Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS12680

Experiment: 30_an_initial_2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAMB_RS12670 and AMB_RS12675 overlap by 1 nucleotidesAMB_RS12675 and AMB_RS12680 are separated by 1 nucleotidesAMB_RS12680 and AMB_RS12685 are separated by 14 nucleotidesAMB_RS12685 and AMB_RS12690 are separated by 10 nucleotides AMB_RS12670: AMB_RS12670 - protein-L-isoaspartate O-methyltransferase, at 2,701,453 to 2,702,097 _RS12670 AMB_RS12675: AMB_RS12675 - 5'-nucleotidase SurE, at 2,702,097 to 2,702,879 _RS12675 AMB_RS12680: AMB_RS12680 - serine--tRNA ligase, at 2,702,881 to 2,704,149 _RS12680 AMB_RS12685: AMB_RS12685 - twin-arginine translocase subunit TatC, at 2,704,164 to 2,704,988 _RS12685 AMB_RS12690: AMB_RS12690 - twin-arginine translocase subunit TatB, at 2,704,999 to 2,705,370 _RS12690 Position (kb) 2702 2703 2704 2705Strain fitness (log2 ratio) -2 -1 0 1at 2701.959 kb on - strand, within AMB_RS12670at 2701.959 kb on - strand, within AMB_RS12670at 2702.246 kb on - strand, within AMB_RS12675at 2702.536 kb on + strand, within AMB_RS12675at 2702.537 kb on - strand, within AMB_RS12675

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Per-strain Table

Position Strand Gene LocusTag Fraction 30_an_initial_2
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2,701,959 - AMB_RS12670 0.78 -0.1
2,701,959 - AMB_RS12670 0.78 -0.4
2,702,246 - AMB_RS12675 0.19 -0.5
2,702,536 + AMB_RS12675 0.56 -1.1
2,702,537 - AMB_RS12675 0.56 -2.6

Or see this region's nucleotide sequence