Experiment: Choline (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00870 and PFR28_00871 overlap by 4 nucleotides PFR28_00871 and PFR28_00872 overlap by 4 nucleotides PFR28_00872 and PFR28_00873 overlap by 8 nucleotides PFR28_00873 and PFR28_00874 are separated by 14 nucleotides PFR28_00874 and PFR28_00875 are separated by 264 nucleotides
PFR28_00870: PFR28_00870 - Cytochrome c-type biogenesis protein CcmF, at 940,360 to 942,348
_00870
PFR28_00871: PFR28_00871 - Thiol:disulfide interchange protein DsbE, at 942,345 to 942,881
_00871
PFR28_00872: PFR28_00872 - Cytochrome c-type biogenesis protein CcmH, at 942,878 to 943,351
_00872
PFR28_00873: PFR28_00873 - hypothetical protein, at 943,344 to 944,552
_00873
PFR28_00874: PFR28_00874 - hypothetical protein, at 944,567 to 944,974
_00874
PFR28_00875: PFR28_00875 - Phosphoglycerol transferase I, at 945,239 to 947,332
_00875
Position (kb) 943
944
945 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 942.849 kb on + strand at 942.946 kb on + strand, within PFR28_00872 at 943.333 kb on + strand at 943.333 kb on + strand at 943.470 kb on + strand, within PFR28_00873 at 943.471 kb on - strand, within PFR28_00873 at 943.471 kb on - strand, within PFR28_00873 at 943.471 kb on - strand, within PFR28_00873 at 943.671 kb on + strand, within PFR28_00873 at 943.671 kb on + strand, within PFR28_00873 at 943.671 kb on + strand, within PFR28_00873 at 943.672 kb on - strand, within PFR28_00873 at 943.672 kb on - strand, within PFR28_00873 at 943.803 kb on + strand, within PFR28_00873 at 943.803 kb on + strand, within PFR28_00873 at 943.803 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.821 kb on + strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.822 kb on - strand, within PFR28_00873 at 943.926 kb on + strand, within PFR28_00873 at 943.926 kb on + strand, within PFR28_00873 at 944.108 kb on + strand, within PFR28_00873 at 944.263 kb on + strand, within PFR28_00873 at 944.263 kb on + strand, within PFR28_00873 at 944.263 kb on + strand, within PFR28_00873 at 944.264 kb on - strand, within PFR28_00873 at 944.264 kb on - strand, within PFR28_00873 at 944.264 kb on - strand, within PFR28_00873 at 944.264 kb on - strand, within PFR28_00873 at 944.441 kb on + strand at 944.585 kb on - strand at 944.585 kb on - strand at 944.585 kb on - strand at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.822 kb on + strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.823 kb on - strand, within PFR28_00874 at 944.853 kb on - strand, within PFR28_00874 at 944.853 kb on - strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.863 kb on + strand, within PFR28_00874 at 944.864 kb on - strand, within PFR28_00874 at 944.864 kb on - strand, within PFR28_00874 at 944.864 kb on - strand, within PFR28_00874 at 944.864 kb on - strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.867 kb on + strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.868 kb on - strand, within