Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS11645

Experiment: 30_an_initial_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_2
2,504,643	-		AMB_RS11640	0.40	-2.1
2,504,784	+		AMB_RS11640	0.65	-2.0
2,504,785	-		AMB_RS11640	0.65	-4.5
2,504,922	+		AMB_RS11640	0.89	-5.4
2,504,922	+		AMB_RS11640	0.89	-2.1
2,504,923	-		AMB_RS11640	0.89	-1.3
2,504,923	-		AMB_RS11640	0.89	-2.1
2,504,923	-		AMB_RS11640	0.89	-2.1
2,504,923	-		AMB_RS11640	0.89	-3.6
2,504,945	+				-1.1
2,504,946	-				-2.2
2,504,952	-				-2.4
2,505,082	-				-0.2
2,505,096	-				-1.8
2,505,119	-				-0.5
2,505,215	+		AMB_RS24540	0.55	+0.3
2,505,625	+				+0.1
2,505,625	+				-0.4
2,505,625	+				+0.2
2,505,637	+				+0.2
2,505,638	-				-0.2
2,505,700	+				-1.1
2,505,700	+				-0.2
2,505,700	+				+1.6
2,505,700	+				-0.1
2,505,701	-				+0.3
2,505,701	-				+0.0
2,505,701	-				-0.5
2,505,745	+				-1.3
2,505,746	-				-1.3
2,505,746	-				-1.3
2,505,781	+				-1.2
2,505,781	+				-2.0
2,505,781	+				+1.5
2,505,781	+				-1.1
2,505,782	-				+0.1
2,505,782	-				+0.5
2,505,838	+		AMB_RS11645	0.12	-0.8
2,505,838	+		AMB_RS11645	0.12	-0.8
2,505,838	+		AMB_RS11645	0.12	+0.2
2,505,838	+		AMB_RS11645	0.12	-1.3
2,505,838	+		AMB_RS11645	0.12	-1.7
2,505,839	-		AMB_RS11645	0.12	+0.4
2,505,839	-		AMB_RS11645	0.12	+0.3
2,505,839	-		AMB_RS11645	0.12	-0.1
2,505,839	-		AMB_RS11645	0.12	-2.0
2,505,839	-		AMB_RS11645	0.12	+0.1
2,505,839	-		AMB_RS11645	0.12	-0.8
2,505,877	+		AMB_RS11645	0.14	-0.0
2,505,877	+		AMB_RS11645	0.14	-1.8
2,505,878	-		AMB_RS11645	0.14	+0.5
2,505,878	-		AMB_RS11645	0.14	-2.7
2,505,878	-		AMB_RS11645	0.14	-0.1
2,505,878	-		AMB_RS11645	0.14	-1.8
2,505,878	-		AMB_RS11645	0.14	+0.2
2,505,961	+		AMB_RS11645	0.18	-0.6
2,505,961	+		AMB_RS11645	0.18	+0.1
2,505,961	+		AMB_RS11645	0.18	-0.1
2,505,961	+		AMB_RS11645	0.18	+0.2
2,505,961	+		AMB_RS11645	0.18	-2.7
2,505,962	-		AMB_RS11645	0.18	-0.2
2,505,962	-		AMB_RS11645	0.18	-0.2
2,505,962	-		AMB_RS11645	0.18	-0.4
2,505,962	-		AMB_RS11645	0.18	+0.6
2,506,141	+		AMB_RS11645	0.28	-0.1
2,506,141	+		AMB_RS11645	0.28	+0.1
2,506,142	-		AMB_RS11645	0.28	-0.2
2,506,321	+		AMB_RS11645	0.37	+0.2
2,506,321	+		AMB_RS11645	0.37	-2.0
2,506,321	+		AMB_RS11645	0.37	-1.2
2,506,321	+		AMB_RS11645	0.37	-1.4
2,506,321	+		AMB_RS11645	0.37	+1.5
2,506,321	+		AMB_RS11645	0.37	+0.5
2,506,321	+		AMB_RS11645	0.37	-0.7
2,506,322	-		AMB_RS11645	0.37	-1.7
2,506,322	-		AMB_RS11645	0.37	+0.3
2,506,322	-		AMB_RS11645	0.37	+0.4
2,506,322	-		AMB_RS11645	0.37	-0.2
2,506,322	-		AMB_RS11645	0.37	+0.2
2,506,322	-		AMB_RS11645	0.37	-0.5
2,506,322	-		AMB_RS11645	0.37	-1.3
2,506,323	+		AMB_RS11645	0.37	-0.1
2,506,323	+		AMB_RS11645	0.37	+0.5
2,506,323	+		AMB_RS11645	0.37	+0.1
2,506,323	+		AMB_RS11645	0.37	+0.6
2,506,323	+		AMB_RS11645	0.37	+0.1
2,506,330	+		AMB_RS11645	0.37	-1.7
2,506,330	+		AMB_RS11645	0.37	-0.5
2,506,331	-		AMB_RS11645	0.37	-0.3
2,506,332	+		AMB_RS11645	0.38	+0.5
2,506,332	+		AMB_RS11645	0.38	-1.8
2,506,332	+		AMB_RS11645	0.38	+0.2
2,506,332	+		AMB_RS11645	0.38	-0.3
2,506,333	-		AMB_RS11645	0.38	+0.2
2,506,333	-		AMB_RS11645	0.38	+0.4
