Strain Fitness in Pseudomonas sp. RS175 around PFR28_01265

Experiment: Choline (C) 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Choline (C) 10 mM
1,378,803	+		PFR28_01264	0.12	+0.1
1,378,935	+		PFR28_01264	0.26	-1.1
1,378,935	+		PFR28_01264	0.26	+0.2
1,378,935	+		PFR28_01264	0.26	-0.5
1,378,935	+		PFR28_01264	0.26	+0.6
1,378,936	-		PFR28_01264	0.26	+1.3
1,378,936	-		PFR28_01264	0.26	+0.1
1,378,936	-		PFR28_01264	0.26	-0.4
1,378,936	-		PFR28_01264	0.26	-0.2
1,378,998	+		PFR28_01264	0.33	+1.1
1,378,998	+		PFR28_01264	0.33	+1.4
1,378,998	+		PFR28_01264	0.33	-1.3
1,378,999	-		PFR28_01264	0.33	+0.5
1,378,999	-		PFR28_01264	0.33	+0.8
1,379,026	+		PFR28_01264	0.36	-2.8
1,379,026	+		PFR28_01264	0.36	+0.0
1,379,026	+		PFR28_01264	0.36	-1.1
1,379,027	-		PFR28_01264	0.36	+1.3
1,379,027	-		PFR28_01264	0.36	-0.9
1,379,049	+		PFR28_01264	0.38	+0.7
1,379,049	+		PFR28_01264	0.38	-1.3
1,379,112	+		PFR28_01264	0.45	+0.9
1,379,112	+		PFR28_01264	0.45	-0.1
1,379,112	+		PFR28_01264	0.45	+0.4
1,379,112	+		PFR28_01264	0.45	+0.1
1,379,112	+		PFR28_01264	0.45	-0.1
1,379,112	+		PFR28_01264	0.45	+2.5
1,379,112	+		PFR28_01264	0.45	-1.0
1,379,112	+		PFR28_01264	0.45	-1.6
1,379,112	+		PFR28_01264	0.45	-0.4
1,379,113	-		PFR28_01264	0.45	-0.6
1,379,113	-		PFR28_01264	0.45	+0.7
1,379,113	-		PFR28_01264	0.45	-0.8
1,379,113	-		PFR28_01264	0.45	+0.9
1,379,329	-		PFR28_01264	0.68	+0.5
1,379,571	+				+0.2
1,379,571	+				-0.3
1,379,571	+				+0.5
1,379,572	-				-0.0
1,379,687	+				-0.2
1,379,687	+				-0.2
1,379,689	+				-1.7
1,379,705	+				+1.8
1,379,709	-				-0.5
1,379,727	-				+1.0
1,379,749	+				-0.3
1,379,749	+				+0.1
1,379,749	+				-2.2
1,379,750	-				+0.9
1,379,750	-				-1.3
1,379,750	-				-2.6
1,379,768	+				-1.0
1,379,768	+				-1.6
1,379,768	+				+0.6
1,379,769	-				-1.2
1,379,769	-				-2.1
1,379,774	-				-0.3
1,379,865	+				-2.8
1,379,865	+				-1.5
1,379,865	+				-2.8
1,379,865	+				-1.3
1,379,865	+				+0.5
1,379,866	-				-0.5
1,379,866	-				-0.1
1,379,866	-				-2.3
1,380,031	-		PFR28_01265	0.19	-1.3
1,380,508	-		PFR28_01265	0.58	-0.0
1,380,756	+		PFR28_01265	0.78	-1.7
1,380,756	+		PFR28_01265	0.78	-3.7
1,380,756	+		PFR28_01265	0.78	-1.2
1,380,757	-		PFR28_01265	0.78	-0.3
1,380,757	-		PFR28_01265	0.78	-2.0
1,380,757	-		PFR28_01265	0.78	-1.0
1,380,757	-		PFR28_01265	0.78	+0.1
1,380,757	-		PFR28_01265	0.78	-2.5
1,380,757	-		PFR28_01265	0.78	-1.3
1,380,757	-		PFR28_01265	0.78	-2.9
1,380,757	-		PFR28_01265	0.78	+0.0
1,380,784	+		PFR28_01265	0.80	-3.2
1,380,903	+		PFR28_01265	0.90	-2.9
1,380,903	+		PFR28_01265	0.90	-2.3
1,380,903	+		PFR28_01265	0.90	-0.5
1,380,903	+		PFR28_01265	0.90	-0.3
1,380,903	+		PFR28_01265	0.90	-1.9
1,380,903	+		PFR28_01265	0.90	-1.4
1,380,903	+		PFR28_01265	0.90	-2.6
1,380,903	+		PFR28_01265	0.90	-1.9
1,380,904	-		PFR28_01265	0.90	-3.5
1,380,904	-		PFR28_01265	0.90	+0.5
1,380,904	-		PFR28_01265	0.90	-0.5
