Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS14965

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS14960 and AMB_RS14965 are separated by 67 nucleotidesAMB_RS14965 and AMB_RS24565 overlap by 4 nucleotides AMB_RS14960: AMB_RS14960 - hypothetical protein, at 3,204,569 to 3,205,738 _RS14960 AMB_RS14965: AMB_RS14965 - DUF2339 domain-containing protein, at 3,205,806 to 3,208,412 _RS14965 AMB_RS24565: AMB_RS24565 - hypothetical protein, at 3,208,409 to 3,209,656 _RS24565 Position (kb) 3205 3206 3207 3208 3209Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3204.842 kb on + strand, within AMB_RS14960at 3204.843 kb on - strand, within AMB_RS14960at 3204.854 kb on + strand, within AMB_RS14960at 3204.855 kb on - strand, within AMB_RS14960at 3204.855 kb on - strand, within AMB_RS14960at 3204.872 kb on + strand, within AMB_RS14960at 3204.872 kb on + strand, within AMB_RS14960at 3204.873 kb on - strand, within AMB_RS14960at 3204.873 kb on - strand, within AMB_RS14960at 3204.873 kb on - strand, within AMB_RS14960at 3204.873 kb on - strand, within AMB_RS14960at 3204.891 kb on - strand, within AMB_RS14960at 3204.956 kb on + strand, within AMB_RS14960at 3204.956 kb on + strand, within AMB_RS14960at 3204.956 kb on + strand, within AMB_RS14960at 3204.957 kb on - strand, within AMB_RS14960at 3204.957 kb on - strand, within AMB_RS14960at 3205.079 kb on + strand, within AMB_RS14960at 3205.079 kb on + strand, within AMB_RS14960at 3205.080 kb on - strand, within AMB_RS14960at 3205.080 kb on - strand, within AMB_RS14960at 3205.080 kb on - strand, within AMB_RS14960at 3205.274 kb on + strand, within AMB_RS14960at 3205.405 kb on + strand, within AMB_RS14960at 3205.405 kb on + strand, within AMB_RS14960at 3205.405 kb on + strand, within AMB_RS14960at 3205.405 kb on + strand, within AMB_RS14960at 3205.406 kb on - strand, within AMB_RS14960at 3206.361 kb on + strand, within AMB_RS14965at 3206.361 kb on + strand, within AMB_RS14965at 3206.370 kb on + strand, within AMB_RS14965at 3206.370 kb on + strand, within AMB_RS14965at 3206.371 kb on - strand, within AMB_RS14965at 3206.371 kb on - strand, within AMB_RS14965at 3206.950 kb on - strand, within AMB_RS14965at 3206.950 kb on - strand, within AMB_RS14965at 3207.195 kb on + strand, within AMB_RS14965at 3207.196 kb on - strand, within AMB_RS14965at 3207.525 kb on + strand, within AMB_RS14965at 3207.525 kb on + strand, within AMB_RS14965at 3207.525 kb on + strand, within AMB_RS14965at 3207.526 kb on - strand, within AMB_RS14965at 3207.526 kb on - strand, within AMB_RS14965at 3207.526 kb on - strand, within AMB_RS14965at 3207.526 kb on - strand, within AMB_RS14965at 3207.526 kb on - strand, within AMB_RS14965at 3207.526 kb on - strand, within AMB_RS14965at 3207.537 kb on + strand, within AMB_RS14965at 3207.750 kb on + strand, within AMB_RS14965at 3207.884 kb on - strand, within AMB_RS14965at 3207.999 kb on + strand, within AMB_RS14965at 3207.999 kb on + strand, within AMB_RS14965at 3208.167 kb on + strandat 3208.167 kb on + strandat 3208.374 kb on + strandat 3208.897 kb on + strand, within AMB_RS24565at 3208.898 kb on - strand, within AMB_RS24565at 3208.993 kb on + strand, within AMB_RS24565at 3209.015 kb on - strand, within AMB_RS24565at 3209.015 kb on - strand, within AMB_RS24565

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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3,204,842 + AMB_RS14960 0.23 -3.4
3,204,843 - AMB_RS14960 0.23 -0.1
3,204,854 + AMB_RS14960 0.24 -1.7
3,204,855 - AMB_RS14960 0.24 -1.7
3,204,855 - AMB_RS14960 0.24 +0.6
3,204,872 + AMB_RS14960 0.26 +0.2
3,204,872 + AMB_RS14960 0.26 +0.2
3,204,873 - AMB_RS14960 0.26 +0.7
3,204,873 - AMB_RS14960 0.26 -0.4
3,204,873 - AMB_RS14960 0.26 +0.5
3,204,873 - AMB_RS14960 0.26 -1.1
3,204,891 - AMB_RS14960 0.28 +0.2
3,204,956 + AMB_RS14960 0.33 -0.2
3,204,956 + AMB_RS14960 0.33 +0.3
3,204,956 + AMB_RS14960 0.33 -0.1
3,204,957 - AMB_RS14960 0.33 -1.7
3,204,957 - AMB_RS14960 0.33 -0.5
3,205,079 + AMB_RS14960 0.44 -1.1
3,205,079 + AMB_RS14960 0.44 -1.4
3,205,080 - AMB_RS14960 0.44 -2.2
3,205,080 - AMB_RS14960 0.44 +0.3
3,205,080 - AMB_RS14960 0.44 -0.7
3,205,274 + AMB_RS14960 0.60 -1.3
3,205,405 + AMB_RS14960 0.71 +2.6
3,205,405 + AMB_RS14960 0.71 -2.0
3,205,405 + AMB_RS14960 0.71 -2.4
3,205,405 + AMB_RS14960 0.71 -2.7
3,205,406 - AMB_RS14960 0.72 -1.1
3,206,361 + AMB_RS14965 0.21 -0.5
3,206,361 + AMB_RS14965 0.21 +0.2
3,206,370 + AMB_RS14965 0.22 -0.5
3,206,370 + AMB_RS14965 0.22 +0.1
3,206,371 - AMB_RS14965 0.22 -0.2
3,206,371 - AMB_RS14965 0.22 -0.5
3,206,950 - AMB_RS14965 0.44 -1.8
3,206,950 - AMB_RS14965 0.44 +0.8
3,207,195 + AMB_RS14965 0.53 +0.0
3,207,196 - AMB_RS14965 0.53 +0.8
3,207,525 + AMB_RS14965 0.66 +1.5
3,207,525 + AMB_RS14965 0.66 -1.3
3,207,525 + AMB_RS14965 0.66 -0.1
3,207,526 - AMB_RS14965 0.66 +0.3
3,207,526 - AMB_RS14965 0.66 -0.2
3,207,526 - AMB_RS14965 0.66 +0.5
3,207,526 - AMB_RS14965 0.66 -2.2
3,207,526 - AMB_RS14965 0.66 -1.3
3,207,526 - AMB_RS14965 0.66 -4.5
3,207,537 + AMB_RS14965 0.66 +0.6
3,207,750 + AMB_RS14965 0.75 +0.4
3,207,884 - AMB_RS14965 0.80 +0.0
3,207,999 + AMB_RS14965 0.84 +0.3
3,207,999 + AMB_RS14965 0.84 -1.3
3,208,167 + -1.7
3,208,167 + +0.1
3,208,374 + -0.2
3,208,897 + AMB_RS24565 0.39 -0.1
3,208,898 - AMB_RS24565 0.39 -0.5
3,208,993 + AMB_RS24565 0.47 +0.2
3,209,015 - AMB_RS24565 0.49 +0.3
3,209,015 - AMB_RS24565 0.49 +0.2

Or see this region's nucleotide sequence