Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS23050 and AMB_RS23055 overlap by 4 nucleotides AMB_RS23055 and AMB_RS23060 are separated by 8 nucleotides AMB_RS23060 and AMB_RS23065 are separated by 90 nucleotides AMB_RS23065 and AMB_RS23070 overlap by 4 nucleotides
AMB_RS23050: AMB_RS23050 - quinone oxidoreductase, at 4,963,015 to 4,963,992
_RS23050
AMB_RS23055: AMB_RS23055 - methylated-DNA--protein-cysteine methyltransferase, at 4,963,989 to 4,964,441
_RS23055
AMB_RS23060: AMB_RS23060 - thioredoxin domain-containing protein, at 4,964,450 to 4,966,465
_RS23060
AMB_RS23065: AMB_RS23065 - hypothetical protein, at 4,966,556 to 4,966,810
_RS23065
AMB_RS23070: AMB_RS23070 - ferredoxin, at 4,966,807 to 4,967,148
_RS23070
Position (kb) 4964
4965
4966
4967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4963.586 kb on + strand, within AMB_RS23050 at 4963.587 kb on - strand, within AMB_RS23050 at 4963.604 kb on + strand, within AMB_RS23050 at 4963.604 kb on + strand, within AMB_RS23050 at 4963.709 kb on + strand, within AMB_RS23050 at 4963.709 kb on + strand, within AMB_RS23050 at 4963.709 kb on + strand, within AMB_RS23050 at 4963.710 kb on - strand, within AMB_RS23050 at 4963.733 kb on + strand, within AMB_RS23050 at 4963.733 kb on + strand, within AMB_RS23050 at 4963.733 kb on + strand, within AMB_RS23050 at 4963.835 kb on + strand, within AMB_RS23050 at 4963.865 kb on + strand, within AMB_RS23050 at 4963.865 kb on + strand, within AMB_RS23050 at 4963.865 kb on + strand, within AMB_RS23050 at 4963.865 kb on + strand, within AMB_RS23050 at 4963.865 kb on + strand, within AMB_RS23050 at 4963.866 kb on - strand, within AMB_RS23050 at 4964.056 kb on + strand, within AMB_RS23055 at 4964.182 kb on + strand, within AMB_RS23055 at 4964.183 kb on - strand, within AMB_RS23055 at 4964.296 kb on + strand, within AMB_RS23055 at 4964.297 kb on - strand, within AMB_RS23055 at 4964.451 kb on + strand at 4964.524 kb on + strand at 4964.524 kb on + strand at 4964.524 kb on + strand at 4964.524 kb on + strand at 4964.525 kb on - strand at 4964.526 kb on + strand at 4964.526 kb on + strand at 4964.526 kb on + strand at 4964.716 kb on + strand, within AMB_RS23060 at 4965.265 kb on + strand, within AMB_RS23060 at 4965.266 kb on - strand, within AMB_RS23060 at 4965.266 kb on - strand, within AMB_RS23060 at 4965.415 kb on - strand, within AMB_RS23060 at 4965.481 kb on + strand, within AMB_RS23060 at 4965.481 kb on + strand, within AMB_RS23060 at 4965.482 kb on - strand, within AMB_RS23060 at 4965.483 kb on + strand, within AMB_RS23060 at 4965.483 kb on + strand, within AMB_RS23060 at 4965.483 kb on + strand, within AMB_RS23060 at 4965.483 kb on + strand, within AMB_RS23060 at 4965.484 kb on - strand, within AMB_RS23060 at 4965.484 kb on - strand, within AMB_RS23060 at 4965.484 kb on - strand, within AMB_RS23060 at 4965.484 kb on - strand, within AMB_RS23060 at 4965.708 kb on + strand, within AMB_RS23060 at 4965.709 kb on - strand, within AMB_RS23060 at 4965.709 kb on - strand, within AMB_RS23060 at 4965.709 kb on - strand, within AMB_RS23060 at 4965.738 kb on + strand, within AMB_RS23060 at 4965.738 kb on + strand, within AMB_RS23060 at 4965.738 kb on + strand, within AMB_RS23060 at 4965.787 kb on + strand, within AMB_RS23060 at 4965.788 kb on - strand, within AMB_RS23060 at 4965.813 kb on + strand, within AMB_RS23060 at 4965.814 kb on - strand, within AMB_RS23060 at 4966.098 kb on + strand, within AMB_RS23060 at 4966.098 kb on + strand, within AMB_RS23060 at 4966.323 kb on + strand at 4966.429 kb on - strand at 4966.508 kb