Strain Fitness in Pseudomonas sp. RS175 around PFR28_00187

Experiment: Choline (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_00186 and PFR28_00187 are separated by 122 nucleotidesPFR28_00187 and PFR28_00188 are separated by 2 nucleotides PFR28_00186: PFR28_00186 - ATP phosphoribosyltransferase, at 208,284 to 208,919 _00186 PFR28_00187: PFR28_00187 - Histidinol dehydrogenase, at 209,042 to 210,379 _00187 PFR28_00188: PFR28_00188 - Histidinol-phosphate aminotransferase, at 210,382 to 211,434 _00188 Position (kb) 209 210 211Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 208.141 kb on + strandat 208.141 kb on + strandat 208.141 kb on + strandat 208.141 kb on + strandat 208.141 kb on + strandat 208.142 kb on - strandat 208.142 kb on - strandat 208.142 kb on - strandat 208.259 kb on + strandat 208.259 kb on + strandat 208.259 kb on + strandat 208.259 kb on + strandat 208.260 kb on - strandat 208.260 kb on - strandat 208.260 kb on - strandat 208.455 kb on + strand, within PFR28_00186at 208.455 kb on + strand, within PFR28_00186at 208.455 kb on + strand, within PFR28_00186at 208.455 kb on + strand, within PFR28_00186at 208.456 kb on - strand, within PFR28_00186at 208.456 kb on - strand, within PFR28_00186at 208.456 kb on - strand, within PFR28_00186at 208.512 kb on + strand, within PFR28_00186at 208.650 kb on + strand, within PFR28_00186at 208.653 kb on + strand, within PFR28_00186at 208.654 kb on - strand, within PFR28_00186at 208.692 kb on + strand, within PFR28_00186at 208.692 kb on + strand, within PFR28_00186at 208.693 kb on - strand, within PFR28_00186at 208.962 kb on - strandat 208.962 kb on - strandat 208.999 kb on - strandat 208.999 kb on - strandat 208.999 kb on - strandat 209.027 kb on + strandat 209.027 kb on + strandat 209.027 kb on + strandat 209.028 kb on - strandat 209.028 kb on - strandat 209.042 kb on - strandat 209.351 kb on + strand, within PFR28_00187at 209.384 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.401 kb on + strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.402 kb on - strand, within PFR28_00187at 209.447 kb on + strand, within PFR28_00187at 209.447 kb on + strand, within PFR28_00187at 209.448 kb on - strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.705 kb on + strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.706 kb on - strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.784 kb on + strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.785 kb on - strand, within PFR28_00187at 209.922 kb on + strand, within PFR28_00187at 209.922 kb on + strand, within PFR28_00187at 209.922 kb on + strand, within PFR28_00187at 209.923 kb on - strand, within PFR28_00187at 209.923 kb on - strand, within PFR28_00187at 209.923 kb on - strand, within PFR28_00187at 209.956 kb on + strand, within PFR28_00187at 209.956 kb on + strand, within PFR28_00187at 209.956 kb on + strand, within PFR28_00187at 209.956 kb on + strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 209.957 kb on - strand, within PFR28_00187at 210.143 kb on + strand, within PFR28_00187at 210.165 kb on + strand, within PFR28_00187at 210.165 kb on + strand, within PFR28_00187at 210.165 kb on + strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.166 kb on - strand, within PFR28_00187at 210.172 