Experiment: 30_an_initial_2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AMB_RS19750 and AMB_RS19755 are separated by 48 nucleotides AMB_RS19755 and AMB_RS19760 are separated by 139 nucleotides AMB_RS19760 and AMB_RS19765 are separated by 99 nucleotides
AMB_RS19750: AMB_RS19750 - 3-hydroxybutyryl-CoA dehydrogenase, at 4,317,645 to 4,318,523
_RS19750
AMB_RS19755: AMB_RS19755 - electron transfer flavoprotein subunit alpha, at 4,318,572 to 4,319,507
_RS19755
AMB_RS19760: AMB_RS19760 - electron transfer flavoprotein subunit beta/FixA family protein, at 4,319,647 to 4,320,396
_RS19760
AMB_RS19765: AMB_RS19765 - ATP:cob(I)alamin adenosyltransferase, at 4,320,496 to 4,321,062
_RS19765
Position (kb) 4318
4319
4320 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4317.646 kb on + strand at 4317.646 kb on + strand at 4317.676 kb on + strand at 4317.677 kb on - strand at 4317.682 kb on + strand at 4317.683 kb on - strand at 4317.727 kb on + strand at 4317.727 kb on + strand at 4317.727 kb on + strand at 4317.727 kb on + strand at 4317.727 kb on + strand at 4317.728 kb on - strand at 4317.728 kb on - strand at 4317.728 kb on - strand at 4317.754 kb on + strand, within AMB_RS19750 at 4317.755 kb on - strand, within AMB_RS19750 at 4317.755 kb on - strand, within AMB_RS19750 at 4317.755 kb on - strand, within AMB_RS19750 at 4317.755 kb on - strand, within AMB_RS19750 at 4317.908 kb on - strand, within AMB_RS19750 at 4317.908 kb on - strand, within AMB_RS19750 at 4317.916 kb on + strand, within AMB_RS19750 at 4317.916 kb on + strand, within AMB_RS19750 at 4317.917 kb on - strand, within AMB_RS19750 at 4317.917 kb on - strand, within AMB_RS19750 at 4318.181 kb on + strand, within AMB_RS19750 at 4318.182 kb on - strand, within AMB_RS19750 at 4318.291 kb on + strand, within AMB_RS19750 at 4318.291 kb on + strand, within AMB_RS19750 at 4318.292 kb on - strand, within AMB_RS19750 at 4318.292 kb on - strand, within AMB_RS19750 at 4318.508 kb on + strand at 4318.508 kb on + strand at 4318.509 kb on - strand at 4318.509 kb on - strand at 4318.514 kb on + strand at 4318.514 kb on + strand at 4318.514 kb on + strand at 4318.515 kb on - strand at 4318.515 kb on - strand at 4318.515 kb on - strand at 4318.524 kb on + strand at 4318.524 kb on + strand at 4318.525 kb on - strand at 4318.525 kb on - strand at 4318.540 kb on - strand at 4318.540 kb on - strand at 4318.540 kb on - strand at 4318.542 kb on + strand at 4318.542 kb on + strand at 4318.542 kb on + strand at 4318.542 kb on + strand at 4318.542 kb on + strand at 4318.542 kb on + strand at 4318.543 kb on - strand at 4318.543 kb on - strand at 4318.543 kb on - strand at 4318.573 kb on + strand at 4318.574 kb on - strand at 4318.574 kb on - strand at 4320.359 kb on + strand at 4320.460 kb on + strand at 4320.475 kb on + strand at 4320.475 kb on + strand at 4320.475 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 30_an_initial_2 remove 4,317,646 + +1.6 4,317,646 + -2.8 4,317,676 + -0.9 4,317,677 - +1.0 4,317,682 + -0.0 4,317,683 - +0.1 4,317,727 + -1.7 4,317,727 + -0.7 4,317,727 + -0.3 4,317,727 + -1.2 4,317,727 + +0.7 4,317,728 - +0.4 4,317,728 - -0.9 4,317,728 - -1.2 4,317,754 + AMB_RS19750 0.12 -0.9 4,317,755 - AMB_RS19750 0.13 -0.1 4,317,755 - AMB_RS19750 0.13 -0.0 4,317,755 - AMB_RS19750 0.13 -0.2 4,317,755 - AMB_RS19750 0.13 -1.4 4,317,908 - AMB_RS19750 0.30 +0.9 4,317,908 - AMB_RS19750 0.30 +0.6 4,317,916 + AMB_RS19750 0.31 -0.6 4,317,916 + AMB_RS19750 0.31 +1.6 4,317,917 - AMB_RS19750 0.31 -0.7 4,317,917 - AMB_RS19750 0.31 +0.1 4,318,181 + AMB_RS19750 0.61 -0.4 4,318,182 - AMB_RS19750 0.61 +0.7 4,318,291 + AMB_RS19750 0.73 -2.6 4,318,291 + AMB_RS19750 0.73 -1.2 4,318,292 - AMB_RS19750 0.74 +0.2 4,318,292 - AMB_RS19750 0.74 -0.3 4,318,508 + -1.7 4,318,508 + -0.4 4,318,509 - +1.2 4,318,509 - -0.6 4,318,514 + +0.4 4,318,514 + -0.2 4,318,514 + -1.4 4,318,515 - -1.6 4,318,515 - -0.9 4,318,515 - +0.2 4,318,524 + +0.0 4,318,524 + -0.8 4,318,525 - -0.3 4,318,525 - -2.6 4,318,540 - -1.0 4,318,540 - -0.0 4,318,540 - +0.4 4,318,542 + -0.1 4,318,542 + +1.6 4,318,542 + +0.6 4,318,542 + -0.6 4,318,542 + -0.9 4,318,542 + +1.4 4,318,543 - -0.2 4,318,543 - -1.6 4,318,543 - -0.2 4,318,573 + -2.9 4,318,574 - -0.5 4,318,574 - +0.8 4,320,359 + -0.1 4,320,460 + -1.5 4,320,475 + -2.0 4,320,475 + -0.0 4,320,475 + -0.9
Or see this region's nucleotide sequence