Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20890

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS20880 and AMB_RS20885 are separated by 103 nucleotidesAMB_RS20885 and AMB_RS20890 overlap by 11 nucleotidesAMB_RS20890 and AMB_RS20895 overlap by 8 nucleotidesAMB_RS20895 and AMB_RS20900 are separated by 3 nucleotides AMB_RS20880: AMB_RS20880 - FCD domain-containing protein, at 4,533,931 to 4,534,554 _RS20880 AMB_RS20885: AMB_RS20885 - (Fe-S)-binding protein, at 4,534,658 to 4,535,407 _RS20885 AMB_RS20890: AMB_RS20890 - iron-sulfur cluster-binding protein, at 4,535,397 to 4,536,833 _RS20890 AMB_RS20895: AMB_RS20895 - lactate utilization protein, at 4,536,826 to 4,537,476 _RS20895 AMB_RS20900: AMB_RS20900 - FAD-binding oxidoreductase, at 4,537,480 to 4,540,290 _RS20900 Position (kb) 4535 4536 4537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4534.449 kb on + strand, within AMB_RS20880at 4534.449 kb on + strand, within AMB_RS20880at 4534.449 kb on + strand, within AMB_RS20880at 4534.450 kb on - strand, within AMB_RS20880at 4534.450 kb on - strand, within AMB_RS20880at 4534.450 kb on - strand, within AMB_RS20880at 4534.688 kb on + strandat 4534.688 kb on + strandat 4534.688 kb on + strandat 4534.689 kb on - strandat 4534.689 kb on - strandat 4534.722 kb on - strandat 4534.938 kb on - strand, within AMB_RS20885at 4535.001 kb on - strand, within AMB_RS20885at 4535.001 kb on - strand, within AMB_RS20885at 4535.001 kb on - strand, within AMB_RS20885at 4535.817 kb on + strand, within AMB_RS20890at 4535.817 kb on + strand, within AMB_RS20890at 4535.817 kb on + strand, within AMB_RS20890at 4535.817 kb on + strand, within AMB_RS20890at 4535.817 kb on + strand, within AMB_RS20890at 4535.818 kb on - strand, within AMB_RS20890at 4535.818 kb on - strand, within AMB_RS20890at 4535.818 kb on - strand, within AMB_RS20890at 4535.852 kb on + strand, within AMB_RS20890at 4535.929 kb on - strand, within AMB_RS20890at 4535.929 kb on - strand, within AMB_RS20890at 4535.931 kb on - strand, within AMB_RS20890at 4536.207 kb on + strand, within AMB_RS20890at 4536.207 kb on + strand, within AMB_RS20890at 4536.208 kb on - strand, within AMB_RS20890at 4536.208 kb on - strand, within AMB_RS20890at 4536.208 kb on - strand, within AMB_RS20890at 4536.375 kb on + strand, within AMB_RS20890at 4536.375 kb on + strand, within AMB_RS20890at 4536.375 kb on + strand, within AMB_RS20890at 4536.376 kb on - strand, within AMB_RS20890at 4536.376 kb on - strand, within AMB_RS20890at 4536.376 kb on - strand, within AMB_RS20890at 4536.376 kb on - strand, within AMB_RS20890at 4536.377 kb on + strand, within AMB_RS20890at 4536.377 kb on + strand, within AMB_RS20890at 4536.378 kb on - strand, within AMB_RS20890at 4536.378 kb on - strand, within AMB_RS20890at 4536.378 kb on - strand, within AMB_RS20890at 4536.399 kb on + strand, within