Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS21565 and AMB_RS21570 are separated by 64 nucleotides AMB_RS21570 and AMB_RS21575 are separated by 333 nucleotides AMB_RS21575 and AMB_RS21580 are separated by 13 nucleotides AMB_RS21580 and AMB_RS21585 are separated by 347 nucleotides
AMB_RS21565: AMB_RS21565 - tRNA-Ala, at 4,675,393 to 4,675,468
_RS21565
AMB_RS21570: AMB_RS21570 - hypothetical protein, at 4,675,533 to 4,675,967
_RS21570
AMB_RS21575: AMB_RS21575 - hypothetical protein, at 4,676,301 to 4,677,119
_RS21575
AMB_RS21580: AMB_RS21580 - hypothetical protein, at 4,677,133 to 4,677,402
_RS21580
AMB_RS21585: AMB_RS21585 - hypothetical protein, at 4,677,750 to 4,678,319
_RS21585
Position (kb) 4676
4677
4678 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4675.473 kb on - strand at 4675.534 kb on + strand at 4675.535 kb on - strand at 4675.535 kb on - strand at 4675.535 kb on - strand at 4675.552 kb on + strand at 4675.552 kb on + strand at 4675.552 kb on + strand at 4675.553 kb on - strand at 4675.553 kb on - strand at 4675.553 kb on - strand at 4675.690 kb on + strand, within AMB_RS21570 at 4675.690 kb on + strand, within AMB_RS21570 at 4675.690 kb on + strand, within AMB_RS21570 at 4675.690 kb on + strand, within AMB_RS21570 at 4675.691 kb on - strand, within AMB_RS21570 at 4675.691 kb on - strand, within AMB_RS21570 at 4675.819 kb on + strand, within AMB_RS21570 at 4675.819 kb on + strand, within AMB_RS21570 at 4675.819 kb on + strand, within AMB_RS21570 at 4675.819 kb on + strand, within AMB_RS21570 at 4675.820 kb on - strand, within AMB_RS21570 at 4675.850 kb on + strand, within AMB_RS21570 at 4675.850 kb on + strand, within AMB_RS21570 at 4675.850 kb on + strand, within AMB_RS21570 at 4675.995 kb on + strand at 4675.996 kb on - strand at 4675.996 kb on - strand at 4676.326 kb on - strand at 4676.337 kb on + strand at 4676.338 kb on - strand at 4676.361 kb on + strand at 4676.362 kb on - strand at 4676.535 kb on + strand, within AMB_RS21575 at 4676.535 kb on + strand, within AMB_RS21575 at 4676.535 kb on + strand, within AMB_RS21575 at 4676.535 kb on + strand, within AMB_RS21575 at 4676.535 kb on + strand, within AMB_RS21575 at 4676.536 kb on - strand, within AMB_RS21575 at 4676.538 kb on + strand, within AMB_RS21575 at 4676.538 kb on + strand, within AMB_RS21575 at 4676.539 kb on - strand, within AMB_RS21575 at 4676.539 kb on - strand, within AMB_RS21575 at 4676.539 kb on - strand, within AMB_RS21575 at 4676.619 kb on + strand, within AMB_RS21575 at 4676.619 kb on + strand, within AMB_RS21575 at 4676.620 kb on - strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.679 kb on + strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.680 kb on - strand, within AMB_RS21575 at 4676.841 kb on + strand, within AMB_RS21575 at 4676.841 kb on + strand, within AMB_RS21575 at 4676.842 kb on - strand, within AMB_RS21575 at 4676.947 kb on - strand, within AMB_RS21575 at 4676.947 kb on - strand, within AMB_RS21575 at 4676.952 kb on + strand, within AMB_RS21575 at 4676.952 kb on + strand, within AMB_RS21575 at 4676.959 kb on - strand, within AMB_RS21575 at 4677.015 kb on + strand, within AMB_RS21575 at 4677.015 kb on + strand, within AMB_RS21575 at 4677.015 kb on + strand, within AMB_RS21575 at 4677.016 kb on - strand, within AMB_RS21575 at 4677.016 kb on - strand, within AMB_RS21575 at 4677.053 kb on + strand at 4677.053 kb on + strand at 4677.117 kb on + strand at 4677.117 kb on + strand at 4677.117 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.127 kb on + strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.128 kb on - strand at 4677.139 kb on + strand at 4677.139 kb on + strand at 4677.139 kb on + strand at 4677.140 kb on - strand at 4677.140 kb on - strand at 4677.169 kb on + strand, within AMB_RS21580 at 4677.169 kb on + strand, within AMB_RS21580 at 4677.170 kb on - strand, within AMB_RS21580 at 4677.196 kb on + strand, within AMB_RS21580 at 4677.196 kb on + strand, within AMB_RS21580 at 4677.196 kb on + strand, within AMB_RS21580 at 4677.197 kb on - strand, within AMB_RS21580 at 4677.197 kb on - strand, within AMB_RS21580 at 4677.197 kb on - strand, within AMB_RS21580 at 4677.238 kb on + strand, within AMB_RS21580 at 4677.238 kb on + strand, within AMB_RS21580 at 4677.342 kb on + strand, within AMB_RS21580 at 4677.400 kb on + strand at 4677.400 kb on + strand at 4677.400 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.737 kb on + strand at 4677.738 kb on - strand at 4677.966 kb on + strand, within AMB_RS21585 at 4677.966 kb on + strand, within AMB_RS21585 at 4677.966 kb on + strand, within AMB_RS21585 at 4677.966 kb on + strand, within AMB_RS21585 at 4677.967 kb on - strand, within AMB_RS21585 at 4677.967 kb on - strand, within AMB_RS21585 at 4677.967 kb on - strand, within AMB_RS21585 at 4678.046 kb on + strand, within AMB_RS21585 at 4678.047 kb on - strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.095 kb on + strand, within AMB_RS21585 at 4678.096 kb on - strand, within AMB_RS21585 at 4678.096 kb on - strand, within AMB_RS21585 at 4678.096 kb on - strand, within AMB_RS21585
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 4,675,473 - -1.9 4,675,534 + -0.5 4,675,535 - -0.1 4,675,535 - -0.3 4,675,535 - +0.7 4,675,552 + +0.0 4,675,552 + -0.1 4,675,552 + +0.1 4,675,553 - -1.1 4,675,553 - +0.1 4,675,553 - +0.3 4,675,690 + AMB_RS21570 0.36 -1.3 4,675,690 + AMB_RS21570 0.36 +0.0 4,675,690 + AMB_RS21570 0.36 -0.6 4,675,690 + AMB_RS21570 0.36 -1.7 4,675,691 - AMB_RS21570 0.36 -2.9 4,675,691 - AMB_RS21570 0.36 -0.3 4,675,819 + AMB_RS21570 0.66 -0.1 4,675,819 + AMB_RS21570 0.66 -1.3 4,675,819 + AMB_RS21570 0.66 -0.1 4,675,819 + AMB_RS21570 0.66 +0.1 4,675,820 - AMB_RS21570 0.66 +0.8 4,675,850 + AMB_RS21570 0.73 +0.1 4,675,850 + AMB_RS21570 0.73 -1.1 4,675,850 + AMB_RS21570 0.73 +0.7 4,675,995 + +0.1 4,675,996 - -1.3 4,675,996 - -1.7 4,676,326 - +0.1 4,676,337 + +0.2 4,676,338 - +0.4 4,676,361 + -0.4 4,676,362 - -0.6 4,676,535 + AMB_RS21575 0.29 -0.3 4,676,535 + AMB_RS21575 0.29 +0.3 4,676,535 + AMB_RS21575 0.29 -1.5 4,676,535 + AMB_RS21575 0.29 +1.0 4,676,535 + AMB_RS21575 0.29 -1.3 4,676,536 - AMB_RS21575 0.29 -0.6 4,676,538 + AMB_RS21575 0.29 -0.8 4,676,538 + AMB_RS21575 0.29 -0.8 4,676,539 - AMB_RS21575 0.29 +0.3 4,676,539 - AMB_RS21575 0.29 +1.7 4,676,539 - AMB_RS21575 0.29 -0.4 4,676,619 + AMB_RS21575 0.39 -0.1 4,676,619 + AMB_RS21575 0.39 -0.3 4,676,620 - AMB_RS21575 0.39 -0.0 4,676,679 + AMB_RS21575 0.46 +0.6 4,676,679 + AMB_RS21575 0.46 -0.3 4,676,679 + AMB_RS21575 0.46 +0.1 4,676,679 + AMB_RS21575 0.46 +0.2 4,676,679 + AMB_RS21575 0.46 +0.2 4,676,679 + AMB_RS21575 0.46 -0.3 4,676,679 + AMB_RS21575 0.46 +0.6 4,676,680 - AMB_RS21575 0.46 -1.1 4,676,680 - AMB_RS21575 0.46 -0.0 4,676,680 - AMB_RS21575 0.46 -0.5 4,676,680 - AMB_RS21575 0.46 -1.1 4,676,680 - AMB_RS21575 0.46 -1.7 4,676,680 - AMB_RS21575 0.46 -2.1 4,676,680 - AMB_RS21575 0.46 -0.6 4,676,680 - AMB_RS21575 0.46 -0.6 4,676,680 - AMB_RS21575 0.46 +0.2 4,676,680 - AMB_RS21575 0.46 -2.5 4,676,680 - AMB_RS21575 0.46 -0.4 4,676,841 + AMB_RS21575 0.66 -0.0 4,676,841 + AMB_RS21575 0.66 -0.4 4,676,842 - AMB_RS21575 0.66 +1.7 4,676,947 - AMB_RS21575 0.79 -2.7 4,676,947 - AMB_RS21575 0.79 -1.1 4,676,952 + AMB_RS21575 0.79 -0.6 4,676,952 + AMB_RS21575 0.79 -0.6 4,676,959 - AMB_RS21575 0.80 +0.3 4,677,015 + AMB_RS21575 0.87 +1.7 4,677,015 + AMB_RS21575 0.87 +0.0 4,677,015 + AMB_RS21575 0.87 -1.5 4,677,016 - AMB_RS21575 0.87 +0.3 4,677,016 - AMB_RS21575 0.87 -1.9 4,677,053 + -1.5 4,677,053 + -0.1 4,677,117 + -2.6 4,677,117 + +0.9 4,677,117 + -0.9 4,677,127 + +0.2 4,677,127 + -0.2 4,677,127 + +0.5 4,677,127 + -0.2 4,677,127 + -0.3 4,677,127 + +2.1 4,677,127 + -1.1 4,677,127 + -0.9 4,677,128 - -1.7 4,677,128 - -2.4 4,677,128 - -0.1 4,677,128 - +0.1 4,677,128 - +0.9 4,677,128 - +0.0 4,677,128 - -0.4 4,677,128 - -0.1 4,677,128 - -0.1 4,677,139 + +0.2 4,677,139 + +0.4 4,677,139 + -0.6 4,677,140 - -0.0 4,677,140 - -1.4 4,677,169 + AMB_RS21580 0.13 +0.1 4,677,169 + AMB_RS21580 0.13 +0.7 4,677,170 - AMB_RS21580 0.14 -0.6 4,677,196 + AMB_RS21580 0.23 +0.3 4,677,196 + AMB_RS21580 0.23 +0.1 4,677,196 + AMB_RS21580 0.23 -2.6 4,677,197 - AMB_RS21580 0.24 -0.6 4,677,197 - AMB_RS21580 0.24 +0.5 4,677,197 - AMB_RS21580 0.24 +0.7 4,677,238 + AMB_RS21580 0.39 +0.0 4,677,238 + AMB_RS21580 0.39 -1.2 4,677,342 + AMB_RS21580 0.77 -0.0 4,677,400 + +0.3 4,677,400 + +1.0 4,677,400 + -0.3 4,677,737 + -0.6 4,677,737 + -0.2 4,677,737 + +0.3 4,677,737 + +0.7 4,677,737 + -0.2 4,677,737 + +1.7 4,677,737 + -0.9 4,677,737 + -0.3 4,677,737 + -0.1 4,677,737 + -0.4 4,677,737 + -0.6 4,677,738 - -1.1 4,677,966 + AMB_RS21585 0.38 -0.1 4,677,966 + AMB_RS21585 0.38 -0.6 4,677,966 + AMB_RS21585 0.38 +0.4 4,677,966 + AMB_RS21585 0.38 -0.6 4,677,967 - AMB_RS21585 0.38 +0.1 4,677,967 - AMB_RS21585 0.38 +0.1 4,677,967 - AMB_RS21585 0.38 -0.4 4,678,046 + AMB_RS21585 0.52 -0.3 4,678,047 - AMB_RS21585 0.52 +0.1 4,678,095 + AMB_RS21585 0.61 -2.8 4,678,095 + AMB_RS21585 0.61 -0.6 4,678,095 + AMB_RS21585 0.61 -0.6 4,678,095 + AMB_RS21585 0.61 +0.4 4,678,095 + AMB_RS21585 0.61 +0.8 4,678,095 + AMB_RS21585 0.61 -1.3 4,678,096 - AMB_RS21585 0.61 +0.1 4,678,096 - AMB_RS21585 0.61 +0.5 4,678,096 - AMB_RS21585 0.61 -0.6
Or see this region's nucleotide sequence