1,380,904	-		PFR28_01265	0.90	+0.1
1,380,904	-		PFR28_01265	0.90	-0.9
1,380,904	-		PFR28_01265	0.90	-2.9
1,380,904	-		PFR28_01265	0.90	-2.6
1,380,904	-		PFR28_01265	0.90	+1.5
1,380,909	+				+1.0
1,380,909	+				-1.6
1,380,909	+				-0.7
1,380,909	+				-1.7
1,380,909	+				-0.1
1,380,909	+				-1.0
1,380,909	+				-0.4
1,380,909	+				-2.5
1,380,910	-				-0.6
1,380,910	-				+0.6
1,380,910	-				-0.9
1,380,910	-				-0.2
1,380,910	-				+0.8
1,380,910	-				-0.3
1,380,993	+				-0.9
1,380,993	+				+0.7
1,380,994	-				-1.2
1,380,994	-				+0.5
1,380,994	-				-3.3
1,380,994	-				-0.2
1,381,108	+				+0.3
1,381,108	+				+1.4
1,381,108	+				+0.1
1,381,108	+				-0.1
1,381,109	-				+1.6
1,381,109	-				-1.6
1,381,109	-				+0.1
1,381,205	+				-1.3
1,381,205	+				+1.0
1,381,205	+				+0.3
1,381,205	+				-1.4
1,381,205	+				-0.9
1,381,205	+				-1.7
1,381,206	-				+1.1
1,381,206	-				+0.2
1,381,206	-				+0.2
1,381,206	-				+1.7
1,381,206	-				+0.1
1,381,206	-				+0.7
1,381,206	-				-2.1
1,381,273	+				+1.2
1,381,273	+				+2.1
1,381,273	+				+1.2
1,381,273	+				-0.1
1,381,273	+				-3.4
1,381,273	+				-0.7
1,381,273	+				+0.2
1,381,273	+				-1.6
1,381,274	-				+1.5
1,381,274	-				-1.9
1,381,274	-				+0.5
1,381,274	-				+1.1
1,381,274	-				+0.5
1,381,274	-				+1.5
1,381,274	-				+0.1
1,381,274	-				-0.5
1,381,292	+				+0.6
1,381,292	+				-1.5
1,381,293	-				+0.8
1,381,293	-				-1.4
1,381,294	+				+0.0
1,381,294	+				-0.5
1,381,294	+				+1.3
1,381,294	+				-1.7
1,381,294	+				+0.4
1,381,294	+				-0.9
1,381,294	+				+1.3
1,381,295	-				+0.4
1,381,295	-				+1.1
1,381,295	-				+0.7
1,381,295	-				+1.7
1,381,295	-				-0.4
1,381,295	-				+1.6
1,381,295	-				-0.6
1,381,295	-				+0.6
1,381,312	+				-1.1
1,381,312	+				+0.0
1,381,312	+				+0.6
1,381,312	+				-0.5
1,381,313	-				-2.0
1,381,387	+		PFR28_01266	0.15	+1.2
1,381,387	+		PFR28_01266	0.15	-0.3
1,381,388	-		PFR28_01266	0.15	-1.3
1,381,388	-		PFR28_01266	0.15	+0.8
1,381,388	-		PFR28_01266	0.15	-0.7
1,381,388	-		PFR28_01266	0.15	-1.7
1,381,411	+		PFR28_01266	0.18	+0.5
1,381,412	-		PFR28_01266	0.18	-1.5
1,381,489	+		PFR28_01266	0.27	-0.5
1,381,489	+		PFR28_01266	0.27	-2.2
1,381,490	-		PFR28_01266	0.27	-1.5
1,381,490	-		PFR28_01266	0.27	+0.6
1,381,594	+		PFR28_01266	0.39	-1.5
1,381,594	+		PFR28_01266	0.39	-0.5
1,381,594	+		PFR28_01266	0.39	-1.0
1,381,595	-		PFR28_01266	0.39	+0.9
1,381,595	-		PFR28_01266	0.39	+0.2
1,381,847	-		PFR28_01266	0.68	-1.7
1,381,956	+		PFR28_01266	0.81	-1.0
1,381,956	+		PFR28_01266	0.81	+0.8
1,381,956	+		PFR28_01266	0.81	-0.1
1,381,956	+		PFR28_01266	0.81	+0.7
1,381,956	+		PFR28_01266	0.81	-0.8
1,381,956	+		PFR28_01266	0.81	+0.2
1,381,956	+		PFR28_01266	0.81	+0.1
1,381,957	-		PFR28_01266	0.81	-1.1
1,381,957	-		PFR28_01266	0.81	+0.2
1,381,957	-		PFR28_01266	0.81	-1.3
1,381,957	-		PFR28_01266	0.81	+1.5
1,381,992	+		PFR28_01266	0.85	+0.9
1,381,993	-		PFR28_01266	0.85	-0.5