PFR28_00874 at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.934 kb on + strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 944.935 kb on - strand at 945.102 kb on + strand at 945.119 kb on + strand at 945.120 kb on - strand at 945.120 kb on - strand at 945.120 kb on - strand at 945.120 kb on - strand at 945.190 kb on + strand at 945.191 kb on - strand at 945.191 kb on - strand at 945.191 kb on - strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.223 kb on + strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.224 kb on - strand at 945.230 kb on + strand at 945.230 kb on + strand at 945.230 kb on + strand at 945.231 kb on - strand at 945.317 kb on + strand at 945.317 kb on + strand at 945.317 kb on + strand at 945.317 kb on + strand at 945.318 kb on - strand at 945.318 kb on - strand at 945.318 kb on - strand at 945.318 kb on - strand at 945.319 kb on + strand at 945.319 kb on + strand at 945.320 kb on - strand at 945.320 kb on - strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.383 kb on + strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.384 kb on - strand at 945.473 kb on + strand, within PFR28_00875 at 945.473 kb on + strand, within PFR28_00875 at 945.473 kb on + strand, within PFR28_00875 at 945.474 kb on - strand, within PFR28_00875 at 945.474 kb on - strand, within PFR28_00875 at 945.474 kb on - strand, within PFR28_00875
Per-strain Table
Position Strand Gene LocusTag Fraction Choline (C) 10 mM remove 942,849 + -3.0 942,946 + PFR28_00872 0.14 -2.4 943,333 + +0.4 943,333 + -0.3 943,470 + PFR28_00873 0.10 -2.8 943,471 - PFR28_00873 0.11 +0.3 943,471 - PFR28_00873 0.11 -4.1 943,471 - PFR28_00873 0.11 -1.6 943,671 + PFR28_00873 0.27 -2.8 943,671 + PFR28_00873 0.27 -3.0 943,671 + PFR28_00873 0.27 -1.7 943,672 - PFR28_00873 0.27 -3.3 943,672 - PFR28_00873 0.27 -2.0 943,803 + PFR28_00873 0.38 -2.5 943,803 + PFR28_00873 0.38 -0.0 943,803 + PFR28_00873 0.38 +0.4 943,821 + PFR28_00873 0.39 -3.9 943,821 + PFR28_00873 0.39 -2.8 943,821 + PFR28_00873 0.39 -2.5 943,821 + PFR28_00873 0.39 +0.4 943,821 + PFR28_00873 0.39 -0.4 943,821 + PFR28_00873 0.39 -1.7 943,821 + PFR28_00873 0.39 -2.4 943,822 - PFR28_00873 0.40 -2.3 943,822 - PFR28_00873 0.40 -2.3 943,822 - PFR28_00873 0.40 -4.4 943,822 - PFR28_00873 0.40 -3.3 943,822 - PFR28_00873 0.40 -3.7 943,822 - PFR28_00873 0.40 -1.5 943,822 - PFR28_00873 0.40 -3.7 943,926 + PFR28_00873 0.48 -2.1 943,926 + PFR28_00873 0.48 -2.0 944,108 + PFR28_00873 0.63 +0.7 944,263 + PFR28_00873 0.76 -0.3 944,263 + PFR28_00873 0.76 +2.0 944,263 + PFR28_00873 0.76 +0.8 944,264 - PFR28_00873 0.76 -1.0 944,264 - PFR28_00873 0.76 -0.7 944,264 - PFR28_00873 0.76 -1.5 944,264 - PFR28_00873 0.76 -0.9 944,441 + -1.3 944,585 - -1.2 944,585 - +0.2 944,585 - +0.6 944,822 + PFR28_00874 0.62 -0.5 944,822 + PFR28_00874 0.62 -1.0 944,822 + PFR28_00874 0.62 +0.7 944,822 + PFR28_00874 0.62 -0.0 944,822 + PFR28_00874 0.62 -3.1 944,822 + PFR28_00874 0.62 -0.5 944,822 + PFR28_00874 0.62 +0.5 944,822 + PFR28_00874 0.62 +1.8 944,822 + PFR28_00874 0.62 -0.2 944,823 - PFR28_00874 0.63 -0.7 944,823 - PFR28_00874 0.63 -0.0 944,823 - PFR28_00874 0.63 -0.2 944,823 - PFR28_00874 0.63 -0.1 944,823 - PFR28_00874 0.63 +0.3 944,823 - PFR28_00874 0.63 -0.5 944,823 - PFR28_00874 0.63 -2.5 944,823 - PFR28_00874 0.63 -0.3 944,823 - PFR28_00874 0.63 +0.1 944,853 - PFR28_00874 0.70 -0.3 944,853 - PFR28_00874 0.70 -1.1 944,863 + PFR28_00874 0.73 -0.5 944,863 + PFR28_00874 0.73 +0.2 944,863 + PFR28_00874 0.73 -0.7 944,863 + PFR28_00874 0.73 -0.1 944,863 + PFR28_00874 0.73 -0.8 944,863 + PFR28_00874 0.73 -1.1 944,863 + PFR28_00874 0.73 +0.4 944,864 - PFR28_00874 0.73 -3.5 944,864 - PFR28_00874 0.73 +0.8 944,864 - PFR28_00874 0.73 +1.5 944,864 - PFR28_00874 0.73 +1.4 944,867 + PFR28_00874 0.74 -1.0 944,867 + PFR28_00874 0.74 -1.8 944,867 + PFR28_00874 0.74 +0.4 944,867 + PFR28_00874 0.74 -0.4 944,867 + PFR28_00874 0.74 -1.1 944,867 + PFR28_00874 0.74 -0.3 944,867 + PFR28_00874 0.74 +0.4 944,867 + PFR28_00874 0.74 +0.4 944,868 - PFR28_00874 0.74 -1.5 944,868 - PFR28_00874 0.74 +0.3 944,868 - PFR28_00874 0.74 -1.4 944,868 - PFR28_00874 0.74 +0.8 944,868 - PFR28_00874 0.74 -0.8 944,868 - PFR28_00874 0.74 -0.2 944,868 - PFR28_00874 0.74 +0.5 944,868 - PFR28_00874 0.74 +0.8 944,868 - PFR28_00874 0.74 -0.8 944,868 - PFR28_00874 0.74 +0.2 944,868 - PFR28_00874 0.74 -0.7 944,868 - PFR28_00874 0.74 +0.4 944,868 - PFR28_00874 0.74 -1.3 944,868 - PFR28_00874 0.74 +0.2 944,868 - PFR28_00874 0.74 -0.3 944,934 + -1.0 944,934 + +2.5 944,934 + -1.2 944,934 + +0.1 944,934 + +1.3 944,934 + -2.5 944,934 + -0.0 944,934 + +0.4 944,934 + -1.8 944,934 + +0.4 944,935 - -4.3 944,935 - +0.1 944,935 - -1.5 944,935 - -2.2 944,935 - -1.8 944,935 - -0.9 944,935 - -0.3 944,935 - +0.5 944,935 - +0.1 945,102 + +0.0 945,119 + -0.0 945,120 - +0.5 945,120 - +0.3 945,120 - -0.7 945,120 - -2.5 945,190 + -2.2 945,191 - +0.4 945,191 - +0.4 945,191 - -1.2 945,223 + +0.9 945,223 + -0.1 945,223 + +0.4 945,223 + +1.1 945,223 + -0.2 945,223 + +0.4 945,223 + -0.2 945,223 + +1.6 945,223 + -1.7 945,224 - -1.2 945,224 - -0.0 945,224 - -2.6 945,224 - -1.9 945,224 - -0.7 945,224 - +0.7 945,230 + -0.5 945,230 + +0.2 945,230 + +1.7 945,231 - -1.5 945,317 + +1.5 945,317 + +1.1 945,317 + -3.1 945,317 + -0.1 945,318 - -0.8 945,318 - +0.8 945,318 - +0.5 945,318 - +0.2 945,319 + +0.6 945,319 + +0.1 945,320 - -0.8 945,320 - -4.5 945,383 + -0.7 945,383 + -0.0 945,383 + -1.3 945,383 + -0.3 945,383 + -0.4 945,383 + -0.8 945,383 + -0.2 945,383 + -1.7 945,383 + -0.2 945,384 - +1.0 945,384 - +0.8 945,384 - +0.7 945,384 - -0.5 945,384 - -0.0 945,384 - +0.0 945,384 - -0.7 945,384 - +0.6 945,384 - -0.3 945,384 - +1.1 945,384 - +1.2 945,473 + PFR28_00875 0.11 -0.7 945,473 + PFR28_00875 0.11 +0.2 945,473 + PFR28_00875 0.11 -0.4 945,474 - PFR28_00875 0.11 -0.3 945,474 - PFR28_00875 0.11 +0.2 945,474 - PFR28_00875 0.11 +0.4
Or see this region's nucleotide sequence