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.212 kb on + strand, within PFR28_00187at 210.213 kb on - strand, within PFR28_00187at 210.213 kb on - strand, within PFR28_00187at 210.213 kb on - strand, within PFR28_00187at 210.335 kb on + strandat 210.388 kb on - strandat 210.388 kb on - strandat 210.424 kb on + strandat 210.424 kb on + strandat 210.596 kb on - strand, within PFR28_00188at 210.598 kb on + strand, within PFR28_00188at 210.598 kb on + strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.599 kb on - strand, within PFR28_00188at 210.620 kb on + strand, within PFR28_00188at 210.620 kb on + strand, within PFR28_00188at 210.621 kb on - strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.712 kb on + strand, within PFR28_00188at 210.713 kb on - strand, within PFR28_00188at 210.722 kb on - strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.730 kb on + strand, within PFR28_00188at 210.731 kb on - strand, within PFR28_00188at 210.731 kb on - strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.742 kb on + strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.743 kb on - strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.802 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.931 kb on + strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 210.932 kb on - strand, within PFR28_00188at 211.106 kb on - strand, within PFR28_00188at 211.162 kb on + strand, within PFR28_00188at 211.163 kb on - strand, within PFR28_00188

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Per-strain Table

Position Strand Gene LocusTag Fraction Choline (C) 10 mM
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208,141 + -1.8
208,141 + -0.3
208,141 + +1.8
208,141 + +0.1
208,141 + -0.4
208,142 - -1.8
208,142 - -1.8
208,142 - -1.4
208,259 + -3.4
208,259 + +0.4
208,259 + -1.2
208,259 + -0.8
208,260 - -4.2
208,260 - -0.2
208,260 - -4.4
208,455 + PFR28_00186 0.27 -3.5
208,455 + PFR28_00186 0.27 -2.8
208,455 + PFR28_00186 0.27 -1.8
208,455 + PFR28_00186 0.27 -4.5
208,456 - PFR28_00186 0.27 -4.2
208,456 - PFR28_00186 0.27 -2.0
208,456 - PFR28_00186 0.27 -1.3
208,512 + PFR28_00186 0.36 -1.8
208,650 + PFR28_00186 0.58 +0.3
208,653 + PFR28_00186 0.58 -3.8
208,654 - PFR28_00186 0.58 -1.3
208,692 + PFR28_00186 0.64 -3.2
208,692 + PFR28_00186 0.64 -3.0
208,693 - PFR28_00186 0.64 -1.5
208,962 - -2.1
208,962 - -4.0
208,999 - -0.8
208,999 - -3.9
208,999 - -3.1
209,027 + -0.9
209,027 + -0.8
209,027 + -0.7
209,028 - -2.8
209,028 - -3.6
209,042 - -4.3
209,351 + PFR28_00187 0.23 -3.0
209,384 + PFR28_00187 0.26 -2.7
209,401 + PFR28_00187 0.27 -4.4
209,401 + PFR28_00187 0.27 -3.9
209,401 + PFR28_00187 0.27 -2.5
209,402 - PFR28_00187 0.27 -0.9
209,402 - PFR28_00187 0.27 +0.1
209,402 - PFR28_00187 0.27 -2.3
209,402 - PFR28_00187 0.27 -4.2
209,447 + PFR28_00187 0.30 -3.9
209,447 + PFR28_00187 0.30 -3.0
209,448 - PFR28_00187 0.30 -3.2
209,705 + PFR28_00187 0.50 -3.9
209,705 + PFR28_00187 0.50 -3.8
209,705 + PFR28_00187 0.50 -2.6
209,705 + PFR28_00187 0.50 -0.3
209,705 + PFR28_00187 0.50 -2.9
209,706 - PFR28_00187 0.50 +0.1
209,706 - PFR28_00187 0.50 -1.6
209,706 - PFR28_00187 0.50 -4.2
209,706 - PFR28_00187 0.50 -5.0
209,706 - PFR28_00187 0.50 -3.5
209,706 - PFR28_00187 0.50 -1.3
209,706 - PFR28_00187 0.50 -2.1