2,506,333	-		AMB_RS11645	0.38	-0.0
2,506,333	-		AMB_RS11645	0.38	+0.5
2,506,333	-		AMB_RS11645	0.38	-0.5
2,506,333	-		AMB_RS11645	0.38	-0.1
2,506,414	+		AMB_RS11645	0.42	+0.5
2,506,414	+		AMB_RS11645	0.42	-0.5
2,506,414	+		AMB_RS11645	0.42	-2.9
2,506,414	+		AMB_RS11645	0.42	-0.3
2,506,414	+		AMB_RS11645	0.42	-0.1
2,506,414	+		AMB_RS11645	0.42	-1.0
2,506,415	-		AMB_RS11645	0.42	+0.0
2,506,415	-		AMB_RS11645	0.42	-1.1
2,506,415	-		AMB_RS11645	0.42	-0.2
2,506,415	-		AMB_RS11645	0.42	-0.8
2,506,415	-		AMB_RS11645	0.42	+0.1
2,506,415	-		AMB_RS11645	0.42	+0.2
2,506,415	-		AMB_RS11645	0.42	-1.7
2,506,415	-		AMB_RS11645	0.42	-0.5
2,506,421	-		AMB_RS11645	0.42	+0.2
2,506,421	-		AMB_RS11645	0.42	-0.1
2,506,421	-		AMB_RS11645	0.42	-0.3
2,506,421	-		AMB_RS11645	0.42	-0.5
2,506,421	-		AMB_RS11645	0.42	-2.0
2,506,486	+		AMB_RS11645	0.46	+0.0
2,506,486	+		AMB_RS11645	0.46	+0.2
2,506,486	+		AMB_RS11645	0.46	-0.0
2,506,486	+		AMB_RS11645	0.46	-0.2
2,506,486	+		AMB_RS11645	0.46	-0.1
2,506,486	+		AMB_RS11645	0.46	+0.3
2,506,486	+		AMB_RS11645	0.46	-1.3
2,506,487	-		AMB_RS11645	0.46	+1.5
2,506,487	-		AMB_RS11645	0.46	-0.5
2,506,487	-		AMB_RS11645	0.46	+0.4
2,506,487	-		AMB_RS11645	0.46	-0.1
2,506,487	-		AMB_RS11645	0.46	+0.2
2,506,489	-		AMB_RS11645	0.46	-0.2
2,506,489	-		AMB_RS11645	0.46	-0.8
2,506,532	-		AMB_RS11645	0.48	-0.5
2,506,591	+		AMB_RS11645	0.51	-0.8
2,506,591	+		AMB_RS11645	0.51	-0.2
2,506,675	+		AMB_RS11645	0.55	-1.8
2,506,675	+		AMB_RS11645	0.55	-1.7
2,506,675	+		AMB_RS11645	0.55	-0.2
2,506,676	-		AMB_RS11645	0.55	-1.8
2,506,676	-		AMB_RS11645	0.55	-1.1
2,507,014	+		AMB_RS11645	0.73	+0.0
2,507,014	+		AMB_RS11645	0.73	+1.5
2,507,014	+		AMB_RS11645	0.73	-0.5
2,507,014	+		AMB_RS11645	0.73	-1.7
2,507,015	-		AMB_RS11645	0.73	-0.5
2,507,015	-		AMB_RS11645	0.73	-0.1
2,507,015	-		AMB_RS11645	0.73	-0.1
2,507,015	-		AMB_RS11645	0.73	-2.6
2,507,018	-		AMB_RS11645	0.73	+0.3
2,507,018	-		AMB_RS11645	0.73	-0.2
2,507,038	+		AMB_RS11645	0.74	+0.4
2,507,077	+		AMB_RS11645	0.76	-1.3
2,507,078	-		AMB_RS11645	0.76	-0.5
2,507,083	+		AMB_RS11645	0.77	-0.7
2,507,083	+		AMB_RS11645	0.77	-0.5
2,507,083	+		AMB_RS11645	0.77	-0.2
2,507,083	+		AMB_RS11645	0.77	-2.1
2,507,083	+		AMB_RS11645	0.77	-1.3
2,507,084	-		AMB_RS11645	0.77	+0.1
2,507,084	-		AMB_RS11645	0.77	+0.1
2,507,492	+				-1.1
2,507,492	+				-0.1
2,507,492	+				-0.1
2,507,527	+				+0.3
2,507,527	+				+0.5
2,507,528	-				-0.1
2,507,528	-				-0.5
2,507,604	+				-2.2
2,507,640	+				-2.0
2,507,640	+				-0.2
2,507,641	-				-2.3
2,507,641	-				-0.1
2,507,641	-				-2.2
2,507,960	-				+0.3
2,507,960	-				-0.8
2,507,980	+				-0.1
2,507,980	+				+0.8
2,507,980	+				-1.3
2,507,980	+				-0.8
2,507,980	+				-0.3
2,507,981	-				-0.1
2,507,981	-				-0.5
2,507,981	-				-0.4
2,507,984	+				+0.2
2,507,984	+				+0.5
2,507,984	+				-0.6
2,507,985	-				+0.5
2,507,985	-				+0.3
2,507,985	-				-2.0
2,507,986	+				-0.8
2,507,986	+				+1.5
2,507,987	-				+0.5
2,507,987	-				+0.7
2,508,067	+				+1.0
2,508,067	+				+0.5
2,508,108	+				-2.0
2,508,291	+				-0.4
2,508,292	-				-0.4
2,508,292	-				-0.4
2,508,311	+				-1.1
2,508,312	-				-0.2