Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3241 and Atu3242 are separated by 17 nucleotides Atu3242 and Atu3243 are separated by 41 nucleotides Atu3243 and Atu3244 are separated by 310 nucleotides
Atu3241: Atu3241 - dehydrogenase, at 258,219 to 259,319
Atu3241
Atu3242: Atu3242 - hypothetical protein, at 259,337 to 259,978
Atu3242
Atu3243: Atu3243 - hypothetical protein, at 260,020 to 261,381
Atu3243
Atu3244: Atu3244 - diguanylate cyclase, at 261,692 to 264,010
Atu3244
Position (kb) 260
261
262 Strain fitness (log2 ratio) -2
-1
0
1
2 at 259.085 kb on + strand, within Atu3241 at 259.085 kb on + strand, within Atu3241 at 259.093 kb on - strand, within Atu3241 at 259.093 kb on - strand, within Atu3241 at 259.224 kb on + strand at 259.224 kb on + strand at 259.232 kb on - strand at 259.262 kb on + strand at 259.270 kb on + strand at 259.278 kb on - strand at 259.278 kb on - strand at 259.349 kb on + strand at 259.435 kb on + strand, within Atu3242 at 259.435 kb on + strand, within Atu3242 at 259.442 kb on + strand, within Atu3242 at 259.443 kb on - strand, within Atu3242 at 259.443 kb on - strand, within Atu3242 at 259.486 kb on - strand, within Atu3242 at 259.754 kb on - strand, within Atu3242 at 259.764 kb on - strand, within Atu3242 at 259.941 kb on - strand at 260.024 kb on - strand at 260.078 kb on + strand at 260.089 kb on - strand at 260.098 kb on - strand at 260.193 kb on - strand, within Atu3243 at 260.355 kb on - strand, within Atu3243 at 260.456 kb on - strand, within Atu3243 at 260.483 kb on + strand, within Atu3243 at 260.491 kb on - strand, within Atu3243 at 260.708 kb on + strand, within Atu3243 at 260.718 kb on - strand, within Atu3243 at 260.762 kb on + strand, within Atu3243 at 260.770 kb on - strand, within Atu3243 at 260.771 kb on - strand, within Atu3243 at 260.918 kb on - strand, within Atu3243 at 260.951 kb on + strand, within Atu3243 at 260.959 kb on - strand, within Atu3243 at 261.073 kb on + strand, within Atu3243 at 261.227 kb on + strand, within Atu3243 at 261.276 kb on - strand at 261.303 kb on + strand at 261.326 kb on - strand at 261.352 kb on - strand at 261.451 kb on + strand at 261.527 kb on + strand at 261.680 kb on + strand at 261.694 kb on + strand at 261.704 kb on + strand at 261.725 kb on - strand at 261.725 kb on - strand at 261.758 kb on - strand at 261.857 kb on - strand at 261.997 kb on + strand, within Atu3244 at 262.005 kb on - strand, within Atu3244 at 262.073 kb on + strand, within Atu3244 at 262.073 kb on + strand, within Atu3244 at 262.084 kb on + strand, within Atu3244 at 262.143 kb on + strand, within Atu3244 at 262.143 kb on + strand, within Atu3244 at 262.171 kb on - strand, within Atu3244 at 262.196 kb on - strand, within Atu3244 at 262.281 kb on - strand, within Atu3244 at 262.316 kb on - strand, within Atu3244
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 259,085 + Atu3241 0.79 +0.2 259,085 + Atu3241 0.79 +0.5 259,093 - Atu3241 0.79 +0.7 259,093 - Atu3241 0.79 +0.3 259,224 + +0.1 259,224 + -0.1 259,232 - -0.3 259,262 + +0.4 259,270 + +0.6 259,278 - -0.1 259,278 - +0.0 259,349 + +1.4 259,435 + Atu3242 0.15 +0.1 259,435 + Atu3242 0.15 +0.3 259,442 + Atu3242 0.16 -0.5 259,443 - Atu3242 0.17 +2.0 259,443 - Atu3242 0.17 +0.3 259,486 - Atu3242 0.23 -0.2 259,754 - Atu3242 0.65 -0.1 259,764 - Atu3242 0.67 +0.3 259,941 - +0.2 260,024 - +0.1 260,078 + -0.3 260,089 - +0.2 260,098 - +0.2 260,193 - Atu3243 0.13 +0.1 260,355 - Atu3243 0.25 -0.1 260,456 - Atu3243 0.32 -0.1 260,483 + Atu3243 0.34 -0.4 260,491 - Atu3243 0.35 -0.1 260,708 + Atu3243 0.51 -0.2 260,718 - Atu3243 0.51 -0.3 260,762 + Atu3243 0.54 +1.6 260,770 - Atu3243 0.55 +0.3 260,771 - Atu3243 0.55 -0.5 260,918 - Atu3243 0.66 -0.3 260,951 + Atu3243 0.68 +0.1 260,959 - Atu3243 0.69 -1.8 261,073 + Atu3243 0.77 -0.5 261,227 + Atu3243 0.89 +1.4 261,276 - -0.9 261,303 + -0.1 261,326 - -1.0 261,352 - +0.1 261,451 + -0.5 261,527 + -0.5 261,680 + -0.4 261,694 + +0.1 261,704 + +0.6 261,725 - +0.9 261,725 - -0.2 261,758 - -0.7 261,857 - -1.4 261,997 + Atu3244 0.13 -0.4 262,005 - Atu3244 0.13 +0.1 262,073 + Atu3244 0.16 -1.3 262,073 + Atu3244 0.16 +0.3 262,084 + Atu3244 0.17 -0.0 262,143 + Atu3244 0.19 +0.1 262,143 + Atu3244 0.19 +0.0 262,171 - Atu3244 0.21 -1.1 262,196 - Atu3244 0.22 +0.1 262,281 - Atu3244 0.25 -0.2 262,316 - Atu3244 0.27 -0.6
Or see this region's nucleotide sequence