on + strand at 4966.515 kb on + strand at 4966.515 kb on + strand at 4966.515 kb on + strand at 4966.516 kb on - strand at 4966.516 kb on - strand at 4966.516 kb on - strand at 4966.516 kb on - strand at 4966.516 kb on - strand at 4966.564 kb on + strand at 4966.582 kb on + strand, within AMB_RS23065 at 4966.582 kb on + strand, within AMB_RS23065 at 4966.583 kb on - strand, within AMB_RS23065 at 4966.583 kb on - strand, within AMB_RS23065 at 4966.837 kb on + strand at 4966.973 kb on + strand, within AMB_RS23070 at 4966.973 kb on + strand, within AMB_RS23070 at 4966.973 kb on + strand, within AMB_RS23070 at 4967.032 kb on + strand, within AMB_RS23070 at 4967.032 kb on + strand, within AMB_RS23070 at 4967.051 kb on - strand, within AMB_RS23070 at 4967.098 kb on - strand, within AMB_RS23070 at 4967.098 kb on - strand, within AMB_RS23070 at 4967.098 kb on - strand, within AMB_RS23070
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 4,963,586 + AMB_RS23050 0.58 -0.2 4,963,587 - AMB_RS23050 0.58 +0.6 4,963,604 + AMB_RS23050 0.60 -0.2 4,963,604 + AMB_RS23050 0.60 -1.2 4,963,709 + AMB_RS23050 0.71 -0.8 4,963,709 + AMB_RS23050 0.71 +0.2 4,963,709 + AMB_RS23050 0.71 -2.2 4,963,710 - AMB_RS23050 0.71 +0.0 4,963,733 + AMB_RS23050 0.73 +0.2 4,963,733 + AMB_RS23050 0.73 -0.4 4,963,733 + AMB_RS23050 0.73 +0.1 4,963,835 + AMB_RS23050 0.84 +0.4 4,963,865 + AMB_RS23050 0.87 -0.6 4,963,865 + AMB_RS23050 0.87 -0.7 4,963,865 + AMB_RS23050 0.87 -0.2 4,963,865 + AMB_RS23050 0.87 +0.3 4,963,865 + AMB_RS23050 0.87 -0.2 4,963,866 - AMB_RS23050 0.87 +1.8 4,964,056 + AMB_RS23055 0.15 -1.0 4,964,182 + AMB_RS23055 0.43 -0.6 4,964,183 - AMB_RS23055 0.43 -2.0 4,964,296 + AMB_RS23055 0.68 -0.1 4,964,297 - AMB_RS23055 0.68 -0.2 4,964,451 + -0.0 4,964,524 + +0.2 4,964,524 + +1.4 4,964,524 + +0.0 4,964,524 + -2.4 4,964,525 - +0.4 4,964,526 + +0.1 4,964,526 + +1.4 4,964,526 + +1.8 4,964,716 + AMB_RS23060 0.13 +0.8 4,965,265 + AMB_RS23060 0.40 -1.9 4,965,266 - AMB_RS23060 0.40 +1.0 4,965,266 - AMB_RS23060 0.40 -1.4 4,965,415 - AMB_RS23060 0.48 -0.0 4,965,481 + AMB_RS23060 0.51 +0.8 4,965,481 + AMB_RS23060 0.51 -2.5 4,965,482 - AMB_RS23060 0.51 -0.1 4,965,483 + AMB_RS23060 0.51 -1.7 4,965,483 + AMB_RS23060 0.51 -1.2 4,965,483 + AMB_RS23060 0.51 -0.6 4,965,483 + AMB_RS23060 0.51 -0.3 4,965,484 - AMB_RS23060 0.51 +0.2 4,965,484 - AMB_RS23060 0.51 -2.2 4,965,484 - AMB_RS23060 0.51 -0.6 4,965,484 - AMB_RS23060 0.51 +0.1 4,965,708 + AMB_RS23060 0.62 -1.8 4,965,709 - AMB_RS23060 0.62 +0.7 4,965,709 - AMB_RS23060 0.62 -2.0 4,965,709 - AMB_RS23060 0.62 +0.8 4,965,738 + AMB_RS23060 0.64 +0.4 4,965,738 + AMB_RS23060 0.64 -0.3 4,965,738 + AMB_RS23060 0.64 +0.2 4,965,787 + AMB_RS23060 0.66 -0.3 4,965,788 - AMB_RS23060 0.66 -1.4 4,965,813 + AMB_RS23060 0.68 -2.1 4,965,814 - AMB_RS23060 0.68 -2.0 4,966,098 + AMB_RS23060 0.82 +0.3 4,966,098 + AMB_RS23060 0.82 +0.2 4,966,323 + -1.2 4,966,429 - -0.2 4,966,508 + +0.6 4,966,515 + +0.4 4,966,515 + +0.5 4,966,515 + +0.1 4,966,516 - -0.0 4,966,516 - -0.9 4,966,516 - -1.8 4,966,516 - +0.2 4,966,516 - -0.6 4,966,564 + +0.4 4,966,582 + AMB_RS23065 0.10 +0.1 4,966,582 + AMB_RS23065 0.10 -2.8 4,966,583 - AMB_RS23065 0.11 -0.8 4,966,583 - AMB_RS23065 0.11 +0.2 4,966,837 + -0.2 4,966,973 + AMB_RS23070 0.49 +1.2 4,966,973 + AMB_RS23070 0.49 -1.7 4,966,973 + AMB_RS23070 0.49 -1.4 4,967,032 + AMB_RS23070 0.66 +0.8 4,967,032 + AMB_RS23070 0.66 +0.5 4,967,051 - AMB_RS23070 0.71 -0.6 4,967,098 - AMB_RS23070 0.85 +1.2 4,967,098 - AMB_RS23070 0.85 -2.0 4,967,098 - AMB_RS23070 0.85 -3.2
Or see this region's nucleotide sequence