Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3736 and Atu3737 are separated by 62 nucleotides Atu3737 and Atu3738 are separated by 316 nucleotides
Atu3736: Atu3736 - transketolase, at 815,073 to 817,055
Atu3736
Atu3737: Atu3737 - glyceraldehyde 3-phosphate dehydrogenase, at 817,118 to 818,128
Atu3737
Atu3738: Atu3738 - potassium/proton antiporter, at 818,445 to 820,310
Atu3738
Position (kb) 817
818
819 Strain fitness (log2 ratio) -2
-1
0
1
2 at 817.040 kb on + strand at 817.572 kb on - strand, within Atu3737 at 817.927 kb on + strand, within Atu3737 at 818.141 kb on + strand at 818.149 kb on - strand at 818.253 kb on + strand at 818.261 kb on + strand at 818.288 kb on - strand at 818.297 kb on - strand at 818.425 kb on + strand at 818.425 kb on + strand at 818.425 kb on + strand at 818.479 kb on - strand at 818.499 kb on + strand at 818.507 kb on - strand at 818.517 kb on - strand at 818.582 kb on - strand at 818.652 kb on - strand, within Atu3738 at 818.753 kb on - strand, within Atu3738 at 818.785 kb on - strand, within Atu3738 at 818.891 kb on - strand, within Atu3738 at 818.947 kb on + strand, within Atu3738 at 818.955 kb on - strand, within Atu3738 at 818.981 kb on + strand, within Atu3738 at 818.983 kb on - strand, within Atu3738 at 818.984 kb on - strand, within Atu3738 at 819.081 kb on + strand, within Atu3738 at 819.089 kb on - strand, within Atu3738
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 817,040 + -0.5 817,572 - Atu3737 0.45 +0.0 817,927 + Atu3737 0.80 -2.4 818,141 + +0.2 818,149 - -0.4 818,253 + -0.2 818,261 + +0.5 818,288 - -1.5 818,297 - -1.1 818,425 + -0.0 818,425 + -0.1 818,425 + -0.6 818,479 - -0.1 818,499 + -0.1 818,507 - +0.2 818,517 - +0.0 818,582 - +0.5 818,652 - Atu3738 0.11 -0.7 818,753 - Atu3738 0.17 -0.0 818,785 - Atu3738 0.18 -0.8 818,891 - Atu3738 0.24 +0.1 818,947 + Atu3738 0.27 +0.0 818,955 - Atu3738 0.27 +0.5 818,981 + Atu3738 0.29 -0.6 818,983 - Atu3738 0.29 +0.1 818,984 - Atu3738 0.29 +2.2 819,081 + Atu3738 0.34 -1.1 819,089 - Atu3738 0.35 +0.4
Or see this region's nucleotide sequence