Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS22585

Experiment: 30_an_initial_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_2
4,872,612	+				+0.5
4,872,612	+				-0.2
4,872,612	+				-1.7
4,872,613	-				-1.8
4,872,613	-				-0.2
4,872,624	+				+0.7
4,872,624	+				-0.8
4,872,624	+				-0.1
4,872,624	+				+1.8
4,872,625	-				-2.8
4,872,625	-				-0.7
4,872,625	-				-0.2
4,872,625	-				+0.8
4,872,657	+				-0.5
4,872,657	+				+0.2
4,872,657	+				-1.2
4,872,657	+				+0.2
4,872,658	-				-0.6
4,872,658	-				-1.8
4,872,658	-				-1.2
4,872,658	-				-1.0
4,872,658	-				-0.2
4,872,658	-				-2.6
4,872,658	-				+0.8
4,872,780	+		AMB_RS22580	0.14	-0.7
4,872,781	-		AMB_RS22580	0.14	+0.8
4,872,792	+		AMB_RS22580	0.16	-1.6
4,872,793	-		AMB_RS22580	0.16	-1.3
4,872,793	-		AMB_RS22580	0.16	-1.6
4,872,793	-		AMB_RS22580	0.16	+0.2
4,872,873	+		AMB_RS22580	0.26	-1.6
4,872,873	+		AMB_RS22580	0.26	-1.2
4,872,873	+		AMB_RS22580	0.26	-1.6
4,872,873	+		AMB_RS22580	0.26	-1.0
4,872,874	-		AMB_RS22580	0.26	-2.0
4,872,874	-		AMB_RS22580	0.26	-1.4
4,872,874	-		AMB_RS22580	0.26	-0.6
4,872,874	-		AMB_RS22580	0.26	-1.9
4,872,874	-		AMB_RS22580	0.26	-0.4
4,872,894	+		AMB_RS22580	0.28	-1.8
4,872,894	+		AMB_RS22580	0.28	-1.0
4,872,894	+		AMB_RS22580	0.28	-0.2
4,872,894	+		AMB_RS22580	0.28	-1.0
4,872,894	+		AMB_RS22580	0.28	-1.7
4,872,894	+		AMB_RS22580	0.28	-0.6
4,872,895	-		AMB_RS22580	0.28	-1.4
4,872,895	-		AMB_RS22580	0.28	-0.9
4,872,895	-		AMB_RS22580	0.28	-1.2
4,872,895	-		AMB_RS22580	0.28	-0.3
4,872,895	-		AMB_RS22580	0.28	+0.8
4,872,895	-		AMB_RS22580	0.28	-0.6
4,872,933	+		AMB_RS22580	0.33	-1.6
4,872,934	-		AMB_RS22580	0.33	-0.6
4,873,186	+		AMB_RS22580	0.64	-1.0
4,873,187	-		AMB_RS22580	0.64	+1.8
4,873,187	-		AMB_RS22580	0.64	-1.8
4,873,224	+		AMB_RS22580	0.69	-0.5
4,873,224	+		AMB_RS22580	0.69	-0.8
4,873,224	+		AMB_RS22580	0.69	+0.2
4,873,224	+		AMB_RS22580	0.69	-2.2
4,873,225	-		AMB_RS22580	0.69	-0.8
4,873,225	-		AMB_RS22580	0.69	-1.2
4,873,225	-		AMB_RS22580	0.69	-0.8
4,873,225	-		AMB_RS22580	0.69	-1.2
4,873,225	-		AMB_RS22580	0.69	-0.9
4,873,225	-		AMB_RS22580	0.69	+0.8
4,873,226	+		AMB_RS22580	0.69	-4.0
4,873,226	+		AMB_RS22580	0.69	-1.8
4,873,226	+		AMB_RS22580	0.69	-2.4
4,873,226	+		AMB_RS22580	0.69	-1.4
