Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS19135

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS19125 and AMB_RS19130 are separated by 153 nucleotidesAMB_RS19130 and AMB_RS19135 are separated by 80 nucleotidesAMB_RS19135 and AMB_RS19140 overlap by 1 nucleotidesAMB_RS19140 and AMB_RS23615 are separated by 7 nucleotides AMB_RS19125: AMB_RS19125 - hypothetical protein, at 4,158,935 to 4,160,386 _RS19125 AMB_RS19130: AMB_RS19130 - tRNA-Gln, at 4,160,540 to 4,160,613 _RS19130 AMB_RS19135: AMB_RS19135 - Ppx/GppA family phosphatase, at 4,160,694 to 4,161,842 _RS19135 AMB_RS19140: AMB_RS19140 - 23S rRNA methyltransferase, at 4,161,842 to 4,162,576 _RS19140 AMB_RS23615: AMB_RS23615 - host attachment protein, at 4,162,584 to 4,163,033 _RS23615 Position (kb) 4160 4161 4162Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4159.700 kb on + strand, within AMB_RS19125at 4159.700 kb on + strand, within AMB_RS19125at 4159.700 kb on + strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.701 kb on - strand, within AMB_RS19125at 4159.702 kb on + strand, within AMB_RS19125at 4159.702 kb on + strand, within AMB_RS19125at 4159.702 kb on + strand, within AMB_RS19125at 4159.703 kb on - strand, within AMB_RS19125at 4159.703 kb on - strand, within AMB_RS19125at 4159.704 kb on + strand, within AMB_RS19125at 4159.704 kb on + strand, within AMB_RS19125at 4159.704 kb on + strand, within AMB_RS19125at 4159.704 kb on + strand, within AMB_RS19125at 4159.705 kb on - strand, within AMB_RS19125at 4159.705 kb on - strand, within AMB_RS19125at 4159.705 kb on - strand, within AMB_RS19125at 4159.705 kb on - strand, within AMB_RS19125at 4159.929 kb on + strand, within AMB_RS19125at 4159.929 kb on + strand, within AMB_RS19125at 4159.930 kb on - strand, within AMB_RS19125at 4159.930 kb on - strand, within AMB_RS19125at 4159.930 kb on - strand, within AMB_RS19125at 4159.971 kb on + strand, within AMB_RS19125at 4159.971 kb on + strand, within AMB_RS19125at 4159.972 kb on - strand, within AMB_RS19125at 4159.972 kb on - strand, within AMB_RS19125at 4159.972 kb on - strand, within AMB_RS19125at 4159.992 kb on + strand, within AMB_RS19125at 4159.992 kb on + strand, within AMB_RS19125at 4159.992 kb on + strand, within AMB_RS19125at 4159.992 kb on + strand, within AMB_RS19125at 4159.992 kb on + strand, within AMB_RS19125at 4159.993 kb on - strand, within AMB_RS19125at 4159.993 kb on - strand, within AMB_RS19125at 4160.044 kb on - strand, within AMB_RS19125at 4160.063 kb on + strand, within AMB_RS19125at 4160.064 kb on - strand, within AMB_RS19125at 4160.139 kb on + strand, within AMB_RS19125at 4160.140 kb on - strand, within AMB_RS19125at 4160.140 kb on - strand, within AMB_RS19125at 4160.140 kb on - strand, within AMB_RS19125at 4160.277 kb on + strandat 4160.277 kb on + strandat 4160.278 kb on - strandat 4160.278 kb on - strandat 4160.301 kb on + strandat 4160.329 kb on + strandat 4160.330 kb on - strandat 4160.330 kb on - strandat 4160.330 kb on - strandat 4160.331 kb on + strandat 4160.332 kb on - strandat 4160.332 kb on - strandat 4160.332 kb on - strandat 4160.343 kb on + strandat 4160.344 kb on - strandat 4160.344 kb on - strandat 4160.344 kb on - strandat 4160.368 kb on + strandat 4160.368 kb on + strandat 4160.369 kb on - strandat 4160.460 kb on + strandat 4160.460 kb on + strandat 4160.465 kb on + strandat 4160.466 kb on - strandat 4160.512 kb on + strandat 4160.847 kb on + strand, within AMB_RS19135at 4160.909 kb on + strand, within AMB_RS19135at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.691 kb on + strand, within AMB_RS23615at 4162.692 kb on - strand, within AMB_RS23615at 4162.692 kb on - strand, within AMB_RS23615at 4162.692 kb on - strand, within AMB_RS23615at 4162.837 kb on + strand, within AMB_RS23615at 4162.838 kb on - strand, within AMB_RS23615

