Experiment: Choline (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00402 and PFR28_00403 are separated by 52 nucleotides PFR28_00403 and PFR28_00404 are separated by 74 nucleotides
PFR28_00402: PFR28_00402 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase, at 439,243 to 440,433
_00402
PFR28_00403: PFR28_00403 - Regulator of sigma-E protease RseP, at 440,486 to 441,838
_00403
PFR28_00404: PFR28_00404 - Outer membrane protein assembly factor BamA, at 441,913 to 444,288
_00404
Position (kb) 440
441
442 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 440.442 kb on + strand at 440.442 kb on + strand at 440.443 kb on - strand at 440.443 kb on - strand at 440.443 kb on - strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.498 kb on + strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.499 kb on - strand at 440.500 kb on + strand at 440.500 kb on + strand at 440.500 kb on + strand at 440.500 kb on + strand at 440.500 kb on + strand at 440.501 kb on - strand at 440.501 kb on - strand at 440.501 kb on - strand at 440.501 kb on - strand at 440.501 kb on - strand at 440.501 kb on - strand at 440.501 kb on - strand at 440.501 kb on - strand at 440.628 kb on + strand, within PFR28_00403 at 440.628 kb on + strand, within PFR28_00403 at 440.629 kb on - strand, within PFR28_00403 at 440.629 kb on - strand, within PFR28_00403 at 440.629 kb on - strand, within PFR28_00403 at 440.688 kb on - strand, within PFR28_00403 at 440.883 kb on + strand, within PFR28_00403 at 440.883 kb on + strand, within PFR28_00403 at 440.884 kb on - strand, within PFR28_00403 at 441.282 kb on + strand, within PFR28_00403 at 441.282 kb on + strand, within PFR28_00403 at 441.282 kb on + strand, within PFR28_00403 at 441.282 kb on + strand, within PFR28_00403 at 441.283 kb on - strand, within PFR28_00403 at 441.387 kb on - strand, within PFR28_00403 at 441.484 kb on + strand, within PFR28_00403 at 441.485 kb on - strand, within PFR28_00403 at 441.485 kb on - strand, within PFR28_00403 at 441.485 kb on - strand, within PFR28_00403 at 441.638 kb on + strand, within PFR28_00403 at 441.710 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Choline (C) 10 mM remove 440,442 + -0.1 440,442 + -3.0 440,443 - +0.1 440,443 - -2.6 440,443 - -0.3 440,498 + -0.6 440,498 + -2.1 440,498 + +2.6 440,498 + -1.9 440,498 + +0.2 440,498 + -2.4 440,498 + +0.8 440,498 + +0.0 440,498 + -1.9 440,498 + +1.0 440,499 - -1.2 440,499 - -1.9 440,499 - -3.2 440,499 - -2.3 440,499 - +0.0 440,499 - +0.0 440,499 - -2.2 440,499 - +1.6 440,499 - -2.0 440,499 - -1.4 440,500 + -1.0 440,500 + -3.6 440,500 + -2.0 440,500 + -2.1 440,500 + -0.9 440,501 - -2.1 440,501 - -0.4 440,501 - -0.6 440,501 - -2.2 440,501 - +0.6 440,501 - -1.6 440,501 - +2.0 440,501 - -2.0 440,628 + PFR28_00403 0.10 -1.4 440,628 + PFR28_00403 0.10 -3.0 440,629 - PFR28_00403 0.11 +0.4 440,629 - PFR28_00403 0.11 -0.4 440,629 - PFR28_00403 0.11 -1.2 440,688 - PFR28_00403 0.15 -1.7 440,883 + PFR28_00403 0.29 -2.6 440,883 + PFR28_00403 0.29 -1.0 440,884 - PFR28_00403 0.29 +0.0 441,282 + PFR28_00403 0.59 -2.2 441,282 + PFR28_00403 0.59 +0.6 441,282 + PFR28_00403 0.59 -2.6 441,282 + PFR28_00403 0.59 -1.6 441,283 - PFR28_00403 0.59 -1.7 441,387 - PFR28_00403 0.67 -2.6 441,484 + PFR28_00403 0.74 -3.9 441,485 - PFR28_00403 0.74 -1.7 441,485 - PFR28_00403 0.74 -2.0 441,485 - PFR28_00403 0.74 -2.2 441,638 + PFR28_00403 0.85 -0.3 441,710 + +0.6
Or see this region's nucleotide sequence