Strain Fitness in Magnetospirillum magneticum AMB-1 around AMB_RS10890

Experiment: 30_an_initial_2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	30_an_initial_2
2,331,001	+		AMB_RS10885	0.51	-0.1
2,331,001	+		AMB_RS10885	0.51	-1.9
2,331,034	+		AMB_RS10885	0.53	+0.2
2,331,034	+		AMB_RS10885	0.53	+0.4
2,331,034	+		AMB_RS10885	0.53	+0.5
2,331,035	-		AMB_RS10885	0.53	+0.1
2,331,035	-		AMB_RS10885	0.53	-1.7
2,331,035	-		AMB_RS10885	0.53	-2.1
2,331,035	-		AMB_RS10885	0.53	-0.1
2,331,035	-		AMB_RS10885	0.53	+0.5
2,331,154	+		AMB_RS10885	0.59	-0.9
2,331,155	-		AMB_RS10885	0.59	+0.2
2,331,155	-		AMB_RS10885	0.59	-1.5
2,331,172	+		AMB_RS10885	0.60	-0.0
2,331,172	+		AMB_RS10885	0.60	-0.1
2,331,172	+		AMB_RS10885	0.60	-1.1
2,331,172	+		AMB_RS10885	0.60	-0.5
2,331,173	-		AMB_RS10885	0.60	+0.3
2,331,226	+		AMB_RS10885	0.63	-1.5
2,331,226	+		AMB_RS10885	0.63	-0.3
2,331,226	+		AMB_RS10885	0.63	+0.0
2,331,226	+		AMB_RS10885	0.63	+0.3
2,331,226	+		AMB_RS10885	0.63	+0.1
2,331,227	-		AMB_RS10885	0.63	-2.0
2,331,305	-		AMB_RS10885	0.67	-1.1
2,331,306	+		AMB_RS10885	0.67	-1.9
2,331,306	+		AMB_RS10885	0.67	-0.2
2,331,306	+		AMB_RS10885	0.67	+0.3
2,331,307	-		AMB_RS10885	0.67	+0.9
2,331,307	-		AMB_RS10885	0.67	+0.4
2,331,307	-		AMB_RS10885	0.67	+1.5
2,331,307	-		AMB_RS10885	0.67	+0.5
2,331,310	+		AMB_RS10885	0.67	-0.9
2,331,311	-		AMB_RS10885	0.67	-0.4
2,331,352	+		AMB_RS10885	0.69	+0.3
2,331,352	+		AMB_RS10885	0.69	-1.4
2,331,352	+		AMB_RS10885	0.69	-0.1
2,331,352	+		AMB_RS10885	0.69	+0.3
2,331,352	+		AMB_RS10885	0.69	-0.8
2,331,352	+		AMB_RS10885	0.69	-0.4
2,331,352	+		AMB_RS10885	0.69	-0.9
2,331,353	-		AMB_RS10885	0.70	+0.1
2,331,353	-		AMB_RS10885	0.70	-0.1
2,331,353	-		AMB_RS10885	0.70	-1.1
2,331,353	-		AMB_RS10885	0.70	+0.6
2,331,409	+		AMB_RS10885	0.72	-1.1
2,331,409	+		AMB_RS10885	0.72	-2.5
2,331,409	+		AMB_RS10885	0.72	-0.2
2,331,446	-		AMB_RS10885	0.74	+1.5
2,331,481	+		AMB_RS10885	0.76	+0.6
2,331,502	+		AMB_RS10885	0.77	+0.1
2,331,526	+		AMB_RS10885	0.78	+0.0
2,331,526	+		AMB_RS10885	0.78	-0.5
2,331,739	+		AMB_RS10885	0.89	+0.0
2,331,883	+				-0.5
2,331,919	+				-0.1
2,331,919	+				-1.4
2,331,919	+				-2.2
2,331,919	+				-3.9
2,331,919	+				+0.5
2,331,919	+				-1.6
2,331,919	+				-0.5
2,331,919	+				+0.3
2,331,920	-				-0.7
2,331,920	-				-0.1
2,332,021	+				+0.6
2,332,022	-				-0.5
2,332,369	+		AMB_RS10890	0.28	+0.5
2,332,369	+		AMB_RS10890	0.28	+0.0
2,332,670	+		AMB_RS10890	0.51	+0.2
2,332,670	+		AMB_RS10890	0.51	-0.4
2,332,671	-		AMB_RS10890	0.51	-1.4
2,332,671	-		AMB_RS10890	0.51	+0.3
2,332,671	-		AMB_RS10890	0.51	-2.0
2,332,671	-		AMB_RS10890	0.51	-0.1
2,332,671	-		AMB_RS10890	0.51	-1.1
2,332,671	-		AMB_RS10890	0.51	+1.0
2,332,672	+		AMB_RS10890	0.51	-0.0
2,332,694	+		AMB_RS10890	0.53	-0.5
2,332,695	-		AMB_RS10890	0.53	+0.5
2,332,695	-		AMB_RS10890	0.53	-0.1
2,332,817	+		AMB_RS10890	0.62	+0.2
2,332,817	+		AMB_RS10890	0.62	-0.5
2,332,817	+		AMB_RS10890	0.62	+0.9
2,332,818	-		AMB_RS10890	0.62	-1.5
2,332,818	-		AMB_RS10890	0.62	-1.5
2,332,911	-		AMB_RS10890	0.69	+0.8
2,332,911	-		AMB_RS10890	0.69	+0.0
2,333,006	+		AMB_RS10890	0.76	+0.0