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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4,159,700 + AMB_RS19125 0.53 +0.6
4,159,700 + AMB_RS19125 0.53 -0.2
4,159,700 + AMB_RS19125 0.53 -1.1
4,159,701 - AMB_RS19125 0.53 +0.5
4,159,701 - AMB_RS19125 0.53 +0.6
4,159,701 - AMB_RS19125 0.53 -0.6
4,159,701 - AMB_RS19125 0.53 +0.2
4,159,701 - AMB_RS19125 0.53 -0.6
4,159,701 - AMB_RS19125 0.53 +1.6
4,159,701 - AMB_RS19125 0.53 -2.1
4,159,701 - AMB_RS19125 0.53 -0.8
4,159,701 - AMB_RS19125 0.53 -1.0
4,159,701 - AMB_RS19125 0.53 -0.0
4,159,701 - AMB_RS19125 0.53 -0.1
4,159,701 - AMB_RS19125 0.53 -0.2
4,159,701 - AMB_RS19125 0.53 -1.4
4,159,702 + AMB_RS19125 0.53 -0.4
4,159,702 + AMB_RS19125 0.53 +0.2
4,159,702 + AMB_RS19125 0.53 +0.2
4,159,703 - AMB_RS19125 0.53 -2.9
4,159,703 - AMB_RS19125 0.53 +0.4
4,159,704 + AMB_RS19125 0.53 +0.1
4,159,704 + AMB_RS19125 0.53 +0.5
4,159,704 + AMB_RS19125 0.53 +0.5
4,159,704 + AMB_RS19125 0.53 +0.6
4,159,705 - AMB_RS19125 0.53 -0.4
4,159,705 - AMB_RS19125 0.53 +0.3
4,159,705 - AMB_RS19125 0.53 -2.0
4,159,705 - AMB_RS19125 0.53 -1.4
4,159,929 + AMB_RS19125 0.68 +0.1
4,159,929 + AMB_RS19125 0.68 +0.6
4,159,930 - AMB_RS19125 0.69 +0.4
4,159,930 - AMB_RS19125 0.69 +0.4
4,159,930 - AMB_RS19125 0.69 -1.2
4,159,971 + AMB_RS19125 0.71 +1.2
4,159,971 + AMB_RS19125 0.71 -1.6
4,159,972 - AMB_RS19125 0.71 -1.2
4,159,972 - AMB_RS19125 0.71 +0.6
4,159,972 - AMB_RS19125 0.71 -0.1
4,159,992 + AMB_RS19125 0.73 -1.2
4,159,992 + AMB_RS19125 0.73 -1.0
4,159,992 + AMB_RS19125 0.73 -0.4
4,159,992 + AMB_RS19125 0.73 -2.5
4,159,992 + AMB_RS19125 0.73 -1.2
4,159,993 - AMB_RS19125 0.73 -0.4
4,159,993 - AMB_RS19125 0.73 +0.1
4,160,044 - AMB_RS19125 0.76 -0.0
4,160,063 + AMB_RS19125 0.78 -0.1
4,160,064 - AMB_RS19125 0.78 -0.4
4,160,139 + AMB_RS19125 0.83 -0.3
4,160,140 - AMB_RS19125 0.83 -1.4
4,160,140 - AMB_RS19125 0.83 -0.0
4,160,140 - AMB_RS19125 0.83 -0.3
4,160,277 + -0.9
4,160,277 + -2.0
4,160,278 - +2.1
4,160,278 - -0.6
4,160,301 + -0.9
4,160,329 + -1.8
4,160,330 - -0.4
4,160,330 - -0.0
4,160,330 - -2.4
4,160,331 + -0.8
4,160,332 - -0.6
4,160,332 - -1.4
4,160,332 - -0.5
4,160,343 + -0.4
4,160,344 - -2.2
4,160,344 - +0.6
4,160,344 - +0.3
4,160,368 + +0.7
4,160,368 + -1.6
4,160,369 - -1.0
4,160,460 + +0.2
4,160,460 + +0.0
4,160,465 + -1.9
4,160,466 - +0.1
4,160,512 + -0.8
4,160,847 + AMB_RS19135 0.13 +0.9
4,160,909 + AMB_RS19135 0.19 -0.4
4,162,691 + AMB_RS23615 0.24 -0.4
4,162,691 + AMB_RS23615 0.24 +0.2
4,162,691 + AMB_RS23615 0.24 -2.4
4,162,691 + AMB_RS23615 0.24 -1.4
4,162,691 + AMB_RS23615 0.24 -1.4
4,162,691 + AMB_RS23615 0.24 -0.3
4,162,691 + AMB_RS23615 0.24 -1.4
4,162,691 + AMB_RS23615 0.24 -2.6
4,162,691 + AMB_RS23615 0.24 -4.8
4,162,692 - AMB_RS23615 0.24 +0.3
4,162,692 - AMB_RS23615 0.24 -0.2
4,162,692 - AMB_RS23615 0.24 -0.3
4,162,837 + AMB_RS23615 0.56 +1.6
4,162,838 - AMB_RS23615 0.56 +0.1

Or see this region's nucleotide sequence