Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3354 and Atu3355 are separated by 422 nucleotides Atu3355 and Atu3356 are separated by 160 nucleotides
Atu3354: Atu3354 - pyrroloquinoline-quinone-dependent quinate dehydrogenase, at 388,845 to 391,253
Atu3354
Atu3355: Atu3355 - LysR family transcriptional regulator, at 391,676 to 392,575
Atu3355
Atu3356: Atu3356 - malic enzyme, at 392,736 to 395,024
Atu3356
Position (kb) 391
392
393 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 390.752 kb on - strand, within Atu3354 at 390.752 kb on - strand, within Atu3354 at 390.762 kb on + strand, within Atu3354 at 390.808 kb on + strand, within Atu3354 at 390.815 kb on + strand, within Atu3354 at 390.878 kb on - strand, within Atu3354 at 390.959 kb on + strand, within Atu3354 at 390.959 kb on - strand, within Atu3354 at 391.038 kb on - strand at 391.138 kb on + strand at 391.188 kb on + strand at 391.239 kb on + strand at 391.309 kb on + strand at 391.317 kb on - strand at 391.406 kb on + strand at 391.408 kb on + strand at 391.414 kb on - strand at 391.472 kb on - strand at 391.490 kb on + strand at 391.573 kb on + strand at 391.639 kb on - strand at 391.737 kb on + strand at 391.767 kb on + strand, within Atu3355 at 391.775 kb on - strand, within Atu3355 at 391.775 kb on - strand, within Atu3355 at 391.777 kb on + strand, within Atu3355 at 391.807 kb on - strand, within Atu3355 at 391.878 kb on - strand, within Atu3355 at 392.024 kb on + strand, within Atu3355 at 392.034 kb on - strand, within Atu3355 at 392.048 kb on + strand, within Atu3355 at 392.162 kb on + strand, within Atu3355 at 392.180 kb on - strand, within Atu3355 at 392.192 kb on - strand, within Atu3355 at 392.194 kb on + strand, within Atu3355 at 392.194 kb on + strand, within Atu3355 at 392.370 kb on - strand, within Atu3355 at 392.370 kb on - strand, within Atu3355 at 392.370 kb on - strand, within Atu3355 at 392.456 kb on + strand, within Atu3355 at 392.464 kb on - strand, within Atu3355 at 392.464 kb on - strand, within Atu3355 at 392.466 kb on - strand, within Atu3355 at 392.487 kb on - strand at 392.497 kb on + strand at 392.497 kb on + strand at 392.505 kb on - strand at 392.648 kb on + strand at 392.658 kb on - strand at 392.772 kb on - strand at 392.813 kb on - strand at 392.813 kb on - strand at 392.826 kb on + strand at 392.890 kb on + strand at 392.890 kb on + strand at 393.022 kb on + strand, within Atu3356 at 393.022 kb on + strand, within Atu3356 at 393.030 kb on - strand, within Atu3356 at 393.046 kb on + strand, within Atu3356 at 393.108 kb on - strand, within Atu3356 at 393.139 kb on + strand, within Atu3356 at 393.139 kb on + strand, within Atu3356 at 393.147 kb on - strand, within Atu3356 at 393.151 kb on + strand, within Atu3356 at 393.174 kb on - strand, within Atu3356 at 393.184 kb on - strand, within Atu3356 at 393.184 kb on - strand, within Atu3356 