Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS20875

Experiment: 30_an_initial_2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAMB_RS20865 and AMB_RS20870 overlap by 4 nucleotidesAMB_RS20870 and AMB_RS20875 are separated by 92 nucleotidesAMB_RS20875 and AMB_RS20880 are separated by 162 nucleotidesAMB_RS20880 and AMB_RS20885 are separated by 103 nucleotides AMB_RS20865: AMB_RS20865 - rRNA pseudouridine synthase, at 4,530,276 to 4,531,322 _RS20865 AMB_RS20870: AMB_RS20870 - gamma-glutamyl-gamma-aminobutyrate hydrolase, at 4,531,319 to 4,532,032 _RS20870 AMB_RS20875: AMB_RS20875 - L-lactate permease, at 4,532,125 to 4,533,768 _RS20875 AMB_RS20880: AMB_RS20880 - FCD domain-containing protein, at 4,533,931 to 4,534,554 _RS20880 AMB_RS20885: AMB_RS20885 - (Fe-S)-binding protein, at 4,534,658 to 4,535,407 _RS20885 Position (kb) 4532 4533 4534Strain fitness (log2 ratio) -3 -2 -1 0 1at 4531.335 kb on - strandat 4531.335 kb on - strandat 4531.378 kb on - strandat 4531.939 kb on - strand, within AMB_RS20870at 4532.003 kb on - strandat 4532.042 kb on + strandat 4532.042 kb on + strandat 4532.042 kb on + strandat 4532.042 kb on + strandat 4532.042 kb on + strandat 4532.043 kb on - strandat 4532.043 kb on - strandat 4532.043 kb on - strandat 4532.043 kb on - strandat 4532.043 kb on - strandat 4532.043 kb on - strandat 4532.043 kb on - strandat 4532.043 kb on - strandat 4532.043 kb on - strandat 4532.126 kb on + strandat 4532.150 kb on + strandat 4532.150 kb on + strandat 4532.150 kb on + strandat 4532.150 kb on + strandat 4532.150 kb on + strandat 4532.150 kb on + strandat 4532.151 kb on - strandat 4532.151 kb on - strandat 4532.151 kb on - strandat 4532.151 kb on - strandat 4532.456 kb on + strand, within AMB_RS20875at 4532.523 kb on - strand, within AMB_RS20875at 4532.523 kb on - strand, within AMB_RS20875at 4532.523 kb on - strand, within AMB_RS20875at 4532.552 kb on + strand, within AMB_RS20875at 4532.552 kb on + strand, within AMB_RS20875at 4532.552 kb on + strand, within AMB_RS20875at 4532.552 kb on + strand, within AMB_RS20875at 4532.552 kb on + strand, within AMB_RS20875at 4532.552 kb on + strand, within AMB_RS20875at 4532.552 kb on + strand, within AMB_RS20875at 4532.553 kb on - strand, within AMB_RS20875at 4532.553 kb on - strand, within AMB_RS20875at 4532.553 kb on - strand, within AMB_RS20875at 4532.553 kb on - strand, within AMB_RS20875at 4532.553 kb on - strand, within AMB_RS20875at 4532.553 kb on - strand, within AMB_RS20875at 4532.553 kb on - strand, within AMB_RS20875at 4532.553 kb on - strand, within AMB_RS20875at 4532.688 kb on + strand, within AMB_RS20875at 4532.688 kb on + strand, within AMB_RS20875at 4532.689 kb on - strand, within AMB_RS20875at 4532.689 kb on - strand, within AMB_RS20875at 4532.690 kb on + strand, within AMB_RS20875at 4532.691 kb on - strand, within AMB_RS20875at 4532.691 kb on - strand, within AMB_RS20875at 4532.691 kb on - strand, within AMB_RS20875at 4532.691 kb on - strand, within AMB_RS20875at 4532.691 kb on - strand, within AMB_RS20875at 4532.900 kb on + strand, within AMB_RS20875at 4532.900 kb on + strand, within AMB_RS20875at 4532.901 kb on - strand, within AMB_RS20875at 4532.901 kb on - strand, within AMB_RS20875at 4533.037 kb on - strand, within AMB_RS20875at 4533.037 kb on - strand, within AMB_RS20875at 4533.038 kb on + strand, within AMB_RS20875at 4533.038 kb on + strand, within AMB_RS20875at 4533.038 kb on + strand, within AMB_RS20875at 4533.038 kb on + strand, within AMB_RS20875at 4533.038 kb on + strand, within AMB_RS20875at 4533.038 kb on + strand, within AMB_RS20875at 4533.038 kb on + strand, within AMB_RS20875at 4533.038 kb on + strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.039 kb on - strand, within AMB_RS20875at 4533.495 kb on + strand, within AMB_RS20875at 4533.495 kb on + strand, within AMB_RS20875at 4533.495 kb on + strand, within AMB_RS20875at 4533.496 kb on - strand, within AMB_RS20875at 4533.496 kb on - strand, within AMB_RS20875at 4533.497 kb on + strand, within AMB_RS20875at 4533.497 kb on + strand, within AMB_RS20875at 4533.497 kb on + strand, within AMB_RS20875at 4533.497 kb on + strand, within AMB_RS20875at 4533.498 kb on - strand, within AMB_RS20875at 4533.498 kb on - strand, within AMB_RS20875at 4533.498 kb on - strand, within AMB_RS20875at 4533.498 kb on - strand, within AMB_RS20875at 4533.498 kb on - strand, within AMB_RS20875at 4533.498 kb on - strand, within AMB_RS20875at 4533.498 kb on - strand, within AMB_RS20875at 4533.498 kb on - strand, within AMB_RS20875at 4533.596 kb on + strand, within AMB_RS20875at 4533.596 kb on + strand, within AMB_RS20875at 4533.597 kb on - strand, within AMB_RS20875at 4533.597 kb on - strand, within AMB_RS20875at 4533.746 kb on + strandat 4533.746 kb on + strandat 4533.746 kb on + strandat 4533.901 kb on + strandat 4533.966 kb on + strandat 4533.966 kb on + strandat 4533.966 kb on + strandat 4533.967 kb on - strandat 4533.967 kb on - strandat 4533.967 kb on - strandat 4533.967 kb on - strandat 4533.967 kb on - strandat 4533.967 kb on - strandat 4533.967 kb on - strandat 4534.246 kb on + strand, within AMB_RS20880at 4534.246 kb on + strand, within AMB_RS20880at 4534.246 kb on + strand, within AMB_RS20880at 4534.246 kb on + strand, within AMB_RS20880at 4534.247 kb on - strand, within AMB_RS20880at 4534.321 kb on + strand, within AMB_RS20880at 4534.321 kb on + strand, within AMB_RS20880at 4534.321 kb on + strand, within AMB_RS20880at 4534.322 kb on - strand, within AMB_RS20880at 4534.449 kb on + strand, within AMB_RS20880at 4534.449 kb on + strand, within AMB_RS20880at 4534.449 kb on + strand, within AMB_RS20880at 4534.450 kb on - strand, within AMB_RS20880at 4534.450 kb on - strand, within AMB_RS20880at 4534.450 kb on - strand, within AMB_RS20880at 4534.688 kb on + strandat 4534.688 kb on + strandat 4534.688 kb on + strandat 4534.689 kb on - strandat 4534.689 kb on - strandat 4534.722 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
remove
4,531,335 - +1.7
4,531,335 - -1.2
4,531,378 - -2.0
4,531,939 - AMB_RS20870 0.87 -0.7
4,532,003 - -0.5
4,532,042 + -0.7
4,532,042 + -1.3
4,532,042 + -0.2
4,532,042 + -0.5
4,532,042 + -0.7
4,532,043 - -1.7
4,532,043 - -1.3
4,532,043 - +0.9
4,532,043 - -2.2
4,532,043 - -1.2
4,532,043 - -1.5
4,532,043 - +0.2
4,532,043 - -0.5
4,532,043 - +0.4
4,532,126 + -0.3
4,532,150 + -0.2
4,532,150 + +0.8
4,532,150 + +0.1
4,532,150 + +0.6
4,532,150 + -0.1
4,532,150 + +0.0
4,532,151 - -1.5
4,532,151 - +1.7
4,532,151 - +0.0
4,532,151 - -0.7
4,532,456 + AMB_RS20875 0.20 -1.2
4,532,523 - AMB_RS20875 0.24 -1.9