2,333,006	+		AMB_RS10890	0.76	-1.7
2,333,006	+		AMB_RS10890	0.76	-1.7
2,333,006	+		AMB_RS10890	0.76	+0.9
2,333,006	+		AMB_RS10890	0.76	+2.2
2,333,006	+		AMB_RS10890	0.76	-1.6
2,333,006	+		AMB_RS10890	0.76	-0.7
2,333,006	+		AMB_RS10890	0.76	+0.2
2,333,007	-		AMB_RS10890	0.76	+0.3
2,333,007	-		AMB_RS10890	0.76	+0.0
2,333,100	-		AMB_RS10890	0.84	+0.4
2,333,108	+		AMB_RS10890	0.84	-0.9
2,333,108	+		AMB_RS10890	0.84	-0.9
2,333,108	+		AMB_RS10890	0.84	+1.1
2,333,108	+		AMB_RS10890	0.84	-0.1
2,333,108	+		AMB_RS10890	0.84	-0.2
2,333,109	-		AMB_RS10890	0.84	-2.4
2,333,109	-		AMB_RS10890	0.84	-0.5
2,333,171	+		AMB_RS10890	0.89	-2.0
2,333,171	+		AMB_RS10890	0.89	-1.2
2,333,171	+		AMB_RS10890	0.89	-1.5
2,333,171	+		AMB_RS10890	0.89	-1.9
2,333,171	+		AMB_RS10890	0.89	+0.5
2,333,171	+		AMB_RS10890	0.89	+0.3
2,333,171	+		AMB_RS10890	0.89	-1.4
2,333,171	+		AMB_RS10890	0.89	+0.5
2,333,172	-		AMB_RS10890	0.89	+1.5
2,333,172	-		AMB_RS10890	0.89	-1.5
2,333,172	-		AMB_RS10890	0.89	-1.9
2,333,172	-		AMB_RS10890	0.89	-1.4
2,333,172	-		AMB_RS10890	0.89	-1.5
2,333,172	-		AMB_RS10890	0.89	+0.9
2,333,172	-		AMB_RS10890	0.89	+0.5
2,333,172	-		AMB_RS10890	0.89	-0.5
2,333,173	+		AMB_RS10890	0.89	+0.2
2,333,174	-		AMB_RS10890	0.89	-0.3
2,333,322	+				-0.2
2,333,322	+				-0.9
2,333,380	+				-0.1
2,333,476	+		AMB_RS10895	0.11	+1.9
2,333,477	-		AMB_RS10895	0.11	+0.1
2,333,503	+		AMB_RS10895	0.12	+0.3
2,333,503	+		AMB_RS10895	0.12	+0.5
2,333,503	+		AMB_RS10895	0.12	-0.5
2,333,503	+		AMB_RS10895	0.12	+0.1
2,333,504	-		AMB_RS10895	0.12	-0.3
2,333,551	+		AMB_RS10895	0.15	-0.5
2,333,578	+		AMB_RS10895	0.17	-1.4
2,333,614	+		AMB_RS10895	0.19	+0.1
2,333,614	+		AMB_RS10895	0.19	-0.7
2,333,615	-		AMB_RS10895	0.20	-2.2
2,333,615	-		AMB_RS10895	0.20	-0.2
2,333,621	+		AMB_RS10895	0.20	-0.3
2,333,698	-		AMB_RS10895	0.25	+0.0
2,333,698	-		AMB_RS10895	0.25	-0.9
2,333,743	+		AMB_RS10895	0.28	-0.5
2,333,743	+		AMB_RS10895	0.28	-2.9
2,333,743	+		AMB_RS10895	0.28	+1.0
2,333,744	-		AMB_RS10895	0.28	-1.7
2,333,744	-		AMB_RS10895	0.28	-1.7
2,333,764	+		AMB_RS10895	0.29	-0.5
2,333,764	+		AMB_RS10895	0.29	-0.4
2,333,764	+		AMB_RS10895	0.29	+0.5
2,333,764	+		AMB_RS10895	0.29	-1.9
2,333,764	+		AMB_RS10895	0.29	-1.0
2,333,765	-		AMB_RS10895	0.29	-1.8
2,333,765	-		AMB_RS10895	0.29	-0.5
2,333,765	-		AMB_RS10895	0.29	-0.0
2,333,765	-		AMB_RS10895	0.29	+0.8
2,333,765	-		AMB_RS10895	0.29	+0.5
2,333,858	-		AMB_RS10895	0.35	+0.3
2,334,044	-		AMB_RS10895	0.47	-0.0
2,334,121	+		AMB_RS10895	0.52	-0.1
2,334,121	+		AMB_RS10895	0.52	+0.3
2,334,122	-		AMB_RS10895	0.53	-0.5
2,334,122	-		AMB_RS10895	0.53	-1.4
2,334,127	+		AMB_RS10895	0.53	-0.3
2,334,128	-		AMB_RS10895	0.53	-0.5
2,334,181	+		AMB_RS10895	0.56	-0.1
2,334,181	+		AMB_RS10895	0.56	-0.1
2,334,181	+		AMB_RS10895	0.56	-3.1
2,334,181	+		AMB_RS10895	0.56	+0.1
2,334,181	+		AMB_RS10895	0.56	+0.5
2,334,182	-		AMB_RS10895	0.56	-0.2
2,334,182	-		AMB_RS10895	0.56	-1.1
2,334,182	-		AMB_RS10895	0.56	+1.5
2,334,182	-		AMB_RS10895	0.56	+0.3
2,334,182	-		AMB_RS10895	0.56	-1.4
2,334,313	+		AMB_RS10895	0.65	-1.7
2,334,313	+		AMB_RS10895	0.65	-0.6