Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3288 and Atu3289 overlap by 14 nucleotides Atu3289 and Atu3290 overlap by 4 nucleotides Atu3290 and Atu3291 are separated by 216 nucleotides Atu3291 and Atu3292 are separated by 127 nucleotides
Atu3288: Atu3288 - hydroxyethylthiazole kinase, at 314,731 to 315,471
Atu3288
Atu3289: Atu3289 - thiamine-phosphate pyrophosphorylase, at 315,458 to 316,120
Atu3289
Atu3290: Atu3290 - phosphomethylpyrimidine kinase, at 316,117 to 316,914
Atu3290
Atu3291: Atu3291 - Lpr family transcriptional regulator, at 317,131 to 317,589
Atu3291
Atu3292: Atu3292 - alanine racemase, at 317,717 to 318,883
Atu3292
Position (kb) 316
317 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 315.244 kb on + strand, within Atu3288 at 315.254 kb on + strand, within Atu3288 at 315.278 kb on + strand, within Atu3288 at 315.323 kb on + strand, within Atu3288 at 315.344 kb on + strand, within Atu3288 at 315.345 kb on - strand, within Atu3288 at 315.352 kb on - strand, within Atu3288 at 315.366 kb on + strand, within Atu3288 at 315.467 kb on + strand at 315.475 kb on - strand at 315.503 kb on - strand at 315.670 kb on - strand, within Atu3289 at 315.793 kb on - strand, within Atu3289 at 315.817 kb on + strand, within Atu3289 at 315.925 kb on + strand, within Atu3289 at 316.129 kb on - strand at 316.183 kb on + strand at 316.193 kb on + strand at 316.370 kb on - strand, within Atu3290 at 316.412 kb on - strand, within Atu3290 at 316.598 kb on + strand, within Atu3290 at 316.613 kb on - strand, within Atu3290 at 316.632 kb on + strand, within Atu3290 at 316.632 kb on + strand, within Atu3290 at 316.632 kb on + strand, within Atu3290 at 316.640 kb on - strand, within Atu3290 at 316.640 kb on - strand, within Atu3290 at 316.662 kb on - strand, within Atu3290 at 316.667 kb on + strand, within Atu3290 at 316.688 kb on + strand, within Atu3290 at 316.795 kb on - strand, within Atu3290 at 316.843 kb on - strand at 316.913 kb on + strand at 316.937 kb on - strand at 316.945 kb on + strand at 316.972 kb on + strand at 317.093 kb on - strand at 317.106 kb on + strand at 317.419 kb on + strand, within Atu3291 at 317.427 kb on - strand, within Atu3291 at 317.429 kb on + strand, within Atu3291 at 317.432 kb on - strand, within Atu3291 at 317.432 kb on - strand, within Atu3291 at 317.432 kb on - strand, within Atu3291 at 317.459 kb on + strand, within Atu3291 at 317.514 kb on + strand, within Atu3291 at 317.548 kb on - strand at 317.548 kb on - strand at 317.862 kb on + strand, within Atu3292
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 315,244 + Atu3288 0.69 -1.9 315,254 + Atu3288 0.71 -1.1 315,278 + Atu3288 0.74 -0.8 315,323 + Atu3288 0.80 -1.4 315,344 + Atu3288 0.83 -1.7 315,345 - Atu3288 0.83 -1.8 315,352 - Atu3288 0.84 -1.2 315,366 + Atu3288 0.86 -1.1 315,467 + -1.3 315,475 - -0.7 315,503 - -2.0 315,670 - Atu3289 0.32 -1.8 315,793 - Atu3289 0.51 -1.2 315,817 + Atu3289 0.54 -2.2 315,925 + Atu3289 0.70 -2.6 316,129 - -3.9 316,183 + -1.9 316,193 + -1.5 316,370 - Atu3290 0.32 -1.7 316,412 - Atu3290 0.37 -3.1 316,598 + Atu3290 0.60 -1.8 316,613 - Atu3290 0.62 -2.5 316,632 + Atu3290 0.65 -2.5 316,632 + Atu3290 0.65 +1.3 316,632 + Atu3290 0.65 -2.5 316,640 - Atu3290 0.66 -3.6 316,640 - Atu3290 0.66 -1.7 316,662 - Atu3290 0.68 -2.4 316,667 + Atu3290 0.69 -1.8 316,688 + Atu3290 0.72 -2.1 316,795 - Atu3290 0.85 +0.3 316,843 - -1.6 316,913 + -0.1 316,937 - -0.7 316,945 + -0.7 316,972 + -0.3 317,093 - +0.1 317,106 + -0.0 317,419 + Atu3291 0.63 +0.9 317,427 - Atu3291 0.64 +1.3 317,429 + Atu3291 0.65 -0.4 317,432 - Atu3291 0.66 -0.5 317,432 - Atu3291 0.66 -0.4 317,432 - Atu3291 0.66 -1.3 317,459 + Atu3291 0.71 +0.3 317,514 + Atu3291 0.83 +0.3 317,548 - +0.2 317,548 - -0.7 317,862 + Atu3292 0.12 +0.1
Or see this region's nucleotide sequence