Experiment: Choline (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00419 and PFR28_00420 are separated by 107 nucleotides PFR28_00420 and PFR28_00421 are separated by 89 nucleotides
PFR28_00419: PFR28_00419 - HTH-type transcriptional regulator DmlR, at 460,840 to 461,736
_00419
PFR28_00420: PFR28_00420 - S-(hydroxymethyl)glutathione dehydrogenase, at 461,844 to 462,956
_00420
PFR28_00421: PFR28_00421 - S-formylglutathione hydrolase YeiG, at 463,046 to 463,900
_00421
Position (kb) 461
462
463 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 460.883 kb on + strand at 460.883 kb on + strand at 460.883 kb on + strand at 460.884 kb on - strand at 460.884 kb on - strand at 460.884 kb on - strand at 460.884 kb on - strand at 460.931 kb on + strand, within PFR28_00419 at 460.931 kb on + strand, within PFR28_00419 at 460.931 kb on + strand, within PFR28_00419 at 460.932 kb on - strand, within PFR28_00419 at 460.932 kb on - strand, within PFR28_00419 at 460.932 kb on - strand, within PFR28_00419 at 460.932 kb on - strand, within PFR28_00419 at 460.933 kb on + strand, within PFR28_00419 at 460.933 kb on + strand, within PFR28_00419 at 460.933 kb on + strand, within PFR28_00419 at 460.934 kb on - strand, within PFR28_00419 at 460.934 kb on - strand, within PFR28_00419 at 460.934 kb on - strand, within PFR28_00419 at 460.934 kb on - strand, within PFR28_00419 at 460.934 kb on - strand, within PFR28_00419 at 460.950 kb on + strand, within PFR28_00419 at 461.015 kb on + strand, within PFR28_00419 at 461.015 kb on + strand, within PFR28_00419 at 461.015 kb on + strand, within PFR28_00419 at 461.015 kb on + strand, within PFR28_00419 at 461.015 kb on + strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.016 kb on - strand, within PFR28_00419 at 461.019 kb on - strand, within PFR28_00419 at 461.019 kb on - strand, within PFR28_00419 at 461.019 kb on - strand, within PFR28_00419 at 461.208 kb on - strand, within PFR28_00419 at 461.219 kb on + strand, within PFR28_00419 at 461.219 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.240 kb on + strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.241 kb on - strand, within PFR28_00419 at 461.426 kb on + strand, within PFR28_00419 at 461.582 kb on + strand, within PFR28_00419 at 461.744 kb on + strand at 461.752 kb on + strand at 461.784 kb on - strand at 461.838 kb on + strand at 461.838 kb on + strand at 461.838 kb on + strand at 461.839 kb on - strand at 461.839 kb on - strand at 461.839 kb on - strand at 461.979 kb on + strand, within PFR28_00420 at 461.979 kb on + strand, within PFR28_00420 at 462.108 kb on + strand, within PFR28_00420 at 462.108 kb on + strand, within PFR28_00420 at 462.108 kb on + strand, within PFR28_00420 at 462.108 kb on + strand, within PFR28_00420 at 462.140 kb on + strand, within PFR28_00420 at 462.225 kb on + strand, within PFR28_00420 at 462.249 kb on + strand, within PFR28_00420 at 462.249 kb on + strand, within PFR28_00420 at 462.249 kb on + strand, within PFR28_00420 at 462.249 kb on + strand, within PFR28_00420 at 462.249 kb on + strand, within PFR28_00420 at 462.250 kb on - strand, within PFR28_00420 at 462.250 kb on - strand, within PFR28_00420 at 462.250 kb on - strand, within PFR28_00420 at 462.250 kb on - strand, within PFR28_00420 at 462.250 kb on - strand, within PFR28_00420 at 462.250 kb on - strand, within PFR28_00420 at 462.250 kb on - strand, within PFR28_00420 at 462.276 kb on + strand, within PFR28_00420 at 462.277 kb on - strand, within PFR28_00420 at 462.277 kb on - strand, within PFR28_00420 at 462.822 kb on + strand, within PFR28_00420 at 462.822 kb on + strand, within PFR28_00420 at 462.823 kb on - strand, within PFR28_00420 at 462.823 kb on - strand, within PFR28_00420 at 462.860 kb on + strand at 462.860 kb on + strand at 462.861 kb on - strand at 462.875 kb on + strand at 462.875 kb on + strand at 462.875 kb on + strand at 462.875 kb on + strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.876 kb on - strand at 462.953 kb on - strand at 462.954 kb on + strand at 462.955 kb on - strand at 462.979 kb on + strand at 462.979 kb on + strand at 462.980 kb on - strand at 462.980 kb on - strand at 462.980 kb on - strand at 462.992 kb on + strand at 462.992 kb on + strand at 462.992 kb on + strand at 463.137 kb on + strand, within PFR28_00421 at 463.138 kb on - strand, within PFR28_00421 at 463.148 kb on + strand, within PFR28_00421 at 463.148 kb on + strand, within PFR28_00421 at 463.149 kb on - strand, within PFR28_00421 at 463.149 kb on - strand, within PFR28_00421 at 463.193 kb on + strand, within PFR28_00421 at 463.193 kb on + strand, within PFR28_00421 at 463.194 kb on - strand, within PFR28_00421 at 463.317 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.412 kb on + strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.413 kb on - strand, within PFR28_00421 at 463.418 kb on + strand, within PFR28_00421 at 463.418 kb on + strand, within PFR28_00421 at 463.418 kb on + strand, within PFR28_00421 at 463.419 kb on - strand, within PFR28_00421 at 463.419 kb on - strand, within PFR28_00421 at 463.419 kb on - strand, within PFR28_00421 at 463.544 kb on + strand, within PFR28_00421 at 463.814 kb on + strand, within PFR28_00421 at 463.814 kb on + strand, within PFR28_00421 at 463.815 kb on - strand at 463.826 kb on + strand at 463.826 kb on + strand at 463.826 kb on + strand at 463.826 kb on + strand at 463.826 kb on + strand at 463.826 kb on + strand at 463.826 kb on + strand at 463.827 kb on - strand at 463.827 kb on - strand at 463.827 kb on - strand at 463.827 kb on - strand at 463.827 kb on - strand at 463.827 kb on - strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.829 kb on + strand at 463.830 kb on - strand at 463.830 kb on - strand at 463.830 kb on - strand at 463.925 kb on + strand at 463.925 kb on + strand at 463.925 kb on + strand at 463.926 kb on - strand at 463.941 kb on + strand at 463.942 kb on - strand at 463.948 kb on - strand at 463.956 kb on + strand at 463.956 kb on + strand at 463.956 kb on + strand at 463.956 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline (C) 10 mM remove 460,883 + -0.4 460,883 + -2.1 460,883 + -0.4 460,884 - -1.4 460,884 - +0.1 460,884 - -1.2 460,884 - -0.9 460,931 + PFR28_00419 0.10 -0.4 460,931 + PFR28_00419 0.10 -1.2 460,931 + PFR28_00419 0.10 -1.1 460,932 - PFR28_00419 0.10 -0.5 460,932 - PFR28_00419 0.10 +0.3 460,932 - PFR28_00419 0.10 +0.5 460,932 - PFR28_00419 0.10 -1.9 460,933 + PFR28_00419 0.10 -0.6 460,933 + PFR28_00419 0.10 -3.1 460,933 + PFR28_00419 0.10 +0.6 460,934 - PFR28_00419 0.10 -2.1 460,934 - PFR28_00419 0.10 -2.2 460,934 - PFR28_00419 0.10 +0.5 460,934 - PFR28_00419 0.10 -0.2 460,934 - PFR28_00419 0.10 +1.5 460,950 + PFR28_00419 0.12 +0.6 461,015 + PFR28_00419 0.20 +1.5 461,015 + PFR28_00419 0.20 -2.6 461,015 + PFR28_00419 0.20 +0.7 461,015 + PFR28_00419 0.20 -2.2 461,015 + PFR28_00419 0.20 +0.8 461,016 - PFR28_00419 0.20 +0.3 461,016 - PFR28_00419 0.20 -0.9 461,016 - PFR28_00419 0.20 -1.1 461,016 - PFR28_00419 0.20 -2.6 461,016 - PFR28_00419 0.20 -1.8 461,016 - PFR28_00419 0.20 +1.2 461,016 - PFR28_00419 0.20 -0.2 461,016 - PFR28_00419 0.20 +0.3 461,016 - PFR28_00419 0.20 -1.9 461,019 - PFR28_00419 0.20 -3.3 461,019 - PFR28_00419 0.20 +1.2 461,019 - PFR28_00419 0.20 -0.5 461,208 - PFR28_00419 0.41 -2.1 461,219 + PFR28_00419 0.42 -1.2 461,219 + PFR28_00419 0.42 -1.1 461,240 + PFR28_00419 0.45 -1.2 461,240 + PFR28_00419 0.45 -1.5 461,240 + PFR28_00419 0.45 -3.3 461,240 + PFR28_00419 0.45 -0.7 461,240 + PFR28_00419 0.45 -1.2 461,240 + PFR28_00419 0.45 -2.3 461,240 + PFR28_00419 0.45 -1.4 461,240 + PFR28_00419 0.45 +0.2 461,240 + PFR28_00419 0.45 -0.6 461,240 + PFR28_00419 0.45 -1.3 461,240 + PFR28_00419 0.45 -0.1 461,240 + PFR28_00419 0.45 +0.6 461,240 + PFR28_00419 0.45 -2.7 461,240 + PFR28_00419 0.45 -1.6 461,240 + PFR28_00419 0.45 -0.6 461,240 + PFR28_00419 0.45 +0.1 461,241 - PFR28_00419 0.45 +0.3 461,241 - PFR28_00419 0.45 -0.7 461,241 - PFR28_00419 0.45 -0.9 461,241 - PFR28_00419 0.45 +0.2 461,241 - PFR28_00419 0.45 -3.3 461,241 - PFR28_00419 0.45 -0.2 461,241 - PFR28_00419 0.45 -1.3 461,241 - PFR28_00419 0.45 -0.7 461,241 - PFR28_00419 0.45 -0.3 461,426 + PFR28_00419 0.65 -0.9 461,582 + PFR28_00419 0.83 -2.3 461,744 + -0.7 461,752 + -0.4 461,784 - -1.7 461,838 + -0.3 461,838 + -0.1 461,838 + -0.5 461,839 - -1.6 461,839 - -1.7 461,839 - -1.4 461,979 + PFR28_00420 0.12 -3.7 461,979 + PFR28_00420 0.12 -1.1 462,108 + PFR28_00420 0.24 -0.4 462,108 + PFR28_00420 0.24 -1.4 462,108 + PFR28_00420 0.24 -2.7 462,108 + PFR28_00420 0.24 -0.4 462,140 + PFR28_00420 0.27 -1.0 462,225 + PFR28_00420 0.34 +0.3 462,249 + PFR28_00420 0.36 -1.1 462,249 + PFR28_00420 0.36 +0.6 462,249 + PFR28_00420 0.36 -2.4 462,249 + PFR28_00420 0.36 -0.4 462,249 + PFR28_00420 