AMB_RS20890at 4536.399 kb on + strand, within AMB_RS20890at 4536.399 kb on + strand, within AMB_RS20890at 4536.399 kb on + strand, within AMB_RS20890at 4536.399 kb on + strand, within AMB_RS20890at 4536.399 kb on + strand, within AMB_RS20890at 4536.399 kb on + strand, within AMB_RS20890at 4536.399 kb on + strand, within AMB_RS20890at 4536.400 kb on - strand, within AMB_RS20890at 4536.400 kb on - strand, within AMB_RS20890at 4536.400 kb on - strand, within AMB_RS20890at 4536.400 kb on - strand, within AMB_RS20890at 4536.660 kb on + strand, within AMB_RS20890at 4536.660 kb on + strand, within AMB_RS20890at 4536.660 kb on + strand, within AMB_RS20890at 4536.661 kb on - strand, within AMB_RS20890at 4536.661 kb on - strand, within AMB_RS20890at 4536.678 kb on + strand, within AMB_RS20890at 4536.819 kb on + strandat 4536.819 kb on + strandat 4536.819 kb on + strandat 4536.820 kb on - strandat 4536.831 kb on + strandat 4536.832 kb on - strandat 4536.846 kb on + strandat 4536.846 kb on + strandat 4536.847 kb on - strandat 4536.847 kb on - strandat 4536.917 kb on - strand, within AMB_RS20895at 4536.917 kb on - strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.047 kb on + strand, within AMB_RS20895at 4537.048 kb on - strand, within AMB_RS20895at 4537.048 kb on - strand, within AMB_RS20895at 4537.048 kb on - strand, within AMB_RS20895at 4537.048 kb on - strand, within AMB_RS20895at 4537.054 kb on + strand, within AMB_RS20895at 4537.054 kb on + strand, within AMB_RS20895at 4537.054 kb on + strand, within AMB_RS20895at 4537.055 kb on - strand, within AMB_RS20895at 4537.126 kb on + strand, within AMB_RS20895at 4537.126 kb on + strand, within AMB_RS20895at 4537.126 kb on + strand, within AMB_RS20895at 4537.127 kb on - strand, within AMB_RS20895at 4537.127 kb on - strand, within AMB_RS20895at 4537.127 kb on - strand, within AMB_RS20895at 4537.423 kb on + strandat 4537.423 kb on + strandat 4537.423 kb on + strandat 4537.424 kb on - strandat 4537.424 kb on - strandat 4537.501 kb on + strandat 4537.502 kb on - strandat 4537.579 kb on + strandat 4537.580 kb on - strandat 4537.600 kb on + strandat 4537.757 kb on + strandat 4537.757 kb on + strandat 4537.757 kb on + strandat 4537.758 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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4,534,449 + AMB_RS20880 0.83 +0.3
4,534,449 + AMB_RS20880 0.83 -1.7
4,534,449 + AMB_RS20880 0.83 -2.0
4,534,450 - AMB_RS20880 0.83 -1.3
4,534,450 - AMB_RS20880 0.83 +0.7
4,534,450 - AMB_RS20880 0.83 +0.7
4,534,688 + -0.3
4,534,688 + +0.0
4,534,688 + +0.1
4,534,689 - -0.4
4,534,689 - +0.6
4,534,722 - +0.8
4,534,938 - AMB_RS20885 0.37 +0.1
4,535,001 - AMB_RS20885 0.46 +1.5
4,535,001 - AMB_RS20885 0.46 -1.0
4,535,001 - AMB_RS20885 0.46 +0.2
4,535,817 + AMB_RS20890 0.29 -0.7
4,535,817 + AMB_RS20890 0.29 -1.3