at 393.184 kb on - strand, within Atu3356 at 393.184 kb on - strand, within Atu3356 at 393.287 kb on + strand, within Atu3356 at 393.295 kb on - strand, within Atu3356 at 393.335 kb on + strand, within Atu3356 at 393.370 kb on + strand, within Atu3356 at 393.378 kb on - strand, within Atu3356 at 393.380 kb on + strand, within Atu3356 at 393.380 kb on + strand, within Atu3356 at 393.380 kb on + strand, within Atu3356 at 393.380 kb on + strand, within Atu3356 at 393.388 kb on - strand, within Atu3356 at 393.388 kb on - strand, within Atu3356 at 393.474 kb on + strand, within Atu3356 at 393.529 kb on + strand, within Atu3356 at 393.529 kb on - strand, within Atu3356 at 393.537 kb on - strand, within Atu3356 at 393.554 kb on + strand, within Atu3356
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 390,752 - Atu3354 0.79 -0.1 390,752 - Atu3354 0.79 -0.4 390,762 + Atu3354 0.80 -0.3 390,808 + Atu3354 0.81 -0.3 390,815 + Atu3354 0.82 +0.3 390,878 - Atu3354 0.84 -0.3 390,959 + Atu3354 0.88 -0.6 390,959 - Atu3354 0.88 +0.7 391,038 - +0.7 391,138 + -0.1 391,188 + -0.1 391,239 + -1.4 391,309 + +0.6 391,317 - -0.2 391,406 + -0.1 391,408 + -0.0 391,414 - +0.2 391,472 - -0.1 391,490 + +0.4 391,573 + -0.5 391,639 - +0.8 391,737 + +0.9 391,767 + Atu3355 0.10 -0.1 391,775 - Atu3355 0.11 +0.9 391,775 - Atu3355 0.11 +0.8 391,777 + Atu3355 0.11 +0.7 391,807 - Atu3355 0.15 +0.4 391,878 - Atu3355 0.22 -0.5 392,024 + Atu3355 0.39 +0.1 392,034 - Atu3355 0.40 +0.2 392,048 + Atu3355 0.41 -1.5 392,162 + Atu3355 0.54 -0.9 392,180 - Atu3355 0.56 -0.0 392,192 - Atu3355 0.57 +0.3 392,194 + Atu3355 0.58 -0.0 392,194 + Atu3355 0.58 -0.1 392,370 - Atu3355 0.77 -0.1 392,370 - Atu3355 0.77 -0.0 392,370 - Atu3355 0.77 -0.4 392,456 + Atu3355 0.87 +0.9 392,464 - Atu3355 0.88 -0.6 392,464 - Atu3355 0.88 -0.2 392,466 - Atu3355 0.88 +0.9 392,487 - +0.7 392,497 + +0.5 392,497 + -0.2 392,505 - -0.1 392,648 + -1.2 392,658 - -0.8 392,772 - -0.1 392,813 - -1.0 392,813 - -1.9 392,826 + -1.2 392,890 + -0.1 392,890 + -1.7 393,022 + Atu3356 0.12 -0.9 393,022 + Atu3356 0.12 -1.0 393,030 - Atu3356 0.13 -2.4 393,046 + Atu3356 0.14 -1.2 393,108 - Atu3356 0.16 -0.5 393,139 + Atu3356 0.18 -1.4 393,139 + Atu3356 0.18 -1.7 393,147 - Atu3356 0.18 -1.6 393,151 + Atu3356 0.18 -2.3 393,174 - Atu3356 0.19 -1.2 393,184 - Atu3356 0.20 -1.0 393,184 - Atu3356 0.20 -1.4 393,184 - Atu3356 0.20 -1.7 393,184 - Atu3356 0.20 +0.3 393,287 + Atu3356 0.24 -2.0 393,295 - Atu3356 0.24 -1.6 393,335 + Atu3356 0.26 -1.2 393,370 + Atu3356 0.28 -2.0 393,378 - Atu3356 0.28 -1.2 393,380 + Atu3356 0.28 -1.7 393,380 + Atu3356 0.28 -2.3 393,380 + Atu3356 0.28 -1.6 393,380 + Atu3356 0.28 -0.9 393,388 - Atu3356 0.28 -1.9 393,388 - Atu3356 0.28 -2.2 393,474 + Atu3356 0.32 -1.7 393,529 + Atu3356 0.35 -2.8 393,529 - Atu3356 0.35 -2.3 393,537 - Atu3356 0.35 -1.7 393,554 + Atu3356 0.36 -1.7
Or see this region's nucleotide sequence