Experiment: D-Galacturonic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0743 and Atu0744 are separated by 107 nucleotides Atu0744 and Atu0745 are separated by 42 nucleotides Atu0745 and Atu0746 are separated by 89 nucleotides
Atu0743: Atu0743 - hypothetical protein, at 741,430 to 742,224
Atu0743
Atu0744: Atu0744 - hypothetical protein, at 742,332 to 742,694
Atu0744
Atu0745: Atu0745 - 1-deoxy-D-xylulose-5-phosphate synthase, at 742,737 to 744,656
Atu0745
Atu0746: Atu0746 - hypothetical protein, at 744,746 to 745,669
Atu0746
Position (kb) 742
743
744
745 Strain fitness (log2 ratio) -2
-1
0
1
2 at 741.800 kb on + strand, within Atu0743 at 741.808 kb on - strand, within Atu0743 at 741.822 kb on + strand, within Atu0743 at 741.908 kb on - strand, within Atu0743 at 741.968 kb on - strand, within Atu0743 at 741.986 kb on + strand, within Atu0743 at 741.996 kb on + strand, within Atu0743 at 742.119 kb on - strand, within Atu0743 at 742.158 kb on + strand at 742.166 kb on - strand at 742.191 kb on + strand at 742.233 kb on + strand at 742.258 kb on + strand at 742.266 kb on - strand at 742.322 kb on - strand at 742.358 kb on + strand at 742.393 kb on - strand, within Atu0744 at 742.426 kb on - strand, within Atu0744 at 742.498 kb on - strand, within Atu0744 at 742.634 kb on + strand, within Atu0744 at 742.660 kb on - strand at 742.691 kb on - strand at 744.712 kb on - strand at 744.724 kb on - strand at 744.810 kb on + strand at 744.819 kb on + strand at 744.837 kb on - strand at 745.219 kb on - strand, within Atu0746 at 745.257 kb on - strand, within Atu0746 at 745.272 kb on + strand, within Atu0746 at 745.282 kb on + strand, within Atu0746 at 745.290 kb on - strand, within Atu0746 at 745.612 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galacturonic Acid (C) remove 741,800 + Atu0743 0.47 -0.1 741,808 - Atu0743 0.48 -0.5 741,822 + Atu0743 0.49 -0.0 741,908 - Atu0743 0.60 +0.3 741,968 - Atu0743 0.68 +0.2 741,986 + Atu0743 0.70 +0.9 741,996 + Atu0743 0.71 -1.9 742,119 - Atu0743 0.87 -0.6 742,158 + -0.7 742,166 - +0.3 742,191 + +0.1 742,233 + -0.6 742,258 + -0.2 742,266 - -0.1 742,322 - +1.3 742,358 + -0.3 742,393 - Atu0744 0.17 +0.2 742,426 - Atu0744 0.26 -0.7 742,498 - Atu0744 0.46 -1.0 742,634 + Atu0744 0.83 +0.3 742,660 - +2.2 742,691 - +0.4 744,712 - +0.2 744,724 - -0.4 744,810 + +0.7 744,819 + +0.1 744,837 - +0.5 745,219 - Atu0746 0.51 +0.3 745,257 - Atu0746 0.55 +0.9 745,272 + Atu0746 0.57 +0.7 745,282 + Atu0746 0.58 +0.4 745,290 - Atu0746 0.59 -0.2 745,612 - -0.2
Or see this region's nucleotide sequence