209,706 - PFR28_00187 0.50 -2.4
209,706 - PFR28_00187 0.50 -0.3
209,784 + PFR28_00187 0.55 -2.6
209,784 + PFR28_00187 0.55 -2.2
209,784 + PFR28_00187 0.55 -2.0
209,784 + PFR28_00187 0.55 -3.9
209,784 + PFR28_00187 0.55 -2.7
209,784 + PFR28_00187 0.55 -2.0
209,785 - PFR28_00187 0.56 -3.7
209,785 - PFR28_00187 0.56 -2.5
209,785 - PFR28_00187 0.56 -4.9
209,785 - PFR28_00187 0.56 -5.1
209,785 - PFR28_00187 0.56 -3.5
209,922 + PFR28_00187 0.66 -1.5
209,922 + PFR28_00187 0.66 -2.1
209,922 + PFR28_00187 0.66 -1.3
209,923 - PFR28_00187 0.66 -3.7
209,923 - PFR28_00187 0.66 -4.5
209,923 - PFR28_00187 0.66 -1.7
209,956 + PFR28_00187 0.68 -0.1
209,956 + PFR28_00187 0.68 -2.8
209,956 + PFR28_00187 0.68 -1.5
209,956 + PFR28_00187 0.68 -1.7
209,957 - PFR28_00187 0.68 -3.9
209,957 - PFR28_00187 0.68 -5.0
209,957 - PFR28_00187 0.68 -4.0
209,957 - PFR28_00187 0.68 -3.2
209,957 - PFR28_00187 0.68 -2.8
209,957 - PFR28_00187 0.68 -2.2
209,957 - PFR28_00187 0.68 -1.8
210,143 + PFR28_00187 0.82 -3.4
210,165 + PFR28_00187 0.84 -1.3
210,165 + PFR28_00187 0.84 -3.0
210,165 + PFR28_00187 0.84 -3.7
210,166 - PFR28_00187 0.84 -2.1
210,166 - PFR28_00187 0.84 -3.8
210,166 - PFR28_00187 0.84 -3.7
210,166 - PFR28_00187 0.84 -1.8
210,166 - PFR28_00187 0.84 -3.5
210,172 + PFR28_00187 0.84 -3.2
210,212 + PFR28_00187 0.87 -5.1
210,212 + PFR28_00187 0.87 -2.5
210,212 + PFR28_00187 0.87 -2.2
210,212 + PFR28_00187 0.87 -0.1
210,212 + PFR28_00187 0.87 -1.1
210,213 - PFR28_00187 0.88 -2.6
210,213 - PFR28_00187 0.88 -0.8
210,213 - PFR28_00187 0.88 -0.5
210,335 + -4.0
210,388 - -4.5
210,388 - -2.9
210,424 + -4.1
210,424 + -0.8
210,596 - PFR28_00188 0.20 -1.8
210,598 + PFR28_00188 0.21 -2.7
210,598 + PFR28_00188 0.21 -3.8
210,599 - PFR28_00188 0.21 -0.5
210,599 - PFR28_00188 0.21 -3.4
210,599 - PFR28_00188 0.21 +0.0
210,599 - PFR28_00188 0.21 -0.2
210,620 + PFR28_00188 0.23 -4.0
210,620 + PFR28_00188 0.23 -1.1
210,621 - PFR28_00188 0.23 -3.8
210,712 + PFR28_00188 0.31 -2.1
210,712 + PFR28_00188 0.31 -1.5
210,712 + PFR28_00188 0.31 -2.5
210,713 - PFR28_00188 0.31 -2.3
210,722 - PFR28_00188 0.32 -3.7
210,730 + PFR28_00188 0.33 +0.5
210,730 + PFR28_00188 0.33 -2.5
210,730 + PFR28_00188 0.33 -2.4
210,731 - PFR28_00188 0.33 -4.0
210,731 - PFR28_00188 0.33 -3.7
210,742 + PFR28_00188 0.34 -3.5
210,742 + PFR28_00188 0.34 +0.9
210,742 + PFR28_00188 0.34 -2.6
210,742 + PFR28_00188 0.34 -4.2
210,743 - PFR28_00188 0.34 -1.6
210,743 - PFR28_00188 0.34 -1.9
210,743 - PFR28_00188 0.34 -4.4
210,743 - PFR28_00188 0.34 -2.5
210,802 + PFR28_00188 0.40 -3.4
210,802 + PFR28_00188 0.40 -0.6
210,802 + PFR28_00188 0.40 -2.7
210,931 + PFR28_00188 0.52 -3.7
210,931 + PFR28_00188 0.52 -3.9
210,931 + PFR28_00188 0.52 -3.0
210,931 + PFR28_00188 0.52 -2.9
210,931 + PFR28_00188 0.52 -2.9
210,931 + PFR28_00188 0.52 -0.5
210,931 + PFR28_00188 0.52 -1.5
210,931 + PFR28_00188 0.52 -0.5
210,931 + PFR28_00188 0.52 -2.3
210,931 + PFR28_00188 0.52 -3.5
210,932 - PFR28_00188 0.52 +0.7
210,932 - PFR28_00188 0.52 -3.4
210,932 - PFR28_00188 0.52 -3.7
210,932 - PFR28_00188 0.52 -1.4
210,932 - PFR28_00188 0.52 -0.3
210,932 - PFR28_00188 0.52 -0.7
210,932 - PFR28_00188 0.52 -3.8
211,106 - PFR28_00188 0.69 -0.9
211,162 + PFR28_00188 0.74 -3.0
211,163 - PFR28_00188 0.74 +0.5

Or see this region's nucleotide sequence