+				+0.9
3,090,785	+				-0.7
3,090,785	+				-1.3
3,090,786	-				+0.2
3,090,796	+				+0.9
3,090,796	+				+0.0
3,090,796	+				-3.3
3,090,796	+				+0.5
3,090,797	-				-1.5
3,090,797	-				+0.3
3,090,801	+				-2.6
3,090,801	+				-0.0
3,090,801	+				-2.2
3,090,802	-				+0.4
3,090,871	-				-0.7
3,090,871	-				-0.7
3,090,871	-				+0.2
3,090,897	-				-1.3
3,090,932	+				-2.9
3,090,932	+				-1.7
3,090,932	+				-1.1
3,090,932	+				+0.0
3,090,933	-				+0.3
3,090,933	-				-0.9
3,090,955	+				-0.1
3,090,955	+				+0.3
3,090,955	+				-0.8
3,090,955	+				+0.0
3,090,955	+				+0.2
3,090,955	+				-2.0
3,090,955	+				-0.7
3,090,956	-				-0.1
3,090,956	-				+1.2
3,090,956	-				+0.2
3,090,986	+				+0.0
3,090,987	-				-1.7
3,090,993	+				+0.3
3,090,993	+				-2.5
3,090,994	-				+0.6
3,090,994	-				+0.7
3,091,006	-				-1.4
3,091,110	+		PFR28_02615	0.43	-1.8
3,091,111	-		PFR28_02615	0.44	+0.0
3,091,120	+		PFR28_02615	0.47	+0.5
3,091,120	+		PFR28_02615	0.47	-1.1
3,091,120	+		PFR28_02615	0.47	-0.9
3,091,120	+		PFR28_02615	0.47	-2.0
3,091,120	+		PFR28_02615	0.47	+0.8
3,091,121	-		PFR28_02615	0.48	-0.4
3,091,121	-		PFR28_02615	0.48	-0.5
3,091,121	-		PFR28_02615	0.48	-0.8
3,091,121	-		PFR28_02615	0.48	+1.6
3,091,121	-		PFR28_02615	0.48	+3.0
3,091,121	-		PFR28_02615	0.48	+0.9
3,091,149	+		PFR28_02615	0.58	-2.8
3,091,149	+		PFR28_02615	0.58	+1.4
3,091,150	-		PFR28_02615	0.58	-3.1
3,091,155	+		PFR28_02615	0.60	+0.2
3,091,195	-		PFR28_02615	0.75	-0.9
3,091,195	-		PFR28_02615	0.75	+0.6
3,091,320	-				+0.0
3,091,332	+				-0.1
3,091,333	-				-0.3
3,091,333	-				+0.9
3,091,333	-				+0.4