4,535,817 + AMB_RS20890 0.29 +0.3
4,535,817 + AMB_RS20890 0.29 -1.7
4,535,817 + AMB_RS20890 0.29 -0.3
4,535,818 - AMB_RS20890 0.29 +0.0
4,535,818 - AMB_RS20890 0.29 +1.0
4,535,818 - AMB_RS20890 0.29 -0.3
4,535,852 + AMB_RS20890 0.32 -1.7
4,535,929 - AMB_RS20890 0.37 +0.4
4,535,929 - AMB_RS20890 0.37 +0.2
4,535,931 - AMB_RS20890 0.37 -2.1
4,536,207 + AMB_RS20890 0.56 -0.7
4,536,207 + AMB_RS20890 0.56 +0.1
4,536,208 - AMB_RS20890 0.56 +1.8
4,536,208 - AMB_RS20890 0.56 -1.5
4,536,208 - AMB_RS20890 0.56 +1.7
4,536,375 + AMB_RS20890 0.68 +0.4
4,536,375 + AMB_RS20890 0.68 +0.1
4,536,375 + AMB_RS20890 0.68 +0.3
4,536,376 - AMB_RS20890 0.68 -2.5
4,536,376 - AMB_RS20890 0.68 +0.3
4,536,376 - AMB_RS20890 0.68 +0.2
4,536,376 - AMB_RS20890 0.68 -2.1
4,536,377 + AMB_RS20890 0.68 -1.8
4,536,377 + AMB_RS20890 0.68 -0.5
4,536,378 - AMB_RS20890 0.68 +0.7
4,536,378 - AMB_RS20890 0.68 -1.8
4,536,378 - AMB_RS20890 0.68 +0.7
4,536,399 + AMB_RS20890 0.70 +0.6
4,536,399 + AMB_RS20890 0.70 -1.9
4,536,399 + AMB_RS20890 0.70 -0.3
4,536,399 + AMB_RS20890 0.70 +0.1
4,536,399 + AMB_RS20890 0.70 +0.0
4,536,399 + AMB_RS20890 0.70 -2.2
4,536,399 + AMB_RS20890 0.70 -0.1
4,536,399 + AMB_RS20890 0.70 -1.5
4,536,400 - AMB_RS20890 0.70 +0.5
4,536,400 - AMB_RS20890 0.70 +1.7
4,536,400 - AMB_RS20890 0.70 -0.3
4,536,400 - AMB_RS20890 0.70 -1.5
4,536,660 + AMB_RS20890 0.88 -0.4
4,536,660 + AMB_RS20890 0.88 +0.6
4,536,660 + AMB_RS20890 0.88 +0.3
4,536,661 - AMB_RS20890 0.88 -0.0
4,536,661 - AMB_RS20890 0.88 +0.8
4,536,678 + AMB_RS20890 0.89 -0.8
4,536,819 + +0.1
4,536,819 + -0.1
4,536,819 + -0.3
4,536,820 - -3.0
4,536,831 + +0.1
4,536,832 - -1.8
4,536,846 + -1.5
4,536,846 + +0.1
4,536,847 - +0.3
4,536,847 - -1.5
4,536,917 - AMB_RS20895 0.14 +0.1
4,536,917 - AMB_RS20895 0.14 -0.2
4,537,047 + AMB_RS20895 0.34 -0.0
4,537,047 + AMB_RS20895 0.34 +0.8
4,537,047 + AMB_RS20895 0.34 -1.9
4,537,047 + AMB_RS20895 0.34 -0.2
4,537,047 + AMB_RS20895 0.34 +0.1
4,537,047 + AMB_RS20895 0.34 -0.3
4,537,047 + AMB_RS20895 0.34 -2.1
4,537,047 + AMB_RS20895 0.34 +0.5
4,537,047 + AMB_RS20895 0.34 +0.2
4,537,047 + AMB_RS20895 0.34 -0.9
4,537,048 - AMB_RS20895 0.34 +0.5
4,537,048 - AMB_RS20895 0.34 +0.4
4,537,048 - AMB_RS20895 0.34 -0.2
4,537,048 - AMB_RS20895 0.34 -0.0
4,537,054 + AMB_RS20895 0.35 +0.0
4,537,054 + AMB_RS20895 0.35 -0.5
4,537,054 + AMB_RS20895 0.35 -0.3
4,537,055 - AMB_RS20895 0.35 -1.3
4,537,126 + AMB_RS20895 0.46 -0.3
4,537,126 + AMB_RS20895 0.46 +0.4
4,537,126 + AMB_RS20895 0.46 -0.5
4,537,127 - AMB_RS20895 0.46 +0.3
4,537,127 - AMB_RS20895 0.46 -0.1
4,537,127 - AMB_RS20895 0.46 -0.9
4,537,423 + -0.3
4,537,423 + -0.2
4,537,423 + -0.1
4,537,424 - -0.6
4,537,424 - -0.1
4,537,501 + -0.8
4,537,502 - +0.2
4,537,579 + +0.4
4,537,580 - -1.1
4,537,600 + -0.3
4,537,757 + +0.7
4,537,757 + -0.7
4,537,757 + -2.2
4,537,758 - +0.3

Or see this region's nucleotide sequence