4,873,227	-		AMB_RS22580	0.69	-0.7
4,873,227	-		AMB_RS22580	0.69	-1.8
4,873,227	-		AMB_RS22580	0.69	-2.5
4,873,496	-				+0.2
4,873,518	+				+0.5
4,873,553	-				-0.2
4,873,573	+				+0.2
4,873,573	+				-1.8
4,873,573	+				-2.3
4,873,573	+				-0.2
4,873,574	-				+1.8
4,873,574	-				+0.8
4,873,616	-				+0.0
4,873,647	+				-1.2
4,873,671	+		AMB_RS22585	0.11	-2.1
4,873,671	+		AMB_RS22585	0.11	+0.1
4,873,672	-		AMB_RS22585	0.11	+1.8
4,873,855	+		AMB_RS22585	0.25	+1.8
4,873,855	+		AMB_RS22585	0.25	-1.0
4,873,855	+		AMB_RS22585	0.25	-0.6
4,873,855	+		AMB_RS22585	0.25	+0.0
4,873,855	+		AMB_RS22585	0.25	-1.6
4,873,855	+		AMB_RS22585	0.25	-2.1
4,873,855	+		AMB_RS22585	0.25	-0.1
4,873,856	-		AMB_RS22585	0.25	-0.8
4,873,856	-		AMB_RS22585	0.25	-0.2
4,873,856	-		AMB_RS22585	0.25	+1.8
4,874,035	+		AMB_RS22585	0.39	+0.5
4,874,035	+		AMB_RS22585	0.39	+0.4
4,874,035	+		AMB_RS22585	0.39	-0.6
4,874,036	-		AMB_RS22585	0.39	-2.4
4,874,036	-		AMB_RS22585	0.39	-0.2
4,874,036	-		AMB_RS22585	0.39	+0.8
4,874,038	-		AMB_RS22585	0.39	-1.0
4,874,053	+		AMB_RS22585	0.40	+0.8
4,874,053	+		AMB_RS22585	0.40	+0.2
4,874,053	+		AMB_RS22585	0.40	-0.8
4,874,054	-		AMB_RS22585	0.40	-0.1
4,874,228	-		AMB_RS22585	0.53	-0.1
4,874,349	+		AMB_RS22585	0.63	-1.8
4,874,377	+		AMB_RS22585	0.65	-2.2
4,874,377	+		AMB_RS22585	0.65	-0.3
4,874,377	+		AMB_RS22585	0.65	+0.5
4,874,377	+		AMB_RS22585	0.65	+0.6
4,874,377	+		AMB_RS22585	0.65	-0.8
4,874,377	+		AMB_RS22585	0.65	-0.4
4,874,377	+		AMB_RS22585	0.65	+1.8
4,874,378	-		AMB_RS22585	0.65	-0.2
4,874,378	-		AMB_RS22585	0.65	-0.2
4,874,378	-		AMB_RS22585	0.65	-0.4
4,874,378	-		AMB_RS22585	0.65	-1.7
4,874,378	-		AMB_RS22585	0.65	+0.1
4,874,378	-		AMB_RS22585	0.65	+0.5
4,874,378	-		AMB_RS22585	0.65	-1.0
4,874,378	-		AMB_RS22585	0.65	+0.1
4,874,378	-		AMB_RS22585	0.65	-1.6
4,874,378	-		AMB_RS22585	0.65	-0.8
4,874,378	-		AMB_RS22585	0.65	-1.8
4,874,378	-		AMB_RS22585	0.65	-1.8
4,874,378	-		AMB_RS22585	0.65	+0.2
4,874,521	+		AMB_RS22585	0.76	-0.2
4,874,521	+		AMB_RS22585	0.76	-1.6
4,874,521	+		AMB_RS22585	0.76	-1.9
4,874,521	+		AMB_RS22585	0.76	-0.2
4,874,521	+		AMB_RS22585	0.76	-1.9
4,874,522	-		AMB_RS22585	0.76	+0.2
4,874,522	-		AMB_RS22585	0.76	-0.3
4,874,522	-		AMB_RS22585	0.76	-0.8