4,532,523 - AMB_RS20875 0.24 -0.3
4,532,523 - AMB_RS20875 0.24 +0.1
4,532,552 + AMB_RS20875 0.26 -0.7
4,532,552 + AMB_RS20875 0.26 -0.3
4,532,552 + AMB_RS20875 0.26 -0.0
4,532,552 + AMB_RS20875 0.26 -0.1
4,532,552 + AMB_RS20875 0.26 -0.6
4,532,552 + AMB_RS20875 0.26 +0.1
4,532,552 + AMB_RS20875 0.26 -0.3
4,532,553 - AMB_RS20875 0.26 -0.1
4,532,553 - AMB_RS20875 0.26 +0.1
4,532,553 - AMB_RS20875 0.26 -1.0
4,532,553 - AMB_RS20875 0.26 -1.2
4,532,553 - AMB_RS20875 0.26 +0.1
4,532,553 - AMB_RS20875 0.26 -0.2
4,532,553 - AMB_RS20875 0.26 -1.2
4,532,553 - AMB_RS20875 0.26 -2.2
4,532,688 + AMB_RS20875 0.34 +0.0
4,532,688 + AMB_RS20875 0.34 -0.7
4,532,689 - AMB_RS20875 0.34 -0.7
4,532,689 - AMB_RS20875 0.34 -0.3
4,532,690 + AMB_RS20875 0.34 -0.3
4,532,691 - AMB_RS20875 0.34 -0.3
4,532,691 - AMB_RS20875 0.34 +0.5
4,532,691 - AMB_RS20875 0.34 -0.2
4,532,691 - AMB_RS20875 0.34 +1.1
4,532,691 - AMB_RS20875 0.34 +0.5
4,532,900 + AMB_RS20875 0.47 -2.7
4,532,900 + AMB_RS20875 0.47 +0.0
4,532,901 - AMB_RS20875 0.47 +0.6
4,532,901 - AMB_RS20875 0.47 -0.1
4,533,037 - AMB_RS20875 0.55 -0.9
4,533,037 - AMB_RS20875 0.55 +0.1
4,533,038 + AMB_RS20875 0.56 -2.3
4,533,038 + AMB_RS20875 0.56 +0.0
4,533,038 + AMB_RS20875 0.56 -0.7
4,533,038 + AMB_RS20875 0.56 +0.1
4,533,038 + AMB_RS20875 0.56 -0.2
4,533,038 + AMB_RS20875 0.56 +0.6
4,533,038 + AMB_RS20875 0.56 +1.7
4,533,038 + AMB_RS20875 0.56 +0.1
4,533,039 - AMB_RS20875 0.56 -0.7
4,533,039 - AMB_RS20875 0.56 -1.2
4,533,039 - AMB_RS20875 0.56 +0.4
4,533,039 - AMB_RS20875 0.56 -2.2
4,533,039 - AMB_RS20875 0.56 -0.3
4,533,039 - AMB_RS20875 0.56 -0.3
4,533,039 - AMB_RS20875 0.56 -2.8
4,533,039 - AMB_RS20875 0.56 -0.9
4,533,039 - AMB_RS20875 0.56 -0.2
4,533,495 + AMB_RS20875 0.83 -0.9
4,533,495 + AMB_RS20875 0.83 +0.1
4,533,495 + AMB_RS20875 0.83 +0.5
4,533,496 - AMB_RS20875 0.83 +0.1
4,533,496 - AMB_RS20875 0.83 -1.8
4,533,497 + AMB_RS20875 0.83 -1.2
4,533,497 + AMB_RS20875 0.83 +0.1
4,533,497 + AMB_RS20875 0.83 -0.8
4,533,497 + AMB_RS20875 0.83 -0.5
4,533,498 - AMB_RS20875 0.84 -2.9
4,533,498 - AMB_RS20875 0.84 -2.5
4,533,498 - AMB_RS20875 0.84 -3.1
4,533,498 - AMB_RS20875 0.84 +0.7
4,533,498 - AMB_RS20875 0.84 -0.7
4,533,498 - AMB_RS20875 0.84 -1.8
4,533,498 - AMB_RS20875 0.84 +0.3
4,533,498 - AMB_RS20875 0.84 -0.2
4,533,596 + AMB_RS20875 0.89 +1.7
4,533,596 + AMB_RS20875 0.89 +0.4
4,533,597 - AMB_RS20875 0.90 -0.1
4,533,597 - AMB_RS20875 0.90 -0.3
4,533,746 + -0.7
4,533,746 + -0.1
4,533,746 + +0.5
4,533,901 + -0.3
4,533,966 + -0.9
4,533,966 + -0.8
4,533,966 + -1.2
4,533,967 - +1.7
4,533,967 - -0.7
4,533,967 - -0.3
4,533,967 - -0.2
4,533,967 - -0.7
4,533,967 - -0.7
4,533,967 - +0.1
4,534,246 + AMB_RS20880 0.50 +0.3
4,534,246 + AMB_RS20880 0.50 +0.7
4,534,246 + AMB_RS20880 0.50 -0.1
4,534,246 + AMB_RS20880 0.50 -1.2
4,534,247 - AMB_RS20880 0.51 -0.3
4,534,321 + AMB_RS20880 0.62 +0.1
4,534,321 + AMB_RS20880 0.62 -0.3
4,534,321 + AMB_RS20880 0.62 -3.6
4,534,322 - AMB_RS20880 0.63 -1.9
4,534,449 + AMB_RS20880 0.83 +0.3
4,534,449 + AMB_RS20880 0.83 -1.7
4,534,449 + AMB_RS20880 0.83 -2.0
4,534,450 - AMB_RS20880 0.83 -1.3
4,534,450 - AMB_RS20880 0.83 +0.7
4,534,450 - AMB_RS20880 0.83 +0.7
4,534,688 + -0.3
4,534,688 + +0.0
4,534,688 + +0.1
4,534,689 - -0.4
4,534,689 - +0.6
4,534,722 - +0.8

Or see this region's nucleotide sequence