0.36 -0.7 462,250 - PFR28_00420 0.36 -0.9 462,250 - PFR28_00420 0.36 -1.4 462,250 - PFR28_00420 0.36 -1.4 462,250 - PFR28_00420 0.36 -1.0 462,250 - PFR28_00420 0.36 -1.1 462,250 - PFR28_00420 0.36 -0.8 462,250 - PFR28_00420 0.36 +0.0 462,276 + PFR28_00420 0.39 -0.3 462,277 - PFR28_00420 0.39 -2.5 462,277 - PFR28_00420 0.39 -2.3 462,822 + PFR28_00420 0.88 -1.0 462,822 + PFR28_00420 0.88 -1.7 462,823 - PFR28_00420 0.88 -1.6 462,823 - PFR28_00420 0.88 -1.1 462,860 + -0.7 462,860 + -0.1 462,861 - -3.8 462,875 + -1.4 462,875 + -1.8 462,875 + -1.1 462,875 + -2.9 462,876 - +0.6 462,876 - -0.0 462,876 - -2.8 462,876 - +0.9 462,876 - +0.6 462,876 - -1.2 462,876 - +0.1 462,876 - +0.8 462,876 - +0.7 462,876 - -2.0 462,953 - +1.3 462,954 + -0.1 462,955 - +1.0 462,979 + +0.6 462,979 + +0.6 462,980 - +1.5 462,980 - -1.1 462,980 - -2.9 462,992 + +1.1 462,992 + +0.7 462,992 + -1.2 463,137 + PFR28_00421 0.11 +0.2 463,138 - PFR28_00421 0.11 -3.0 463,148 + PFR28_00421 0.12 -3.5 463,148 + PFR28_00421 0.12 -1.9 463,149 - PFR28_00421 0.12 +0.7 463,149 - PFR28_00421 0.12 -0.8 463,193 + PFR28_00421 0.17 -1.9 463,193 + PFR28_00421 0.17 +0.3 463,194 - PFR28_00421 0.17 -1.7 463,317 + PFR28_00421 0.32 -0.1 463,412 + PFR28_00421 0.43 -0.7 463,412 + PFR28_00421 0.43 -0.8 463,412 + PFR28_00421 0.43 -2.4 463,412 + PFR28_00421 0.43 -0.7 463,412 + PFR28_00421 0.43 -0.4 463,412 + PFR28_00421 0.43 +0.3 463,412 + PFR28_00421 0.43 +1.1 463,412 + PFR28_00421 0.43 -1.0 463,412 + PFR28_00421 0.43 -0.3 463,412 + PFR28_00421 0.43 +0.4 463,412 + PFR28_00421 0.43 -0.7 463,412 + PFR28_00421 0.43 +0.1 463,412 + PFR28_00421 0.43 +0.3 463,412 + PFR28_00421 0.43 -1.8 463,413 - PFR28_00421 0.43 +1.8 463,413 - PFR28_00421 0.43 +0.6 463,413 - PFR28_00421 0.43 -1.6 463,413 - PFR28_00421 0.43 -1.7 463,413 - PFR28_00421 0.43 +0.5 463,413 - PFR28_00421 0.43 +0.1 463,413 - PFR28_00421 0.43 -0.7 463,413 - PFR28_00421 0.43 +0.9 463,413 - PFR28_00421 0.43 -0.5 463,413 - PFR28_00421 0.43 -2.5 463,413 - PFR28_00421 0.43 -0.9 463,413 - PFR28_00421 0.43 -2.7 463,418 + PFR28_00421 0.44 -0.1 463,418 + PFR28_00421 0.44 -3.0 463,418 + PFR28_00421 0.44 -3.6 463,419 - PFR28_00421 0.44 -0.0 463,419 - PFR28_00421 0.44 -0.7 463,419 - PFR28_00421 0.44 -0.2 463,544 + PFR28_00421 0.58 +0.3 463,814 + PFR28_00421 0.90 -1.2 463,814 + PFR28_00421 0.90 -0.3 463,815 - -0.8 463,826 + +1.5 463,826 + +1.1 463,826 + -0.1 463,826 + +1.0 463,826 + -3.1 463,826 + -0.2 463,826 + +0.3 463,827 - -1.5 463,827 - -0.6 463,827 - -2.2 463,827 - -0.6 463,827 - -3.3 463,827 - -1.1 463,829 + +0.9 463,829 + -4.4 463,829 + +0.1 463,829 + +1.6 463,829 + -0.2 463,829 + -0.5 463,829 + -0.7 463,829 + -0.1 463,829 + +1.1 463,829 + +0.4 463,830 - +0.6 463,830 - +0.4 463,830 - +0.5 463,925 + +0.3 463,925 + -2.4 463,925 + +1.2 463,926 - -0.1 463,941 + -0.4 463,942 - +1.1 463,948 - -0.2 463,956 + +1.3 463,956 + +0.4 463,956 + +0.5 463,956 + +1.1
Or see this region's nucleotide sequence