4,874,522	-		AMB_RS22585	0.76	-1.2
4,874,522	-		AMB_RS22585	0.76	-0.0
4,874,533	+		AMB_RS22585	0.77	+0.3
4,874,533	+		AMB_RS22585	0.77	+0.2
4,874,533	+		AMB_RS22585	0.77	+0.5
4,874,534	-		AMB_RS22585	0.77	-1.4
4,874,534	-		AMB_RS22585	0.77	-1.2
4,874,534	-		AMB_RS22585	0.77	+0.8
4,874,534	-		AMB_RS22585	0.77	+0.2
4,874,534	-		AMB_RS22585	0.77	-0.6
4,874,534	-		AMB_RS22585	0.77	+0.8
4,874,534	-		AMB_RS22585	0.77	-1.3
4,874,534	-		AMB_RS22585	0.77	+0.5
4,874,717	+				-2.5
4,874,718	-				-0.2
4,874,718	-				-0.8
4,874,734	+				-1.9
4,874,734	+				-0.6
4,874,734	+				-0.2
4,874,734	+				+0.2
4,874,735	-				+0.5
4,874,736	+				-3.0
4,874,736	+				-1.0
4,874,736	+				-1.0
4,874,736	+				-1.0
4,874,736	+				+0.2
4,874,736	+				-2.8
4,874,736	+				+0.2
4,874,737	-				-0.6
4,874,737	-				-1.1
4,874,737	-				+0.4
4,874,737	-				+0.3
4,874,737	-				-2.3
4,874,737	-				+0.8
4,874,737	-				-0.2
4,874,972	+		AMB_RS22590	0.14	+0.0
4,874,972	+		AMB_RS22590	0.14	-0.1
4,874,973	-		AMB_RS22590	0.14	-0.1
4,874,973	-		AMB_RS22590	0.14	-1.6
4,875,036	+		AMB_RS22590	0.20	+0.8
4,875,036	+		AMB_RS22590	0.20	-0.6
4,875,036	+		AMB_RS22590	0.20	-1.4
4,875,036	+		AMB_RS22590	0.20	-0.2
4,875,037	-		AMB_RS22590	0.20	-1.2
4,875,037	-		AMB_RS22590	0.20	-0.8
4,875,164	+		AMB_RS22590	0.33	+0.6
4,875,195	+		AMB_RS22590	0.36	-0.5
4,875,195	+		AMB_RS22590	0.36	-0.8
4,875,195	+		AMB_RS22590	0.36	-0.6
4,875,195	+		AMB_RS22590	0.36	-0.1
4,875,196	-		AMB_RS22590	0.36	-0.2
4,875,196	-		AMB_RS22590	0.36	-0.0
4,875,196	-		AMB_RS22590	0.36	-1.4
4,875,196	-		AMB_RS22590	0.36	-1.9
4,875,197	+		AMB_RS22590	0.37	+0.3
4,875,197	+		AMB_RS22590	0.37	+0.3
4,875,261	+		AMB_RS22590	0.43	-1.8
4,875,262	-		AMB_RS22590	0.43	-2.0
4,875,262	-		AMB_RS22590	0.43	+0.1
4,875,262	-		AMB_RS22590	0.43	+0.1
4,875,396	+		AMB_RS22590	0.57	-4.1
4,875,396	+		AMB_RS22590	0.57	+0.8
4,875,397	-		AMB_RS22590	0.57	-0.5
4,875,397	-		AMB_RS22590	0.57	-0.7
4,875,401	-		AMB_RS22590	0.57	-1.8
4,875,401	-		AMB_RS22590	0.57	-2.1
4,875,401	-		AMB_RS22590	0.57	-2.8
4,875,401	-		AMB_RS22590	0.57	+0.8
4,875,401	-		AMB_RS22590	0.57	-1.7
4,875,424	-		AMB_RS22590	0.60	-0.2
4,875,771	+				+0.1
4,875,772	-				-0.2
4,875,772	-				+0.8
4,875,828	+				+0.2
4,875,828	+				-0.4
4,875,828	+				+0.8